Wall clock time and date at job start Tue Mar 31 2020 10:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99380 * 2 1 4 4 H 1.48501 * 109.47121 * 269.99452 * 3 2 1 5 5 H 1.48501 * 109.47380 * 30.00153 * 3 2 1 6 6 H 1.48502 * 109.47031 * 149.99961 * 3 2 1 7 7 C 1.38811 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99654 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00473 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00544 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49231 * 35.06573 * 10 9 7 12 12 C 1.53034 * 109.49816 * 275.00119 * 10 9 7 13 13 C 1.53039 * 109.54129 * 178.64794 * 12 10 9 14 14 C 1.53188 * 109.31224 * 61.36238 * 13 12 10 15 15 N 1.46923 * 108.77648 * 305.36847 * 14 13 12 16 16 C 1.34784 * 120.63216 * 233.58504 * 15 14 13 17 17 O 1.21274 * 119.99897 * 179.72777 * 16 15 14 18 18 C 1.50695 * 119.99635 * 359.97438 * 16 15 14 19 19 H 1.08994 * 115.55340 * 34.33159 * 18 16 15 20 20 C 1.53001 * 117.50091 * 248.61979 * 18 16 15 21 21 C 1.53000 * 60.00105 * 252.51523 * 20 18 16 22 22 H 1.08998 * 117.51896 * 107.48032 * 21 20 18 23 23 C 1.50696 * 117.49576 * 252.50622 * 21 20 18 24 24 C 1.38673 * 120.41778 * 188.34293 * 23 21 20 25 25 C 1.38629 * 118.42006 * 179.78598 * 24 23 21 26 26 C 1.38224 * 119.16095 * 0.51274 * 25 24 23 27 27 N 1.31859 * 120.76641 * 359.73071 * 26 25 24 28 28 C 1.31886 * 121.72058 * 359.97438 * 27 26 25 29 29 C 1.46927 * 118.74026 * 53.86164 * 15 14 13 30 30 H 0.96997 * 120.00700 * 359.97438 * 1 2 3 31 31 H 0.97007 * 119.99555 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.46244 * 58.62828 * 12 10 9 33 33 H 1.09001 * 109.46295 * 298.66986 * 12 10 9 34 34 H 1.09005 * 109.49539 * 301.41483 * 13 12 10 35 35 H 1.08998 * 109.50390 * 181.31673 * 13 12 10 36 36 H 1.09000 * 109.58866 * 185.58181 * 14 13 12 37 37 H 1.09000 * 109.58642 * 65.15528 * 14 13 12 38 38 H 1.09006 * 117.49589 * 0.02562 * 20 18 16 39 39 H 1.08995 * 117.49915 * 145.02054 * 20 18 16 40 40 H 1.08001 * 120.78878 * 0.02635 * 24 23 21 41 41 H 1.08002 * 120.42232 * 180.21656 * 25 24 23 42 42 H 1.08002 * 119.62146 * 179.69866 * 26 25 24 43 43 H 1.08000 * 119.61379 * 179.97438 * 28 27 26 44 44 H 1.09001 * 109.58608 * 65.92230 * 29 15 14 45 45 H 1.08993 * 109.58827 * 186.35713 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3258 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9685 -3.5512 0.5909 12 6 2.4226 -4.0362 -1.4365 13 6 3.2170 -5.3442 -1.4349 14 6 2.3517 -6.4618 -0.8442 15 7 1.8774 -6.0421 0.4815 16 6 2.0779 -6.8231 1.5616 17 8 1.6859 -6.4631 2.6513 18 6 2.7942 -8.1409 1.4159 19 1 3.5855 -8.1656 0.6668 20 6 1.9750 -9.4167 1.6210 21 6 2.9907 -8.9815 2.6791 22 1 2.6023 -8.5811 3.6155 23 6 4.2634 -9.7806 2.7922 24 6 5.1459 -9.5514 3.8370 25 6 6.3020 -10.3135 3.9034 26 6 6.5402 -11.2623 2.9269 27 7 5.6808 -11.4497 1.9445 28 6 4.5683 -10.7472 1.8530 29 6 1.1748 -4.7578 0.6065 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3881 0.0005 32 1 3.0274 -3.2446 -1.8790 33 1 1.5111 -4.1657 -2.0202 34 1 4.1164 -5.2228 -0.8310 35 1 3.4963 -5.6017 -2.4565 36 1 2.9446 -7.3715 -0.7491 37 1 1.4979 -6.6462 -1.4963 38 1 0.9178 -9.3029 1.8609 39 1 2.2272 -10.2810 1.0066 40 1 4.9356 -8.7998 4.5835 41 1 7.0100 -10.1645 4.7052 42 1 7.4409 -11.8568 2.9686 43 1 3.8885 -10.9287 1.0337 44 1 0.2270 -4.8061 0.0703 45 1 0.9910 -4.5428 1.6591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000268442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:42 Heat of formation + Delta-G solvation = 39.155869 kcal Electronic energy + Delta-G solvation = -25594.885065 eV Core-core repulsion = 21999.267501 eV Total energy + Delta-G solvation = -3595.617565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.87896 -39.99873 -37.85772 -36.50659 -34.49776 -32.75082 -32.20137 -31.34223 -31.09106 -28.51786 -25.89848 -24.76622 -24.33061 -23.74978 -22.94017 -22.06597 -21.18088 -19.90726 -18.79477 -17.87997 -17.23205 -17.20454 -16.50889 -15.76631 -15.62841 -15.14014 -14.66152 -14.40691 -14.24081 -14.12955 -14.07231 -13.54740 -13.52977 -13.35822 -12.95856 -12.78279 -12.56198 -12.44113 -12.16740 -12.05996 -11.40704 -11.07808 -10.97612 -10.91263 -10.80049 -10.66015 -10.43645 -10.36763 -10.09833 -10.03135 -9.78978 -9.76326 -9.63047 -9.13018 -8.92978 -8.42989 -7.00693 -5.79345 -3.09043 0.71181 0.94514 2.49941 3.00462 3.36078 3.42161 3.47618 3.49229 3.74482 3.99399 4.25980 4.37626 4.48378 4.53648 4.57308 4.63305 4.69455 4.78748 4.92183 5.00418 5.14171 5.16311 5.24919 5.35147 5.46264 5.50846 5.53123 5.63334 5.68172 5.69888 5.74608 5.79734 5.84229 6.00558 6.03059 6.12917 6.22413 6.34364 6.36922 6.52551 6.67857 6.85260 7.02372 7.54001 7.62793 7.67595 8.26435 8.38703 9.49777 10.04920 10.39998 11.43122 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.002538 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.830309 B =11031.103810 C =11269.908253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.137 4.137 13 C -0.135 4.135 14 C 0.108 3.892 15 N -0.599 5.599 16 C 0.541 3.459 17 O -0.542 6.542 18 C -0.174 4.174 19 H 0.127 0.873 20 C -0.142 4.142 21 C -0.084 4.084 22 H 0.130 0.870 23 C -0.101 4.101 24 C -0.066 4.066 25 C -0.169 4.169 26 C 0.090 3.910 27 N -0.483 5.483 28 C 0.097 3.903 29 C 0.106 3.894 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.155 0.845 43 H 0.156 0.844 44 H 0.066 0.934 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.117 -24.263 2.165 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.178 4.178 13 C -0.173 4.173 14 C -0.015 4.015 15 N -0.332 5.332 16 C 0.329 3.671 17 O -0.419 6.419 18 C -0.195 4.195 19 H 0.145 0.855 20 C -0.180 4.180 21 C -0.103 4.103 22 H 0.148 0.852 23 C -0.103 4.103 24 C -0.091 4.091 25 C -0.188 4.188 26 C -0.067 4.067 27 N -0.191 5.191 28 C -0.060 4.060 29 C -0.017 4.017 30 H 0.066 0.934 31 H 0.218 0.782 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.126 0.874 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.173 0.827 44 H 0.084 0.916 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.199 -24.525 2.127 26.280 hybrid contribution 0.082 1.742 0.425 1.794 sum 9.281 -22.783 2.552 24.733 Atomic orbital electron populations 1.69658 1.05103 1.25752 1.57467 1.24751 0.95532 0.97715 1.02837 0.86185 0.78685 0.83797 0.77493 1.21704 1.21724 1.20747 1.19199 0.90960 0.83886 1.42955 0.91182 1.42309 1.05809 0.99528 1.88573 1.20555 0.94561 0.85924 0.93155 0.93241 1.22286 0.99610 0.95272 1.00633 1.21950 0.98830 0.96074 1.00491 1.21809 0.98406 0.97675 0.83644 1.48021 1.56995 1.20495 1.07658 1.19486 0.79157 0.84559 0.83899 1.90699 1.51792 1.73533 1.25911 1.22411 1.03799 0.91335 1.01910 0.85548 1.23134 0.97943 0.95705 1.01168 1.20980 0.94106 0.99886 0.95373 0.85191 1.20153 0.95944 0.97640 0.96532 1.21516 0.92843 0.97648 0.97141 1.22174 0.98371 0.97499 1.00803 1.22791 0.97986 0.95856 0.90025 1.67718 1.03022 1.25190 1.23137 1.22694 0.93893 0.91711 0.97700 1.22115 0.94905 0.81301 1.03342 0.93444 0.78190 0.91557 0.92436 0.91903 0.91290 0.90152 0.91256 0.87357 0.87353 0.84469 0.84595 0.82759 0.82735 0.91588 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.04 13.06 55.49 0.72 -27.31 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 8 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 9 N -0.72 -17.94 5.13 -53.10 -0.27 -18.21 16 10 C 0.17 3.35 2.93 -67.59 -0.20 3.15 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.14 -2.31 5.46 -26.69 -0.15 -2.46 16 13 C -0.13 -1.68 6.08 -26.61 -0.16 -1.84 16 14 C 0.11 1.19 6.34 -3.71 -0.02 1.17 16 15 N -0.60 -8.63 2.97 -172.51 -0.51 -9.15 16 16 C 0.54 7.90 7.48 -10.98 -0.08 7.82 16 17 O -0.54 -9.99 15.67 5.56 0.09 -9.90 16 18 C -0.17 -1.77 4.77 -91.77 -0.44 -2.21 16 19 H 0.13 1.10 6.56 -51.93 -0.34 0.76 16 20 C -0.14 -1.14 9.57 -26.73 -0.26 -1.39 16 21 C -0.08 -0.80 5.58 -91.77 -0.51 -1.32 16 22 H 0.13 1.42 7.67 -51.93 -0.40 1.02 16 23 C -0.10 -0.91 5.62 -104.48 -0.59 -1.50 16 24 C -0.07 -0.56 9.89 -39.28 -0.39 -0.95 16 25 C -0.17 -1.24 10.11 -39.44 -0.40 -1.64 16 26 C 0.09 0.73 11.18 -17.55 -0.20 0.53 16 27 N -0.48 -4.81 10.36 -13.25 -0.14 -4.95 16 28 C 0.10 0.87 10.47 -17.55 -0.18 0.68 16 29 C 0.11 1.87 5.93 -3.48 -0.02 1.85 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 32 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.68 5.51 -51.93 -0.29 0.39 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.11 0.61 6.20 -51.93 -0.32 0.28 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 41 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.16 1.06 6.04 -52.49 -0.32 0.74 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.09 1.86 7.00 -51.93 -0.36 1.49 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -33.36 367.09 -9.98 -43.34 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -6.54 Total: 8.57 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -3.84 Total: -5.30 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.20 Total: -59.62 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.09 Total: -9.90 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.36 -9.98 -43.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000268442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.497 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds