Wall clock time and date at job start Tue Mar 31 2020 11:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47360 * 240.00014 * 3 2 1 5 5 H 1.48505 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47003 * 120.00509 * 3 2 1 7 7 C 1.38813 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00404 * 164.51733 * 7 2 1 9 9 N 1.36943 * 119.99580 * 344.52493 * 7 2 1 10 10 C 1.47013 * 121.37171 * 335.96044 * 9 7 2 11 11 C 1.50319 * 109.16349 * 222.97160 * 10 9 7 12 12 C 1.29447 * 123.65536 * 349.02306 * 11 10 9 13 13 C 1.50701 * 117.69678 * 180.85384 * 12 11 10 14 14 N 1.46510 * 109.46649 * 95.00465 * 13 12 11 15 15 C 1.34777 * 119.99531 * 180.27838 * 14 13 12 16 16 O 1.21627 * 120.00414 * 359.72053 * 15 14 13 17 17 C 1.47267 * 119.99530 * 179.72730 * 15 14 13 18 18 C 1.46688 * 126.94293 * 359.68438 * 17 15 14 19 19 C 1.34489 * 106.33051 * 179.83212 * 18 17 15 20 20 N 1.36444 * 108.85616 * 0.43569 * 19 18 17 21 21 H 0.96996 * 124.85386 * 179.73862 * 20 19 18 22 22 C 1.34661 * 110.30168 * 359.70671 * 20 19 18 23 23 C 1.50701 * 125.80696 * 180.02562 * 22 20 19 24 24 C 1.53003 * 117.49483 * 8.72595 * 23 22 20 25 25 C 1.53001 * 117.49638 * 300.06971 * 23 22 20 26 26 C 1.49973 * 124.61034 * 1.14496 * 12 11 10 27 27 C 1.47333 * 121.37511 * 155.99156 * 9 7 2 28 28 H 0.97001 * 119.99949 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.51482 * 103.06530 * 10 9 7 30 30 H 1.08993 * 109.52507 * 342.88542 * 10 9 7 31 31 H 1.07999 * 118.17041 * 169.00440 * 11 10 9 32 32 H 1.08993 * 109.47105 * 335.00851 * 13 12 11 33 33 H 1.08998 * 109.47194 * 215.00303 * 13 12 11 34 34 H 0.96998 * 120.00080 * 0.02562 * 14 13 12 35 35 H 1.08001 * 126.83166 * 359.97438 * 18 17 15 36 36 H 1.07991 * 125.56925 * 180.14492 * 19 18 17 37 37 H 1.08990 * 115.55142 * 154.39806 * 23 22 20 38 38 H 1.09005 * 117.49781 * 0.02562 * 24 23 22 39 39 H 1.08997 * 117.49640 * 145.01959 * 24 23 22 40 40 H 1.08996 * 117.49875 * 214.97854 * 25 23 22 41 41 H 1.08998 * 117.50126 * 359.97438 * 25 23 22 42 42 H 1.08998 * 109.31837 * 101.00621 * 26 12 11 43 43 H 1.08999 * 109.31348 * 220.43170 * 26 12 11 44 44 H 1.08999 * 109.77642 * 237.78208 * 27 9 7 45 45 H 1.08993 * 109.78173 * 358.59315 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0609 -1.2189 -0.2502 9 7 1.3629 -2.3667 0.3154 10 6 0.1444 -2.3661 1.1380 11 6 0.2247 -3.4841 2.1396 12 6 1.1203 -4.4180 2.1021 13 6 1.0639 -5.4856 3.1641 14 7 0.3200 -6.6410 2.6560 15 6 0.1362 -7.7219 3.4398 16 8 0.5922 -7.7402 4.5673 17 6 -0.6166 -8.8808 2.9312 18 6 -1.2341 -9.0191 1.6078 19 6 -1.8071 -10.2356 1.5831 20 7 -1.5980 -10.8460 2.7853 21 1 -1.9161 -11.7318 3.0200 22 6 -0.8863 -10.0434 3.5993 23 6 -0.4591 -10.3705 5.0070 24 6 -0.6841 -11.8018 5.4989 25 6 -1.5594 -10.6634 6.0291 26 6 2.2139 -4.5089 1.0798 27 6 1.8591 -3.6720 -0.1545 28 1 -0.4850 0.8401 0.0004 29 1 -0.7265 -2.5114 0.4988 30 1 0.0585 -1.4138 1.6611 31 1 -0.5055 -3.5094 2.9350 32 1 0.5635 -5.0919 4.0488 33 1 2.0767 -5.7919 3.4256 34 1 -0.0433 -6.6266 1.7567 35 1 -1.2278 -8.2901 0.8110 36 1 -2.3485 -10.6582 0.7497 37 1 0.4312 -9.8509 5.3609 38 1 -1.1407 -12.5068 4.8041 39 1 0.0580 -12.2235 6.1767 40 1 -1.3927 -10.3366 7.0555 41 1 -2.5921 -10.6189 5.6835 42 1 3.1442 -4.1420 1.5134 43 1 2.3437 -5.5495 0.7824 44 1 1.0847 -4.1737 -0.7348 45 1 2.7476 -3.5293 -0.7693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001091226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:31 Heat of formation + Delta-G solvation = 70.964535 kcal Electronic energy + Delta-G solvation = -25405.707677 eV Core-core repulsion = 21811.469440 eV Total energy + Delta-G solvation = -3594.238237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54549 -39.06012 -37.59423 -37.13535 -34.76764 -32.82746 -31.38640 -30.60521 -29.65334 -29.35511 -26.93524 -24.49818 -23.17182 -22.79039 -22.66922 -22.04806 -21.05452 -20.52196 -19.55760 -18.06455 -17.59610 -16.38897 -15.86399 -15.52415 -15.48954 -15.13952 -14.89773 -14.51969 -14.22646 -13.97196 -13.67151 -13.48942 -13.41195 -13.24289 -12.81558 -12.55259 -12.18871 -12.12127 -11.96242 -11.95773 -11.51623 -11.28975 -11.04612 -10.87717 -10.74449 -10.70992 -10.36021 -10.29237 -9.80598 -9.74865 -9.53970 -9.07539 -8.75052 -8.65008 -8.27443 -8.00378 -6.72355 -5.77866 -3.16568 1.59021 2.25673 2.66374 2.92168 3.40547 3.46081 3.46210 3.47651 3.74531 3.85075 4.20090 4.49588 4.51259 4.65576 4.78091 4.89431 5.07819 5.20440 5.26491 5.32915 5.39934 5.46617 5.48540 5.61556 5.63459 5.68204 5.84391 5.91810 5.98320 6.07346 6.15277 6.23429 6.38405 6.53571 6.55296 6.69340 6.75826 6.78277 6.91022 7.17859 7.21682 7.30504 7.38116 7.75400 7.84964 7.86674 8.40152 8.52796 9.21487 9.84335 10.42508 11.32556 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.030746 B = 0.002376 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.459169 B =11781.185143 C =12091.043241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.002 4.002 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.595 5.595 10 C 0.194 3.806 11 C -0.126 4.126 12 C -0.165 4.165 13 C 0.160 3.840 14 N -0.716 5.716 15 C 0.587 3.413 16 O -0.557 6.557 17 C -0.222 4.222 18 C -0.165 4.165 19 C -0.017 4.017 20 N -0.554 5.554 21 H 0.413 0.587 22 C 0.132 3.868 23 C -0.088 4.088 24 C -0.184 4.184 25 C -0.165 4.165 26 C -0.090 4.090 27 C 0.144 3.856 28 H 0.254 0.746 29 H 0.041 0.959 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.401 0.599 35 H 0.148 0.852 36 H 0.170 0.830 37 H 0.145 0.855 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.064 0.936 43 H 0.053 0.947 44 H 0.023 0.977 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.851 -24.144 6.382 25.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.147 4.147 12 C -0.165 4.165 13 C 0.037 3.963 14 N -0.366 5.366 15 C 0.376 3.624 16 O -0.438 6.438 17 C -0.232 4.232 18 C -0.189 4.189 19 C -0.144 4.144 20 N -0.149 5.149 21 H 0.249 0.751 22 C 0.014 3.986 23 C -0.107 4.107 24 C -0.222 4.222 25 C -0.203 4.203 26 C -0.129 4.129 27 C 0.018 3.982 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.235 0.765 35 H 0.166 0.834 36 H 0.187 0.813 37 H 0.162 0.838 38 H 0.105 0.895 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.666 -24.072 7.152 25.542 hybrid contribution -0.054 0.488 -0.412 0.641 sum -4.720 -23.584 6.741 24.978 Atomic orbital electron populations 1.69999 1.05161 1.25602 1.54779 1.24986 0.95400 0.98280 1.01276 0.86324 0.78814 0.83272 0.78091 1.20942 1.21651 1.21077 1.19145 0.92206 0.84383 1.41774 0.91420 1.44127 1.29239 1.01207 1.57293 1.19753 0.88745 0.94792 0.89763 1.23264 0.95954 0.96720 0.98753 1.20506 0.99846 0.97177 0.99001 1.20416 0.96048 0.84440 0.95411 1.45945 1.56548 1.16108 1.17992 1.17354 0.78852 0.81683 0.84551 1.90707 1.51815 1.81929 1.19326 1.20148 1.10861 0.95988 0.96212 1.22108 1.02618 0.97407 0.96796 1.21712 1.07697 0.95437 0.89517 1.41504 1.44153 1.16827 1.12437 0.75089 1.19286 0.96712 0.90734 0.91832 1.20858 1.02373 0.98748 0.88673 1.23034 1.03961 0.91081 1.04093 1.23031 0.95966 1.01913 0.99356 1.20787 0.96573 0.99048 0.96502 1.20987 0.97288 0.87169 0.92796 0.93572 0.94158 0.88943 0.88798 0.91804 0.91740 0.76492 0.83435 0.81258 0.83768 0.89467 0.87779 0.87760 0.88875 0.91760 0.92849 0.95866 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.23 11.08 55.49 0.61 -25.61 16 2 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 3 Si 0.91 21.79 29.58 -169.99 -5.03 16.76 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.25 -6.74 9.71 -15.06 -0.15 -6.89 16 8 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 9 N -0.60 -14.90 3.01 -173.57 -0.52 -15.43 16 10 C 0.19 4.62 5.23 -5.10 -0.03 4.59 16 11 C -0.13 -2.44 9.47 -35.78 -0.34 -2.78 16 12 C -0.16 -2.90 5.22 -100.99 -0.53 -3.43 16 13 C 0.16 2.54 5.66 -5.19 -0.03 2.51 16 14 N -0.72 -10.38 5.54 -62.61 -0.35 -10.73 16 15 C 0.59 9.04 7.81 -12.59 -0.10 8.94 16 16 O -0.56 -10.00 14.89 5.25 0.08 -9.92 16 17 C -0.22 -2.87 6.29 -103.35 -0.65 -3.52 16 18 C -0.17 -1.71 10.56 -37.50 -0.40 -2.11 16 19 C -0.02 -0.13 11.89 -16.82 -0.20 -0.33 16 20 N -0.55 -4.34 5.80 -9.11 -0.05 -4.39 16 21 H 0.41 1.96 7.84 -40.82 -0.32 1.64 16 22 C 0.13 1.45 6.69 -81.88 -0.55 0.90 16 23 C -0.09 -0.89 5.61 -91.77 -0.51 -1.41 16 24 C -0.18 -1.26 10.13 -26.69 -0.27 -1.53 16 25 C -0.17 -1.33 10.24 -26.69 -0.27 -1.60 16 26 C -0.09 -1.59 5.95 -28.09 -0.17 -1.76 16 27 C 0.14 2.98 6.59 -3.44 -0.02 2.96 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 29 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 2.45 6.41 -51.93 -0.33 2.12 16 31 H 0.09 1.66 7.73 -52.49 -0.41 1.25 16 32 H 0.06 1.05 7.78 -51.93 -0.40 0.65 16 33 H 0.06 1.04 8.11 -51.93 -0.42 0.62 16 34 H 0.40 5.23 7.59 -40.82 -0.31 4.92 16 35 H 0.15 1.33 7.70 -52.49 -0.40 0.93 16 36 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 37 H 0.14 1.78 6.64 -51.93 -0.34 1.44 16 38 H 0.09 0.44 7.08 -51.93 -0.37 0.08 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 LS Contribution 369.34 15.07 5.57 5.57 Total: -1.00 -32.49 369.34 -10.64 -43.13 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.65 Total: 6.21 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -4.30 Total: -5.59 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -0.31 Total: -56.15 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.49 -10.64 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001091226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.097 kcal (2) G-P(sol) polarization free energy of solvation -32.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds