Wall clock time and date at job start Tue Mar 31 2020 10:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99380 * 2 1 4 4 H 1.48501 * 109.47121 * 269.99452 * 3 2 1 5 5 H 1.48501 * 109.47380 * 30.00153 * 3 2 1 6 6 H 1.48502 * 109.47031 * 149.99961 * 3 2 1 7 7 C 1.38811 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99654 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00473 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00544 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49231 * 35.06573 * 10 9 7 12 12 C 1.53034 * 109.49816 * 275.00119 * 10 9 7 13 13 C 1.53039 * 109.54129 * 178.64794 * 12 10 9 14 14 C 1.53188 * 109.31224 * 61.36238 * 13 12 10 15 15 N 1.46923 * 108.77648 * 305.36847 * 14 13 12 16 16 C 1.34784 * 120.63216 * 233.58504 * 15 14 13 17 17 O 1.21274 * 119.99897 * 179.72777 * 16 15 14 18 18 C 1.50695 * 119.99635 * 359.97438 * 16 15 14 19 19 H 1.08994 * 115.55340 * 34.33159 * 18 16 15 20 20 C 1.53001 * 117.50091 * 248.61979 * 18 16 15 21 21 C 1.53000 * 60.00105 * 252.51523 * 20 18 16 22 22 H 1.08998 * 117.51896 * 107.48032 * 21 20 18 23 23 C 1.50696 * 117.49576 * 252.50622 * 21 20 18 24 24 C 1.38673 * 120.41778 * 188.34293 * 23 21 20 25 25 C 1.38629 * 118.42006 * 179.78598 * 24 23 21 26 26 C 1.38224 * 119.16095 * 0.51274 * 25 24 23 27 27 N 1.31859 * 120.76641 * 359.73071 * 26 25 24 28 28 C 1.31886 * 121.72058 * 359.97438 * 27 26 25 29 29 C 1.46927 * 118.74026 * 53.86164 * 15 14 13 30 30 H 0.96997 * 120.00700 * 359.97438 * 1 2 3 31 31 H 0.97007 * 119.99555 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.46244 * 58.62828 * 12 10 9 33 33 H 1.09001 * 109.46295 * 298.66986 * 12 10 9 34 34 H 1.09005 * 109.49539 * 301.41483 * 13 12 10 35 35 H 1.08998 * 109.50390 * 181.31673 * 13 12 10 36 36 H 1.09000 * 109.58866 * 185.58181 * 14 13 12 37 37 H 1.09000 * 109.58642 * 65.15528 * 14 13 12 38 38 H 1.09006 * 117.49589 * 0.02562 * 20 18 16 39 39 H 1.08995 * 117.49915 * 145.02054 * 20 18 16 40 40 H 1.08001 * 120.78878 * 0.02635 * 24 23 21 41 41 H 1.08002 * 120.42232 * 180.21656 * 25 24 23 42 42 H 1.08002 * 119.62146 * 179.69866 * 26 25 24 43 43 H 1.08000 * 119.61379 * 179.97438 * 28 27 26 44 44 H 1.09001 * 109.58608 * 65.92230 * 29 15 14 45 45 H 1.08993 * 109.58827 * 186.35713 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4474 2.6527 0.7001 6 1 3.5476 1.4404 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 7 1.3258 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9685 -3.5512 0.5909 12 6 2.4226 -4.0362 -1.4365 13 6 3.2170 -5.3442 -1.4349 14 6 2.3517 -6.4618 -0.8442 15 7 1.8774 -6.0421 0.4815 16 6 2.0779 -6.8231 1.5616 17 8 1.6859 -6.4631 2.6513 18 6 2.7942 -8.1409 1.4159 19 1 3.5855 -8.1656 0.6668 20 6 1.9750 -9.4167 1.6210 21 6 2.9907 -8.9815 2.6791 22 1 2.6023 -8.5811 3.6155 23 6 4.2634 -9.7806 2.7922 24 6 5.1459 -9.5514 3.8370 25 6 6.3020 -10.3135 3.9034 26 6 6.5402 -11.2623 2.9269 27 7 5.6808 -11.4497 1.9445 28 6 4.5683 -10.7472 1.8530 29 6 1.1748 -4.7578 0.6065 30 1 -0.4851 0.8400 0.0004 31 1 0.3557 -2.3881 0.0005 32 1 3.0274 -3.2446 -1.8790 33 1 1.5111 -4.1657 -2.0202 34 1 4.1164 -5.2228 -0.8310 35 1 3.4963 -5.6017 -2.4565 36 1 2.9446 -7.3715 -0.7491 37 1 1.4979 -6.6462 -1.4963 38 1 0.9178 -9.3029 1.8609 39 1 2.2272 -10.2810 1.0066 40 1 4.9356 -8.7998 4.5835 41 1 7.0100 -10.1645 4.7052 42 1 7.4409 -11.8568 2.9686 43 1 3.8885 -10.9287 1.0337 44 1 0.2270 -4.8061 0.0703 45 1 0.9910 -4.5428 1.6591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000268442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:41 Heat of formation + Delta-G solvation = 18.239520 kcal Electronic energy + Delta-G solvation = -25595.792066 eV Core-core repulsion = 21999.267501 eV Total energy + Delta-G solvation = -3596.524565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70810 -40.93158 -39.03250 -37.50390 -36.22100 -33.85811 -33.34016 -32.77451 -31.82341 -30.21049 -27.03832 -26.06993 -25.36408 -24.64459 -23.97005 -23.39896 -21.89931 -21.28310 -19.94342 -19.18519 -18.69475 -18.00812 -17.32483 -16.88598 -16.75718 -16.33156 -15.98505 -15.65304 -15.32079 -15.27104 -15.03208 -14.86423 -14.75189 -14.66263 -13.96392 -13.93185 -13.69233 -13.54834 -13.06147 -12.92923 -12.86172 -12.68681 -12.37989 -12.25336 -12.15928 -12.00248 -11.85054 -11.74323 -11.67239 -11.49652 -10.93529 -10.84540 -10.65113 -10.38358 -9.77791 -9.68649 -9.05332 -7.97937 -5.27632 0.10927 0.33261 1.43371 1.45207 1.46605 1.54812 1.89084 2.53826 2.66158 3.04034 3.29444 3.35042 3.57358 3.63910 3.72169 3.82539 3.88529 3.98893 4.02642 4.05088 4.09038 4.12092 4.17817 4.29331 4.34552 4.38211 4.57959 4.60210 4.71812 4.77324 4.82219 4.85422 4.92198 4.96343 5.05926 5.06965 5.15572 5.23628 5.37649 5.38456 5.41185 5.49879 5.57368 5.77465 6.23706 6.41804 7.02976 7.12023 7.29565 8.02263 8.26760 9.25325 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021454 B = 0.002538 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.830309 B =11031.103810 C =11269.908253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.736 5.736 10 C 0.168 3.832 11 H 0.028 0.972 12 C -0.128 4.128 13 C -0.126 4.126 14 C 0.105 3.895 15 N -0.599 5.599 16 C 0.535 3.465 17 O -0.591 6.591 18 C -0.175 4.175 19 H 0.151 0.849 20 C -0.118 4.118 21 C -0.088 4.088 22 H 0.108 0.892 23 C -0.108 4.108 24 C -0.082 4.082 25 C -0.167 4.167 26 C 0.083 3.917 27 N -0.506 5.506 28 C 0.093 3.907 29 C 0.119 3.881 30 H 0.252 0.748 31 H 0.374 0.626 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.103 0.897 36 H 0.119 0.881 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.160 0.840 42 H 0.178 0.822 43 H 0.176 0.824 44 H 0.071 0.929 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.007 -26.767 0.789 28.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.376 5.376 10 C 0.059 3.941 11 H 0.047 0.953 12 C -0.169 4.169 13 C -0.164 4.164 14 C -0.016 4.016 15 N -0.331 5.331 16 C 0.325 3.675 17 O -0.472 6.472 18 C -0.196 4.196 19 H 0.169 0.831 20 C -0.155 4.155 21 C -0.107 4.107 22 H 0.126 0.874 23 C -0.110 4.110 24 C -0.108 4.108 25 C -0.186 4.186 26 C -0.074 4.074 27 N -0.215 5.215 28 C -0.063 4.063 29 C -0.005 4.005 30 H 0.061 0.939 31 H 0.205 0.795 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.137 0.863 37 H 0.105 0.895 38 H 0.121 0.879 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.195 0.805 43 H 0.193 0.807 44 H 0.089 0.911 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.140 -27.086 0.721 29.296 hybrid contribution -0.467 2.452 0.924 2.662 sum 10.673 -24.634 1.645 26.897 Atomic orbital electron populations 1.69812 1.06556 1.26140 1.59336 1.25563 0.96416 1.01058 1.03623 0.85150 0.77605 0.79499 0.77567 1.21033 1.22164 1.19719 1.19526 0.91222 0.85079 1.41324 0.91005 1.42488 1.05470 1.00763 1.88860 1.20709 0.93501 0.84779 0.95153 0.95338 1.22078 1.00007 0.97336 0.97430 1.21911 0.98016 0.93776 1.02718 1.22126 0.99371 0.98387 0.81735 1.48106 1.56573 1.19020 1.09382 1.20313 0.78473 0.85792 0.82963 1.90677 1.53831 1.74883 1.27845 1.22350 1.04679 0.89372 1.03194 0.83142 1.23291 0.97217 0.95123 0.99889 1.20864 0.95194 1.00124 0.94557 0.87435 1.20122 0.95722 0.98007 0.97127 1.21755 0.93494 0.98143 0.97402 1.22436 0.98240 0.96738 1.01222 1.23251 0.98475 0.96023 0.89613 1.67762 1.03738 1.25906 1.24094 1.22978 0.94030 0.91254 0.98084 1.21666 0.95083 0.82728 1.01058 0.93934 0.79454 0.93665 0.92380 0.92242 0.87868 0.86259 0.89518 0.87922 0.83936 0.84313 0.82249 0.80469 0.80702 0.91120 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 6 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.24 -13.56 9.93 84.03 0.83 -12.73 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.92 16 9 N -0.74 -37.94 5.13 -321.90 -1.65 -39.58 16 10 C 0.17 6.82 2.93 45.21 0.13 6.95 16 11 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 12 C -0.13 -4.23 5.46 30.62 0.17 -4.06 16 13 C -0.13 -2.76 6.08 30.67 0.19 -2.57 16 14 C 0.10 1.96 6.34 86.36 0.55 2.51 16 15 N -0.60 -16.68 2.97 -818.08 -2.43 -19.10 16 16 C 0.53 15.33 7.48 87.65 0.66 15.98 16 17 O -0.59 -22.67 15.67 -3.01 -0.05 -22.71 16 18 C -0.18 -3.16 4.77 -11.54 -0.06 -3.21 16 19 H 0.15 1.98 6.56 -2.39 -0.02 1.97 16 20 C -0.12 -1.55 9.57 30.59 0.29 -1.25 16 21 C -0.09 -1.57 5.58 -11.54 -0.06 -1.63 16 22 H 0.11 2.42 7.67 -2.39 -0.02 2.40 16 23 C -0.11 -1.76 5.62 -19.77 -0.11 -1.87 16 24 C -0.08 -1.30 9.89 22.47 0.22 -1.08 16 25 C -0.17 -2.13 10.11 22.36 0.23 -1.90 16 26 C 0.08 1.14 11.18 84.69 0.95 2.09 16 27 N -0.51 -8.84 10.36 -195.84 -2.03 -10.86 16 28 C 0.09 1.40 10.47 84.67 0.89 2.29 16 29 C 0.12 4.31 5.93 86.51 0.51 4.82 16 30 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.37 20.56 7.80 -92.70 -0.72 19.84 16 32 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 34 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.12 1.38 5.51 -2.39 -0.01 1.37 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.14 0.91 6.20 -2.39 -0.01 0.90 16 40 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 41 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.18 1.69 6.04 -2.91 -0.02 1.67 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 45 H 0.06 2.56 7.00 -2.39 -0.02 2.55 16 Total: -1.00 -76.16 367.09 2.29 -73.88 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.28 Total: 28.73 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.85 Total: 0.47 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -5.82 Total: -129.16 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.71 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -76.16 2.29 -73.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000268442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.116 kcal (2) G-P(sol) polarization free energy of solvation -76.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds