Wall clock time and date at job start Tue Mar 31 2020 11:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99894 * 2 1 4 4 H 1.48504 * 109.46788 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47041 * 299.99656 * 3 2 1 6 6 H 1.48497 * 109.47258 * 59.99785 * 3 2 1 7 7 C 1.38815 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 163.17555 * 7 2 1 9 9 N 1.36933 * 119.99826 * 343.17890 * 7 2 1 10 10 C 1.46923 * 120.63142 * 331.58665 * 9 7 2 11 11 C 1.53197 * 108.77587 * 233.88375 * 10 9 7 12 12 C 1.53031 * 109.31337 * 305.36720 * 11 10 9 13 13 N 1.46501 * 109.46301 * 181.38424 * 12 11 10 14 14 C 1.34776 * 120.00200 * 84.92562 * 13 12 11 15 15 O 1.21290 * 119.99694 * 0.02562 * 14 13 12 16 16 C 1.50696 * 120.00333 * 180.02562 * 14 13 12 17 17 H 1.09004 * 115.54736 * 34.28244 * 16 14 13 18 18 C 1.52998 * 117.50208 * 248.60914 * 16 14 13 19 19 C 1.52990 * 60.00249 * 252.51188 * 18 16 14 20 20 H 1.08999 * 117.50468 * 107.49413 * 19 18 16 21 21 C 1.50701 * 117.50016 * 252.51105 * 19 18 16 22 22 C 1.38656 * 120.78917 * 8.34028 * 21 19 18 23 23 C 1.38205 * 119.16266 * 179.80027 * 22 21 19 24 24 N 1.31864 * 120.76150 * 0.48501 * 23 22 21 25 25 C 1.31869 * 121.73091 * 359.74710 * 24 23 22 26 26 C 1.38205 * 120.76460 * 0.02562 * 25 24 23 27 27 C 1.53033 * 109.54059 * 61.36357 * 12 11 10 28 28 C 1.46930 * 120.63005 * 151.86766 * 9 7 2 29 29 H 0.97002 * 120.00123 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.59186 * 353.67075 * 10 9 7 31 31 H 1.08997 * 109.58930 * 114.09788 * 10 9 7 32 32 H 1.08998 * 109.49661 * 185.40909 * 11 10 9 33 33 H 1.09004 * 109.49379 * 65.31918 * 11 10 9 34 34 H 1.09004 * 109.45142 * 301.34683 * 12 11 10 35 35 H 0.97001 * 120.00354 * 264.93584 * 13 12 11 36 36 H 1.09003 * 117.49848 * 0.02562 * 18 16 14 37 37 H 1.09003 * 117.49703 * 145.01793 * 18 16 14 38 38 H 1.07996 * 120.41690 * 0.02562 * 22 21 19 39 39 H 1.07997 * 119.61584 * 180.25366 * 23 22 21 40 40 H 1.08001 * 119.61712 * 180.02562 * 25 24 23 41 41 H 1.07993 * 120.41930 * 180.02562 * 26 25 24 42 42 H 1.09004 * 109.50103 * 178.68363 * 27 12 11 43 43 H 1.09001 * 109.52989 * 58.60171 * 27 12 11 44 44 H 1.08998 * 109.58579 * 245.89878 * 28 9 7 45 45 H 1.09002 * 109.58437 * 6.18832 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0556 -1.2223 -0.2702 9 7 1.3695 -2.3625 0.3442 10 6 0.2276 -2.3416 1.2685 11 6 0.5037 -3.3189 2.4155 12 6 0.8198 -4.7005 1.8382 13 7 1.0520 -5.6456 2.9332 14 6 0.0098 -6.2692 3.5176 15 8 -1.1203 -6.0481 3.1365 16 6 0.2485 -7.2409 4.6443 17 1 1.0804 -6.9987 5.3057 18 6 -0.0301 -8.7205 4.3722 19 6 -0.9756 -7.9160 5.2663 20 1 -1.9536 -7.6573 4.8605 21 6 -0.9392 -8.1952 6.7467 22 6 0.0357 -9.0180 7.2901 23 6 0.0401 -9.2478 8.6529 24 7 -0.8738 -8.7028 9.4317 25 6 -1.8183 -7.9192 8.9492 26 6 -1.8833 -7.6403 7.5971 27 6 2.0730 -4.6154 0.9640 28 6 1.8147 -3.6528 -0.1995 29 1 -0.4850 0.8401 -0.0004 30 1 0.0995 -1.3357 1.6685 31 1 -0.6761 -2.6446 0.7398 32 1 -0.3752 -3.3849 3.0567 33 1 1.3541 -2.9649 2.9984 34 1 -0.0211 -5.0430 1.2351 35 1 1.9557 -5.8226 3.2379 36 1 -0.3856 -8.9911 3.3779 37 1 0.6185 -9.4518 4.8547 38 1 0.7843 -9.4706 6.6568 39 1 0.7985 -9.8842 9.0844 40 1 -2.5496 -7.4904 9.6184 41 1 -2.6589 -6.9974 7.2081 42 1 2.3110 -5.6043 0.5720 43 1 2.9090 -4.2495 1.5601 44 1 1.0404 -4.0628 -0.8479 45 1 2.7325 -3.5117 -0.7704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002847730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:29 Heat of formation + Delta-G solvation = 40.847105 kcal Electronic energy + Delta-G solvation = -25361.640425 eV Core-core repulsion = 21766.096198 eV Total energy + Delta-G solvation = -3595.544227 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80329 -39.82517 -37.84146 -36.62578 -34.43335 -32.40444 -32.04729 -31.49382 -30.10140 -29.53107 -25.80280 -24.88100 -24.14688 -23.47520 -22.27148 -21.77542 -21.08973 -20.10072 -19.22244 -17.84514 -17.09743 -16.64535 -16.35656 -15.92154 -15.75310 -14.94569 -14.86080 -14.39539 -14.21487 -14.06059 -13.89937 -13.72161 -13.53791 -13.06980 -12.73652 -12.56801 -12.43987 -12.32897 -11.93582 -11.53790 -11.41320 -11.14926 -10.97486 -10.87450 -10.75851 -10.42213 -10.24576 -10.10209 -9.89968 -9.80280 -9.78634 -9.67527 -9.47776 -9.41621 -8.75176 -8.45115 -6.70403 -5.80436 -3.23859 0.80682 0.84950 2.50864 3.16631 3.35883 3.39998 3.43704 3.45714 3.72402 4.11143 4.14986 4.33974 4.44921 4.47694 4.58054 4.73913 4.82709 4.89609 4.92156 5.21504 5.28976 5.33596 5.38989 5.42743 5.47265 5.57833 5.59343 5.61095 5.76714 5.79426 6.04553 6.06031 6.20923 6.31634 6.36719 6.40014 6.57205 6.62418 6.74295 6.87782 6.90992 7.34922 7.63708 7.65243 7.68436 7.78045 8.34512 8.43303 9.19002 9.82209 10.38906 11.28210 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.023789 B = 0.002358 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.708422 B =11872.340010 C =12387.890281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.147 4.147 12 C 0.151 3.849 13 N -0.719 5.719 14 C 0.538 3.462 15 O -0.539 6.539 16 C -0.170 4.170 17 H 0.124 0.876 18 C -0.141 4.141 19 C -0.093 4.093 20 H 0.133 0.867 21 C -0.006 4.006 22 C -0.175 4.175 23 C 0.100 3.900 24 N -0.491 5.491 25 C 0.101 3.899 26 C -0.163 4.163 27 C -0.139 4.139 28 C 0.148 3.852 29 H 0.254 0.746 30 H 0.089 0.911 31 H 0.021 0.979 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.396 0.604 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.138 0.862 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.020 0.980 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -19.649 13.591 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.048 3.952 13 N -0.368 5.368 14 C 0.324 3.676 15 O -0.416 6.416 16 C -0.192 4.192 17 H 0.142 0.858 18 C -0.178 4.178 19 C -0.111 4.111 20 H 0.150 0.850 21 C -0.014 4.014 22 C -0.195 4.195 23 C -0.057 4.057 24 N -0.200 5.200 25 C -0.056 4.056 26 C -0.182 4.182 27 C -0.179 4.179 28 C 0.021 3.979 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.039 0.961 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.229 0.771 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.174 0.826 41 H 0.156 0.844 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.038 0.962 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.404 -19.483 14.173 24.096 hybrid contribution 0.874 1.054 -0.697 1.536 sum 1.279 -18.430 13.477 22.867 Atomic orbital electron populations 1.70043 1.05281 1.25472 1.53710 1.25078 0.95294 0.98487 1.00797 0.86232 0.79325 0.83953 0.77302 1.20256 1.21686 1.21553 1.19209 0.92515 0.84746 1.41911 0.91606 1.44102 1.35981 1.01552 1.49924 1.20759 0.88712 0.98102 0.87709 1.22567 1.00454 0.95149 1.00516 1.21067 0.98766 0.88677 0.86731 1.46249 1.09013 1.44417 1.37097 1.19486 0.85144 0.80550 0.82444 1.90720 1.22565 1.64372 1.63940 1.22389 1.01229 0.95145 1.00429 0.85789 1.23132 1.01686 0.91488 1.01543 1.21087 0.96824 1.03541 0.89658 0.84964 1.19562 0.93883 0.94114 0.93818 1.22068 1.00143 1.00375 0.96872 1.22746 0.96092 0.96679 0.90181 1.67676 1.03372 1.08770 1.40203 1.22791 0.95587 0.93857 0.93347 1.22070 1.00300 1.01233 0.94627 1.22336 0.96684 0.99745 0.99090 1.20842 0.98011 0.86745 0.92300 0.93607 0.89240 0.96124 0.92895 0.92678 0.90037 0.77088 0.87375 0.87377 0.84650 0.82737 0.82584 0.84419 0.92624 0.91840 0.96191 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.29 11.20 55.49 0.62 -25.66 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 8 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.71 2.99 -172.31 -0.52 -15.22 16 10 C 0.17 4.21 5.31 -3.71 -0.02 4.19 16 11 C -0.15 -2.90 5.65 -26.61 -0.15 -3.05 16 12 C 0.15 2.56 2.41 -67.90 -0.16 2.40 16 13 N -0.72 -9.64 5.08 -53.77 -0.27 -9.91 16 14 C 0.54 7.51 7.58 -10.99 -0.08 7.43 16 15 O -0.54 -9.78 15.92 5.55 0.09 -9.69 16 16 C -0.17 -1.66 5.84 -91.78 -0.54 -2.19 16 17 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.14 -1.09 9.59 -26.74 -0.26 -1.35 16 19 C -0.09 -0.87 5.59 -91.78 -0.51 -1.39 16 20 H 0.13 1.44 7.67 -51.93 -0.40 1.05 16 21 C -0.01 -0.05 5.64 -104.31 -0.59 -0.64 16 22 C -0.17 -1.33 9.39 -39.44 -0.37 -1.70 16 23 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 24 N -0.49 -4.94 10.36 -13.25 -0.14 -5.08 16 25 C 0.10 0.89 11.18 -17.55 -0.20 0.70 16 26 C -0.16 -1.44 9.84 -39.44 -0.39 -1.83 16 27 C -0.14 -2.24 5.55 -26.61 -0.15 -2.39 16 28 C 0.15 3.01 6.52 -3.71 -0.02 2.98 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 35 H 0.40 4.12 8.60 -40.82 -0.35 3.77 16 36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.11 0.58 6.25 -51.93 -0.32 0.25 16 38 H 0.14 0.71 6.16 -52.49 -0.32 0.39 16 39 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 41 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 LS Contribution 367.98 15.07 5.55 5.55 Total: -1.00 -33.03 367.98 -10.28 -43.31 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -6.72 Total: 3.46 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -3.86 Total: -3.30 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: -0.30 Total: -55.88 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.69 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.03 -10.28 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002847730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.160 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds