Wall clock time and date at job start Tue Mar 31 2020 10:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00301 * 2 1 4 4 H 1.48503 * 109.46737 * 270.00414 * 3 2 1 5 5 H 1.48500 * 109.46711 * 29.99945 * 3 2 1 6 6 H 1.48494 * 109.46996 * 150.00095 * 3 2 1 7 7 C 1.38813 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00010 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00011 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99993 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.52424 * 325.08395 * 10 9 7 12 12 C 1.53070 * 109.62217 * 85.10793 * 10 9 7 13 13 C 1.53039 * 109.65812 * 181.16721 * 12 10 9 14 14 C 1.53191 * 109.31416 * 298.69913 * 13 12 10 15 15 N 1.46928 * 108.77343 * 54.63452 * 14 13 12 16 16 C 1.34784 * 120.62829 * 126.41175 * 15 14 13 17 17 O 1.21276 * 119.99470 * 179.97438 * 16 15 14 18 18 C 1.50698 * 119.99966 * 359.97438 * 16 15 14 19 19 H 1.09000 * 115.55268 * 34.28288 * 18 16 15 20 20 C 1.52997 * 117.50071 * 248.60632 * 18 16 15 21 21 C 1.53000 * 60.00153 * 252.51222 * 20 18 16 22 22 H 1.09002 * 117.49675 * 107.48515 * 21 20 18 23 23 C 1.50697 * 117.50073 * 252.50894 * 21 20 18 24 24 C 1.38673 * 120.42321 * 188.34108 * 23 21 20 25 25 C 1.38625 * 118.42218 * 179.77871 * 24 23 21 26 26 C 1.38223 * 119.16196 * 0.47643 * 25 24 23 27 27 N 1.31863 * 120.76282 * 359.76624 * 26 25 24 28 28 C 1.31881 * 121.72451 * 0.02562 * 27 26 25 29 29 C 1.46919 * 118.73982 * 306.39079 * 15 14 13 30 30 H 0.96998 * 120.00214 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99665 * 0.02562 * 9 7 2 32 32 H 1.09007 * 109.35101 * 61.14474 * 12 10 9 33 33 H 1.09000 * 109.44413 * 301.25018 * 12 10 9 34 34 H 1.09002 * 109.49876 * 178.74890 * 13 12 10 35 35 H 1.09001 * 109.49731 * 58.65147 * 13 12 10 36 36 H 1.08998 * 109.58966 * 294.84519 * 14 13 12 37 37 H 1.09007 * 109.70227 * 174.48874 * 14 13 12 38 38 H 1.09004 * 117.49392 * 0.02562 * 20 18 16 39 39 H 1.08994 * 117.50080 * 144.99642 * 20 18 16 40 40 H 1.08003 * 120.78427 * 0.02750 * 24 23 21 41 41 H 1.07999 * 120.41962 * 180.22227 * 25 24 23 42 42 H 1.07998 * 119.62565 * 179.74434 * 26 25 24 43 43 H 1.08003 * 119.62086 * 180.02562 * 28 27 26 44 44 H 1.09002 * 109.58751 * 173.39743 * 29 15 14 45 45 H 1.08996 * 109.58750 * 293.67928 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5648 -3.2075 0.5884 12 6 4.2619 -2.9780 -1.4365 13 6 5.0015 -4.3178 -1.4350 14 6 6.4008 -4.1235 -0.8425 15 7 6.2709 -3.5045 0.4836 16 6 6.8473 -4.0680 1.5639 17 8 6.7331 -3.5469 2.6531 18 6 7.6334 -5.3453 1.4183 19 1 8.1826 -5.4554 0.4832 20 6 7.0471 -6.6113 2.0464 21 6 8.2636 -5.9349 2.6817 22 1 8.1095 -5.3989 3.6181 23 6 9.5965 -6.6234 2.5382 24 6 10.7045 -6.1598 3.2314 25 6 11.9090 -6.8274 3.0724 26 6 11.9675 -7.9190 2.2265 27 7 10.8944 -8.3290 1.5792 28 6 9.7314 -7.7209 1.7095 29 6 5.5013 -2.2593 0.6097 30 1 -0.4850 0.8400 0.0004 31 1 3.8646 -0.3622 -0.0004 32 1 4.8284 -2.2512 -2.0187 33 1 3.2749 -3.1086 -1.8801 34 1 5.0873 -4.6872 -2.4570 35 1 4.4481 -5.0382 -0.8326 36 1 6.9862 -3.4740 -1.4932 37 1 6.8971 -5.0894 -0.7479 38 1 6.0925 -6.5202 2.5646 39 1 7.2104 -7.5541 1.5245 40 1 10.6297 -5.3016 3.8827 41 1 12.7915 -6.4961 3.5995 42 1 12.9030 -8.4420 2.0939 43 1 8.8740 -8.0859 1.1634 44 1 5.4020 -1.9962 1.6628 45 1 6.0147 -1.4572 0.0796 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000268443.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:44 Heat of formation + Delta-G solvation = 20.774592 kcal Electronic energy + Delta-G solvation = -25614.903167 eV Core-core repulsion = 22018.488531 eV Total energy + Delta-G solvation = -3596.414637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.72055 -40.94486 -39.09198 -37.52444 -36.33248 -33.94536 -33.34556 -32.93993 -31.85035 -30.64817 -27.07832 -25.91156 -25.34965 -24.59613 -23.91283 -23.36310 -21.94069 -21.40469 -20.06248 -19.47060 -18.74995 -18.00327 -17.33881 -16.88159 -16.64525 -16.35113 -16.25737 -15.63137 -15.34545 -15.24808 -15.04792 -14.87485 -14.77449 -14.63855 -14.07348 -13.96205 -13.94603 -13.53582 -13.18316 -13.00412 -12.92976 -12.69288 -12.51835 -12.20764 -12.07083 -11.97028 -11.82798 -11.78191 -11.71454 -11.52653 -10.96983 -10.86764 -10.64945 -10.37829 -9.78422 -9.71646 -9.33895 -8.05163 -5.39924 0.10941 0.33723 1.36115 1.39608 1.42184 1.46711 1.86423 2.45949 2.66376 3.04396 3.25498 3.27989 3.53933 3.57211 3.64632 3.75712 3.86069 3.95568 4.01627 4.04037 4.09125 4.11596 4.14720 4.20846 4.32573 4.37426 4.58018 4.59438 4.70130 4.75080 4.79924 4.85226 4.91522 4.94622 5.04669 5.06009 5.15614 5.23572 5.37429 5.38704 5.44435 5.52141 5.73877 5.77750 6.17923 6.39428 7.02847 7.03465 7.10724 7.77579 7.97297 9.16113 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.029260 B = 0.002511 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.692167 B =11146.954051 C =11510.708913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.064 4.064 3 Si 0.956 3.044 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.254 1.254 7 C -0.229 4.229 8 H 0.054 0.946 9 N -0.750 5.750 10 C 0.170 3.830 11 H 0.030 0.970 12 C -0.131 4.131 13 C -0.124 4.124 14 C 0.105 3.895 15 N -0.600 5.600 16 C 0.536 3.464 17 O -0.589 6.589 18 C -0.172 4.172 19 H 0.154 0.846 20 C -0.127 4.127 21 C -0.084 4.084 22 H 0.109 0.891 23 C -0.107 4.107 24 C -0.080 4.080 25 C -0.166 4.166 26 C 0.082 3.918 27 N -0.508 5.508 28 C 0.092 3.908 29 C 0.114 3.886 30 H 0.258 0.742 31 H 0.366 0.634 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.161 0.839 42 H 0.178 0.822 43 H 0.173 0.827 44 H 0.065 0.935 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.274 -17.196 0.279 32.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.255 4.255 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.179 1.179 7 C -0.360 4.360 8 H 0.072 0.928 9 N -0.393 5.393 10 C 0.062 3.938 11 H 0.049 0.951 12 C -0.171 4.171 13 C -0.162 4.162 14 C -0.017 4.017 15 N -0.332 5.332 16 C 0.326 3.674 17 O -0.470 6.470 18 C -0.193 4.193 19 H 0.172 0.828 20 C -0.164 4.164 21 C -0.104 4.104 22 H 0.127 0.873 23 C -0.109 4.109 24 C -0.106 4.106 25 C -0.185 4.185 26 C -0.074 4.074 27 N -0.216 5.216 28 C -0.064 4.064 29 C -0.010 4.010 30 H 0.067 0.933 31 H 0.199 0.801 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.137 0.863 38 H 0.115 0.885 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.179 0.821 42 H 0.195 0.805 43 H 0.190 0.810 44 H 0.083 0.917 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 27.072 -17.733 0.282 32.364 hybrid contribution -0.632 2.334 0.802 2.548 sum 26.440 -15.399 1.085 30.617 Atomic orbital electron populations 1.69880 1.07110 1.26728 1.59560 1.25510 0.96147 1.01290 1.02568 0.85399 0.78532 0.79532 0.78257 1.19945 1.22358 1.17905 1.18935 0.82298 0.93348 1.41394 0.92760 1.42654 1.02592 1.03639 1.90442 1.20600 0.90503 0.87209 0.95523 0.95133 1.22080 1.00099 0.97743 0.97174 1.21880 0.95323 0.96274 1.02774 1.22126 0.97680 1.00202 0.81643 1.48072 1.50854 1.24872 1.09354 1.20294 0.78659 0.85510 0.82973 1.90678 1.63051 1.65379 1.27912 1.22353 1.04360 0.92226 1.00333 0.82805 1.23273 0.96944 0.94984 1.01156 1.20851 0.91064 1.01817 0.96632 0.87332 1.20106 0.94301 0.97349 0.99183 1.21752 0.92308 0.99089 0.97420 1.22440 0.99219 0.96825 1.00062 1.23260 0.97532 0.94425 0.92173 1.67759 1.00070 1.30838 1.22947 1.22958 0.95892 0.91794 0.95797 1.21627 0.91278 0.86626 1.01465 0.93292 0.80068 0.91593 0.93893 0.87870 0.92153 0.89503 0.86293 0.88513 0.84081 0.84050 0.82123 0.80506 0.80974 0.91689 0.90423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.57 13.97 21.65 0.30 -63.26 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.33 16 3 Si 0.96 45.91 27.74 68.60 1.90 47.82 16 4 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.25 -11.15 6.52 99.48 0.65 -10.50 16 7 C -0.23 -13.19 10.41 84.03 0.88 -12.31 16 8 H 0.05 3.45 8.06 -2.91 -0.02 3.42 16 9 N -0.75 -35.31 4.93 -322.53 -1.59 -36.91 16 10 C 0.17 6.50 2.93 45.08 0.13 6.63 16 11 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 12 C -0.13 -4.06 5.47 30.63 0.17 -3.89 16 13 C -0.12 -2.54 6.08 30.67 0.19 -2.36 16 14 C 0.10 1.77 6.30 86.36 0.54 2.31 16 15 N -0.60 -15.39 2.97 -818.91 -2.44 -17.83 16 16 C 0.54 14.44 7.48 87.66 0.66 15.10 16 17 O -0.59 -21.44 15.67 -3.02 -0.05 -21.49 16 18 C -0.17 -2.91 4.61 -11.54 -0.05 -2.97 16 19 H 0.15 1.74 6.81 -2.39 -0.02 1.72 16 20 C -0.13 -1.76 9.57 30.59 0.29 -1.47 16 21 C -0.08 -1.43 5.58 -11.54 -0.06 -1.50 16 22 H 0.11 2.33 7.67 -2.39 -0.02 2.31 16 23 C -0.11 -1.63 5.62 -19.77 -0.11 -1.74 16 24 C -0.08 -1.12 9.89 22.47 0.22 -0.90 16 25 C -0.17 -1.85 10.11 22.36 0.23 -1.62 16 26 C 0.08 1.05 11.18 84.68 0.95 1.99 16 27 N -0.51 -8.48 10.36 -195.84 -2.03 -10.51 16 28 C 0.09 1.33 10.47 84.67 0.89 2.22 16 29 C 0.11 3.74 5.90 86.36 0.51 4.25 16 30 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 31 H 0.37 16.46 5.66 -92.70 -0.52 15.94 16 32 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 34 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.12 1.22 5.67 -2.38 -0.01 1.20 16 38 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.14 1.07 6.21 -2.39 -0.01 1.05 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.72 16 41 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 42 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 43 H 0.17 1.67 6.04 -2.91 -0.02 1.65 16 44 H 0.06 2.51 7.01 -2.39 -0.02 2.49 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -78.93 364.16 2.41 -76.52 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.42 Total: 25.24 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 5.88 Total: 0.42 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -5.75 Total: -128.51 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.05 Total: -21.49 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.90 Total: 47.82 kcal Total: -78.93 2.41 -76.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000268443.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.297 kcal (2) G-P(sol) polarization free energy of solvation -78.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds