Wall clock time and date at job start Tue Mar 31 2020 11:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48499 * 109.47360 * 240.00014 * 3 2 1 5 5 H 1.48505 * 109.47373 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47003 * 120.00509 * 3 2 1 7 7 C 1.38813 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00404 * 164.51733 * 7 2 1 9 9 N 1.36943 * 119.99580 * 344.52493 * 7 2 1 10 10 C 1.47013 * 121.37171 * 335.96044 * 9 7 2 11 11 C 1.50319 * 109.16349 * 222.97160 * 10 9 7 12 12 C 1.29447 * 123.65536 * 349.02306 * 11 10 9 13 13 C 1.50701 * 117.69678 * 180.85384 * 12 11 10 14 14 N 1.46510 * 109.46649 * 95.00465 * 13 12 11 15 15 C 1.34777 * 119.99531 * 180.27838 * 14 13 12 16 16 O 1.21627 * 120.00414 * 359.72053 * 15 14 13 17 17 C 1.47267 * 119.99530 * 179.72730 * 15 14 13 18 18 C 1.46688 * 126.94293 * 359.68438 * 17 15 14 19 19 C 1.34489 * 106.33051 * 179.83212 * 18 17 15 20 20 N 1.36444 * 108.85616 * 0.43569 * 19 18 17 21 21 H 0.96996 * 124.85386 * 179.73862 * 20 19 18 22 22 C 1.34661 * 110.30168 * 359.70671 * 20 19 18 23 23 C 1.50701 * 125.80696 * 180.02562 * 22 20 19 24 24 C 1.53003 * 117.49483 * 8.72595 * 23 22 20 25 25 C 1.53001 * 117.49638 * 300.06971 * 23 22 20 26 26 C 1.49973 * 124.61034 * 1.14496 * 12 11 10 27 27 C 1.47333 * 121.37511 * 155.99156 * 9 7 2 28 28 H 0.97001 * 119.99949 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.51482 * 103.06530 * 10 9 7 30 30 H 1.08993 * 109.52507 * 342.88542 * 10 9 7 31 31 H 1.07999 * 118.17041 * 169.00440 * 11 10 9 32 32 H 1.08993 * 109.47105 * 335.00851 * 13 12 11 33 33 H 1.08998 * 109.47194 * 215.00303 * 13 12 11 34 34 H 0.96998 * 120.00080 * 0.02562 * 14 13 12 35 35 H 1.08001 * 126.83166 * 359.97438 * 18 17 15 36 36 H 1.07991 * 125.56925 * 180.14492 * 19 18 17 37 37 H 1.08990 * 115.55142 * 154.39806 * 23 22 20 38 38 H 1.09005 * 117.49781 * 0.02562 * 24 23 22 39 39 H 1.08997 * 117.49640 * 145.01959 * 24 23 22 40 40 H 1.08996 * 117.49875 * 214.97854 * 25 23 22 41 41 H 1.08998 * 117.50126 * 359.97438 * 25 23 22 42 42 H 1.08998 * 109.31837 * 101.00621 * 26 12 11 43 43 H 1.08999 * 109.31348 * 220.43170 * 26 12 11 44 44 H 1.08999 * 109.77642 * 237.78208 * 27 9 7 45 45 H 1.08993 * 109.78173 * 358.59315 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0609 -1.2189 -0.2502 9 7 1.3629 -2.3667 0.3154 10 6 0.1444 -2.3661 1.1380 11 6 0.2247 -3.4841 2.1396 12 6 1.1203 -4.4180 2.1021 13 6 1.0639 -5.4856 3.1641 14 7 0.3200 -6.6410 2.6560 15 6 0.1362 -7.7219 3.4398 16 8 0.5922 -7.7402 4.5673 17 6 -0.6166 -8.8808 2.9312 18 6 -1.2341 -9.0191 1.6078 19 6 -1.8071 -10.2356 1.5831 20 7 -1.5980 -10.8460 2.7853 21 1 -1.9161 -11.7318 3.0200 22 6 -0.8863 -10.0434 3.5993 23 6 -0.4591 -10.3705 5.0070 24 6 -0.6841 -11.8018 5.4989 25 6 -1.5594 -10.6634 6.0291 26 6 2.2139 -4.5089 1.0798 27 6 1.8591 -3.6720 -0.1545 28 1 -0.4850 0.8401 0.0004 29 1 -0.7265 -2.5114 0.4988 30 1 0.0585 -1.4138 1.6611 31 1 -0.5055 -3.5094 2.9350 32 1 0.5635 -5.0919 4.0488 33 1 2.0767 -5.7919 3.4256 34 1 -0.0433 -6.6266 1.7567 35 1 -1.2278 -8.2901 0.8110 36 1 -2.3485 -10.6582 0.7497 37 1 0.4312 -9.8509 5.3609 38 1 -1.1407 -12.5068 4.8041 39 1 0.0580 -12.2235 6.1767 40 1 -1.3927 -10.3366 7.0555 41 1 -2.5921 -10.6189 5.6835 42 1 3.1442 -4.1420 1.5134 43 1 2.3437 -5.5495 0.7824 44 1 1.0847 -4.1737 -0.7348 45 1 2.7476 -3.5293 -0.7693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001091226.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:30 Heat of formation + Delta-G solvation = 51.247744 kcal Electronic energy + Delta-G solvation = -25406.562661 eV Core-core repulsion = 21811.469440 eV Total energy + Delta-G solvation = -3595.093221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.29018 -40.30361 -39.17850 -37.77758 -36.31521 -34.47968 -32.76903 -31.85219 -31.36187 -30.07828 -28.55383 -26.12906 -24.50533 -24.02317 -23.35508 -23.05669 -22.60175 -21.28717 -20.65018 -19.46102 -18.75884 -17.70957 -17.12017 -16.92099 -16.77770 -16.35479 -16.09675 -15.67353 -15.39530 -15.23496 -15.15676 -14.94675 -14.61540 -14.30857 -14.09670 -13.90065 -13.56868 -13.30221 -13.25516 -12.93405 -12.82548 -12.73466 -12.57441 -12.49744 -12.24837 -12.08711 -11.69951 -11.68654 -11.41126 -11.25763 -10.90265 -10.66623 -10.10836 -9.71228 -9.64032 -9.02825 -8.74097 -7.87241 -5.28547 0.70214 1.20971 1.47665 1.50661 1.54654 1.56897 2.19753 2.52237 2.54125 2.69972 2.98676 3.29661 3.54786 3.63655 3.85333 3.87364 3.98838 4.05308 4.09938 4.26239 4.32058 4.45824 4.54700 4.58282 4.67185 4.67948 4.76528 4.85430 4.89911 4.92800 4.96988 5.10383 5.12266 5.14101 5.22421 5.27109 5.39696 5.48802 5.51699 5.62275 5.78152 5.78934 5.98474 6.17814 6.34892 6.60517 6.74044 7.14372 7.38107 7.84418 8.38579 9.21269 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.030746 B = 0.002376 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.459169 B =11781.185143 C =12091.043241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.055 4.055 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.258 4.258 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.206 3.794 11 C -0.143 4.143 12 C -0.137 4.137 13 C 0.170 3.830 14 N -0.710 5.710 15 C 0.582 3.418 16 O -0.592 6.592 17 C -0.262 4.262 18 C -0.188 4.188 19 C 0.003 3.997 20 N -0.538 5.538 21 H 0.430 0.570 22 C 0.132 3.868 23 C -0.119 4.119 24 C -0.157 4.157 25 C -0.164 4.164 26 C -0.084 4.084 27 C 0.140 3.860 28 H 0.250 0.750 29 H 0.015 0.985 30 H 0.057 0.943 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.409 0.591 35 H 0.155 0.845 36 H 0.210 0.790 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.029 0.971 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 -27.038 6.121 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.249 4.249 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.388 4.388 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.081 3.919 11 C -0.164 4.164 12 C -0.138 4.138 13 C 0.047 3.953 14 N -0.361 5.361 15 C 0.373 3.627 16 O -0.475 6.475 17 C -0.272 4.272 18 C -0.211 4.211 19 C -0.125 4.125 20 N -0.134 5.134 21 H 0.270 0.730 22 C 0.013 3.987 23 C -0.138 4.138 24 C -0.194 4.194 25 C -0.202 4.202 26 C -0.122 4.122 27 C 0.014 3.986 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.245 0.755 35 H 0.173 0.827 36 H 0.226 0.774 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.047 0.953 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.742 -27.018 6.869 28.278 hybrid contribution -0.016 1.261 -0.343 1.307 sum -4.758 -25.757 6.525 26.994 Atomic orbital electron populations 1.70161 1.06494 1.25862 1.56094 1.25748 0.96188 1.01353 1.01660 0.85320 0.77505 0.79251 0.78257 1.19985 1.22031 1.20725 1.19486 0.92567 0.85619 1.41097 0.91181 1.44406 1.29403 1.02183 1.57930 1.19393 0.87757 0.94825 0.89903 1.22940 0.98119 0.96285 0.99013 1.20606 0.98305 0.96422 0.98477 1.20190 0.96363 0.84353 0.94439 1.45794 1.56401 1.15525 1.18339 1.17798 0.78523 0.82295 0.84075 1.90682 1.53377 1.82649 1.20781 1.20147 1.12820 0.96043 0.98195 1.22298 1.03675 0.99008 0.96142 1.22291 1.05883 0.94370 0.89945 1.41497 1.42895 1.17171 1.11872 0.73025 1.19349 0.96488 0.90648 0.92216 1.20717 1.02413 1.01579 0.89054 1.23168 1.03030 0.89754 1.03489 1.23096 0.95857 1.02463 0.98758 1.20724 0.96213 1.00278 0.95019 1.21169 0.97407 0.85738 0.94239 0.94108 0.96729 0.92481 0.87228 0.92374 0.91575 0.75548 0.82716 0.77378 0.86845 0.87033 0.86869 0.87808 0.88185 0.91802 0.89599 0.95285 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.89 11.08 21.65 0.24 -55.65 16 2 C -0.05 -3.09 5.01 84.86 0.43 -2.66 16 3 Si 0.97 45.44 29.58 68.60 2.03 47.47 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.26 -14.32 9.71 84.03 0.82 -13.51 16 8 H 0.07 3.77 7.88 -2.92 -0.02 3.74 16 9 N -0.62 -31.25 3.01 -703.05 -2.11 -33.36 16 10 C 0.21 10.16 5.23 85.42 0.45 10.61 16 11 C -0.14 -5.59 9.47 27.11 0.26 -5.33 16 12 C -0.14 -4.72 5.22 -15.13 -0.08 -4.80 16 13 C 0.17 5.28 5.66 85.63 0.48 5.76 16 14 N -0.71 -20.16 5.54 -470.24 -2.61 -22.77 16 15 C 0.58 18.01 7.81 86.62 0.68 18.68 16 16 O -0.59 -21.81 14.89 -4.12 -0.06 -21.87 16 17 C -0.26 -6.59 6.29 -19.04 -0.12 -6.71 16 18 C -0.19 -3.54 10.56 23.62 0.25 -3.29 16 19 C 0.00 0.03 11.89 83.12 0.99 1.02 16 20 N -0.54 -6.75 5.80 -182.72 -1.06 -7.81 16 21 H 0.43 2.35 7.84 -92.71 -0.73 1.63 16 22 C 0.13 2.72 6.69 41.78 0.28 3.00 16 23 C -0.12 -2.33 5.61 -11.54 -0.06 -2.40 16 24 C -0.16 -1.76 10.13 30.62 0.31 -1.45 16 25 C -0.16 -2.41 10.24 30.62 0.31 -2.09 16 26 C -0.08 -2.82 5.95 29.72 0.18 -2.65 16 27 C 0.14 5.68 6.59 86.32 0.57 6.25 16 28 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 3.18 6.41 -2.39 -0.02 3.17 16 31 H 0.11 3.90 7.73 -2.91 -0.02 3.88 16 32 H 0.06 1.90 7.78 -2.39 -0.02 1.88 16 33 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 34 H 0.41 10.25 7.59 -92.71 -0.70 9.55 16 35 H 0.16 2.53 7.70 -2.91 -0.02 2.51 16 36 H 0.21 0.91 8.06 -2.92 -0.02 0.89 16 37 H 0.11 2.95 6.64 -2.39 -0.02 2.94 16 38 H 0.11 0.69 7.08 -2.38 -0.02 0.67 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 2.37 7.96 -2.39 -0.02 2.35 16 Total: -1.00 -73.07 369.34 1.74 -71.33 By element: Atomic # 1 Polarization: 22.65 SS G_CDS: -0.41 Total: 22.24 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 5.73 Total: 0.43 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -5.54 Total: -119.59 kcal Atomic # 8 Polarization: -21.81 SS G_CDS: -0.06 Total: -21.87 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -73.07 1.74 -71.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001091226.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.575 kcal (2) G-P(sol) polarization free energy of solvation -73.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds