Wall clock time and date at job start Tue Mar 31 2020 11:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00114 * 2 1 4 4 H 1.48501 * 109.47488 * 274.07236 * 3 2 1 5 5 H 1.48502 * 109.46661 * 34.07294 * 3 2 1 6 6 H 1.48495 * 109.47274 * 154.06656 * 3 2 1 7 7 C 1.38820 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99301 * 197.51853 * 7 2 1 9 9 N 1.36927 * 120.00081 * 17.51930 * 7 2 1 10 10 C 1.46925 * 120.63534 * 27.94124 * 9 7 2 11 11 C 1.53194 * 108.77112 * 126.41528 * 10 9 7 12 12 C 1.53039 * 109.31279 * 54.64111 * 11 10 9 13 13 C 1.53004 * 109.45791 * 178.60906 * 12 11 10 14 14 N 1.46500 * 115.54953 * 34.41719 * 13 12 11 15 15 C 1.34776 * 119.99720 * 179.97438 * 14 13 12 16 16 O 1.21512 * 120.00216 * 0.02562 * 15 14 13 17 17 C 1.48171 * 119.99852 * 180.02562 * 15 14 13 18 18 C 1.39307 * 119.72282 * 180.02562 * 17 15 14 19 19 C 1.38591 * 119.05825 * 179.97438 * 18 17 15 20 20 C 1.38630 * 118.48847 * 359.97438 * 19 18 17 21 21 C 1.38557 * 119.35060 * 0.02562 * 20 19 18 22 22 N 1.31520 * 120.90381 * 359.74170 * 21 20 19 23 23 C 1.53001 * 117.49869 * 248.74325 * 13 12 11 24 24 C 1.53002 * 117.49466 * 180.08587 * 13 12 11 25 25 C 1.53039 * 109.53836 * 298.63047 * 12 11 10 26 26 C 1.46931 * 120.62894 * 207.97246 * 9 7 2 27 27 H 0.96996 * 120.00010 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.58069 * 6.63569 * 10 9 7 29 29 H 1.08998 * 109.59003 * 246.20605 * 10 9 7 30 30 H 1.08998 * 109.49998 * 294.68381 * 11 10 9 31 31 H 1.09005 * 109.49492 * 174.58882 * 11 10 9 32 32 H 1.09006 * 109.45864 * 58.65488 * 12 11 10 33 33 H 0.97001 * 120.00053 * 0.02562 * 14 13 12 34 34 H 1.07993 * 120.47336 * 359.96242 * 18 17 15 35 35 H 1.08002 * 120.75662 * 180.02562 * 19 18 17 36 36 H 1.08000 * 120.32094 * 180.02562 * 20 19 18 37 37 H 1.08003 * 119.54465 * 180.02562 * 21 20 19 38 38 H 1.08998 * 117.49823 * 0.02562 * 23 13 12 39 39 H 1.09003 * 117.49358 * 145.02427 * 23 13 12 40 40 H 1.09002 * 117.49655 * 214.98048 * 24 13 12 41 41 H 1.09002 * 117.50210 * 359.97438 * 24 13 12 42 42 H 1.09002 * 109.49328 * 181.31687 * 25 12 11 43 43 H 1.08997 * 109.49711 * 301.38306 * 25 12 11 44 44 H 1.09001 * 109.58574 * 113.79627 * 26 9 7 45 45 H 1.08997 * 109.58825 * 353.36845 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4116 2.0962 -1.3965 5 1 1.4933 2.6262 0.7844 6 1 3.5880 1.4169 0.6123 7 6 2.0102 -1.2022 -0.0005 8 1 3.0527 -1.2239 0.2810 9 7 1.3733 -2.3604 -0.3580 10 6 0.2346 -2.3328 -1.2862 11 6 0.5137 -3.3038 -2.4378 12 6 0.8262 -4.6891 -1.8674 13 6 1.0715 -5.6697 -3.0159 14 7 1.7261 -5.1061 -4.1991 15 6 1.9857 -5.8908 -5.2636 16 8 1.6764 -7.0657 -5.2422 17 6 2.6483 -5.3208 -6.4601 18 6 2.9135 -6.1371 -7.5574 19 6 3.5333 -5.5895 -8.6695 20 6 3.8660 -4.2439 -8.6456 21 6 3.5722 -3.4916 -7.5198 22 7 2.9792 -4.0357 -6.4796 23 6 0.0314 -6.7692 -3.2404 24 6 1.3997 -7.1186 -2.6497 25 6 2.0764 -4.6105 -0.9882 26 6 1.8150 -3.6544 0.1798 27 1 -0.4850 0.8400 0.0004 28 1 0.1092 -1.3245 -1.6807 29 1 -0.6713 -2.6379 -0.7624 30 1 1.3665 -2.9474 -3.0156 31 1 -0.3631 -3.3651 -3.0825 32 1 -0.0173 -5.0342 -1.2693 33 1 1.9733 -4.1682 -4.2161 34 1 2.6401 -7.1817 -7.5417 35 1 3.7514 -6.1971 -9.5354 36 1 4.3494 -3.7866 -9.4962 37 1 3.8297 -2.4429 -7.4979 38 1 -0.8278 -6.7937 -2.5701 39 1 -0.1654 -7.0734 -4.2684 40 1 2.1025 -7.6525 -3.2894 41 1 1.4413 -7.3730 -1.5906 42 1 2.3117 -5.6020 -0.6012 43 1 2.9146 -4.2424 -1.5797 44 1 1.0379 -4.0672 0.8231 45 1 2.7322 -3.5181 0.7526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000058294.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:09 Heat of formation + Delta-G solvation = 34.004407 kcal Electronic energy + Delta-G solvation = -26535.491653 eV Core-core repulsion = 22939.650704 eV Total energy + Delta-G solvation = -3595.840949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.92869 -40.74843 -39.26985 -37.42348 -34.59593 -34.43822 -33.26225 -32.22625 -32.11768 -31.34609 -27.43820 -25.94969 -24.57474 -24.29190 -24.02362 -23.00278 -22.26110 -21.23576 -20.21107 -19.39955 -18.69698 -17.61508 -17.13096 -16.78457 -16.44457 -16.23027 -16.21400 -15.67428 -15.33029 -15.09768 -15.01261 -14.74748 -14.61533 -14.55092 -14.31523 -14.05851 -13.91766 -13.14730 -12.96318 -12.89717 -12.63402 -12.53206 -12.35969 -12.16503 -11.99688 -11.88420 -11.79025 -11.50358 -11.23658 -11.12358 -10.96784 -10.88400 -10.51875 -10.47471 -10.23121 -9.57553 -8.65983 -7.85496 -5.30136 -0.37147 0.25332 1.47619 1.49029 1.58069 1.63688 1.97857 2.52955 2.80782 3.01181 3.07988 3.28293 3.57426 3.67320 3.74060 3.90178 3.96856 4.00585 4.04868 4.09731 4.18438 4.33551 4.47021 4.51668 4.53182 4.68300 4.74597 4.76460 4.81229 4.92804 5.00888 5.02542 5.05785 5.14951 5.17574 5.23148 5.25531 5.35333 5.38335 5.52236 5.57531 5.64022 5.67179 5.77294 6.38431 6.41419 6.78452 7.09139 7.17281 7.88946 8.40646 9.20818 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013186 B = 0.003870 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.906080 B = 7232.960019 C = 8851.307542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.049 4.049 3 Si 0.964 3.036 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.610 5.610 10 C 0.180 3.820 11 C -0.118 4.118 12 C -0.032 4.032 13 C 0.098 3.902 14 N -0.669 5.669 15 C 0.563 3.437 16 O -0.554 6.554 17 C 0.048 3.952 18 C -0.120 4.120 19 C -0.078 4.078 20 C -0.135 4.135 21 C 0.084 3.916 22 N -0.488 5.488 23 C -0.173 4.173 24 C -0.166 4.166 25 C -0.111 4.111 26 C 0.141 3.859 27 H 0.249 0.751 28 H 0.052 0.948 29 H -0.002 1.002 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.415 0.585 34 H 0.148 0.852 35 H 0.178 0.822 36 H 0.180 0.820 37 H 0.184 0.816 38 H 0.108 0.892 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.081 0.919 43 H 0.049 0.951 44 H 0.017 0.983 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.755 -12.352 -17.847 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.244 4.244 3 Si 0.793 3.207 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.393 4.393 8 H 0.082 0.918 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.158 4.158 12 C -0.051 4.051 13 C 0.011 3.989 14 N -0.319 5.319 15 C 0.350 3.650 16 O -0.433 6.433 17 C -0.089 4.089 18 C -0.141 4.141 19 C -0.103 4.103 20 C -0.154 4.154 21 C -0.075 4.075 22 N -0.200 5.200 23 C -0.211 4.211 24 C -0.204 4.204 25 C -0.150 4.150 26 C 0.016 3.984 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.016 0.984 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.254 0.746 34 H 0.166 0.834 35 H 0.195 0.805 36 H 0.198 0.802 37 H 0.200 0.800 38 H 0.126 0.874 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.099 0.901 43 H 0.067 0.933 44 H 0.035 0.965 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.242 -12.537 -17.026 22.046 hybrid contribution 0.336 1.092 -0.411 1.214 sum 6.579 -11.445 -17.437 21.871 Atomic orbital electron populations 1.70185 1.06620 1.25759 1.55431 1.25752 0.95989 1.01359 1.01315 0.85300 0.78241 0.79798 0.77411 1.21240 1.22211 1.19351 1.19515 0.92970 0.86228 1.40538 0.91767 1.44313 1.36418 1.02230 1.50367 1.20539 0.87884 0.97442 0.88689 1.21970 1.00332 0.95192 0.98279 1.20629 0.98740 0.92836 0.92879 1.20876 1.01244 0.89327 0.87456 1.45329 1.58467 1.14168 1.13891 1.18287 0.78482 0.85540 0.82714 1.90696 1.54050 1.16435 1.82165 1.21068 1.01393 0.91133 0.95263 1.22276 0.97150 1.01790 0.92869 1.22081 0.94241 0.95926 0.98102 1.22842 0.98004 0.94597 0.99981 1.23385 0.93697 1.01931 0.88513 1.67518 1.10730 1.11554 1.30197 1.23440 0.93434 1.01461 1.02773 1.23348 0.99139 0.96120 1.01811 1.21902 0.96673 0.99452 0.96981 1.21062 0.97318 0.85917 0.94138 0.94159 0.92912 0.98373 0.93109 0.91999 0.89793 0.74637 0.83442 0.80468 0.80242 0.79952 0.87413 0.88885 0.88804 0.87100 0.90069 0.93256 0.96456 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.52 11.22 21.65 0.24 -55.28 16 2 C -0.05 -2.73 4.90 84.86 0.42 -2.32 16 3 Si 0.96 45.08 29.59 68.60 2.03 47.11 16 4 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 5 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.26 -14.55 9.58 84.04 0.81 -13.74 16 8 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -30.73 2.99 -699.09 -2.09 -32.82 16 10 C 0.18 8.72 5.31 86.36 0.46 9.18 16 11 C -0.12 -4.48 4.83 30.67 0.15 -4.33 16 12 C -0.03 -1.03 2.28 -10.77 -0.02 -1.06 16 13 C 0.10 2.92 2.48 3.61 0.01 2.93 16 14 N -0.67 -20.39 5.38 -425.44 -2.29 -22.67 16 15 C 0.56 16.99 7.52 86.88 0.65 17.64 16 16 O -0.55 -18.03 11.80 -3.75 -0.04 -18.07 16 17 C 0.05 1.25 6.75 41.91 0.28 1.54 16 18 C -0.12 -2.36 9.63 22.61 0.22 -2.14 16 19 C -0.08 -0.95 10.17 22.45 0.23 -0.72 16 20 C -0.13 -1.50 10.11 22.44 0.23 -1.27 16 21 C 0.08 1.45 11.18 84.82 0.95 2.40 16 22 N -0.49 -12.26 9.54 -184.91 -1.76 -14.03 16 23 C -0.17 -4.83 9.37 30.62 0.29 -4.54 16 24 C -0.17 -4.55 8.91 30.62 0.27 -4.28 16 25 C -0.11 -3.73 5.22 30.67 0.16 -3.57 16 26 C 0.14 5.83 6.52 86.36 0.56 6.39 16 27 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 28 H 0.05 2.91 6.06 -2.39 -0.01 2.89 16 29 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 30 H 0.05 1.96 6.50 -2.39 -0.02 1.94 16 31 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.08 2.69 7.90 -2.38 -0.02 2.67 16 33 H 0.42 13.08 5.99 -92.71 -0.56 12.52 16 34 H 0.15 2.78 7.64 -2.91 -0.02 2.76 16 35 H 0.18 0.82 8.06 -2.91 -0.02 0.80 16 36 H 0.18 0.56 8.06 -2.91 -0.02 0.54 16 37 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 38 H 0.11 2.67 8.05 -2.39 -0.02 2.65 16 39 H 0.09 2.85 6.37 -2.39 -0.02 2.84 16 40 H 0.09 2.83 6.37 -2.39 -0.02 2.81 16 41 H 0.11 2.64 7.60 -2.39 -0.02 2.62 16 42 H 0.08 2.29 7.24 -2.39 -0.02 2.27 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.05 2.16 7.93 -2.39 -0.02 2.14 16 Total: -1.00 -69.53 357.19 2.18 -67.34 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.45 Total: 26.31 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 5.65 Total: 2.11 kcal Atomic # 7 Polarization: -118.90 SS G_CDS: -5.90 Total: -124.80 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.04 Total: -18.07 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -69.53 2.18 -67.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000058294.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.346 kcal (2) G-P(sol) polarization free energy of solvation -69.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds