Wall clock time and date at job start Tue Mar 31 2020 11:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00115 * 2 1 4 4 H 1.48500 * 109.47431 * 270.00636 * 3 2 1 5 5 H 1.48497 * 109.46840 * 30.00665 * 3 2 1 6 6 H 1.48503 * 109.47208 * 150.00237 * 3 2 1 7 7 C 1.38819 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99717 * 163.07445 * 7 2 1 9 9 N 1.36932 * 119.99714 * 343.07504 * 7 2 1 10 10 C 1.46930 * 120.63250 * 331.83421 * 9 7 2 11 11 C 1.53191 * 108.77450 * 233.58446 * 10 9 7 12 12 C 1.53038 * 109.31377 * 305.36759 * 11 10 9 13 13 N 1.46499 * 109.46099 * 181.38447 * 12 11 10 14 14 C 1.34775 * 120.00194 * 154.96925 * 13 12 11 15 15 O 1.21279 * 120.00178 * 0.02562 * 14 13 12 16 16 C 1.50703 * 120.00013 * 180.27689 * 14 13 12 17 17 H 1.08996 * 110.72021 * 297.80250 * 16 14 13 18 18 C 1.54415 * 110.80908 * 174.20872 * 16 14 13 19 19 C 1.51060 * 105.14888 * 215.61174 * 18 16 14 20 20 C 1.38618 * 131.51622 * 197.04760 * 19 18 16 21 21 C 1.38213 * 119.09899 * 180.02562 * 20 19 18 22 22 N 1.31893 * 120.70502 * 359.97438 * 21 20 19 23 23 C 1.31827 * 121.78903 * 0.03329 * 22 21 20 24 24 C 1.38343 * 120.75719 * 359.94087 * 23 22 21 25 25 C 1.51181 * 131.26802 * 180.02562 * 24 23 22 26 26 C 1.53038 * 109.52941 * 61.36754 * 12 11 10 27 27 C 1.46932 * 120.62894 * 151.80945 * 9 7 2 28 28 H 0.96997 * 119.99692 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.58437 * 113.79810 * 10 9 7 30 30 H 1.08996 * 109.58457 * 353.37583 * 10 9 7 31 31 H 1.08997 * 109.49417 * 185.41065 * 11 10 9 32 32 H 1.09001 * 109.49351 * 65.31411 * 11 10 9 33 33 H 1.08995 * 109.45788 * 301.35587 * 12 11 10 34 34 H 0.97004 * 119.99705 * 334.97609 * 13 12 11 35 35 H 1.08994 * 110.31077 * 334.53603 * 18 16 14 36 36 H 1.09000 * 110.30455 * 96.70019 * 18 16 14 37 37 H 1.08001 * 120.45859 * 359.97438 * 20 19 18 38 38 H 1.07992 * 119.65105 * 180.02562 * 21 20 19 39 39 H 1.08006 * 119.62380 * 180.02562 * 23 22 21 40 40 H 1.08998 * 110.29785 * 44.04271 * 25 24 23 41 41 H 1.08992 * 110.30004 * 281.90043 * 25 24 23 42 42 H 1.09000 * 109.49618 * 58.58653 * 26 12 11 43 43 H 1.09001 * 109.49759 * 178.67484 * 26 12 11 44 44 H 1.08997 * 109.58802 * 246.20006 * 27 9 7 45 45 H 1.09001 * 109.58464 * 6.48555 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0552 -1.2222 -0.2728 9 7 1.3701 -2.3625 0.3442 10 6 0.2262 -2.3410 1.2661 11 6 0.4977 -3.3212 2.4116 12 6 0.8121 -4.7023 1.8321 13 7 1.0399 -5.6502 2.9258 14 6 0.8358 -6.9678 2.7290 15 8 0.4641 -7.3689 1.6465 16 6 1.0641 -7.9421 3.8559 17 1 2.1066 -7.9270 4.1735 18 6 0.6317 -9.3665 3.4454 19 6 0.0569 -9.9814 4.6998 20 6 -0.2028 -11.2996 5.0411 21 6 -0.7428 -11.5786 6.2824 22 7 -1.0089 -10.6078 7.1348 23 6 -0.7747 -9.3438 6.8429 24 6 -0.2348 -8.9884 5.6197 25 6 0.1258 -7.6381 5.0433 26 6 2.0675 -4.6179 0.9609 27 6 1.8137 -3.6527 -0.2013 28 1 -0.4849 0.8400 0.0004 29 1 -0.6769 -2.6410 0.7347 30 1 0.0995 -1.3357 1.6676 31 1 -0.3828 -3.3866 3.0507 32 1 1.3476 -2.9703 2.9969 33 1 -0.0280 -5.0418 1.2265 34 1 1.3374 -5.3294 3.7915 35 1 -0.1270 -9.3213 2.6643 36 1 1.4937 -9.9398 3.1040 37 1 0.0130 -12.0977 4.3463 38 1 -0.9483 -12.6024 6.5578 39 1 -1.0056 -8.5769 7.5675 40 1 0.6424 -7.0343 5.7894 41 1 -0.7699 -7.1245 4.6943 42 1 2.9024 -4.2547 1.5601 43 1 2.3044 -5.6064 0.5675 44 1 1.0400 -4.0597 -0.8522 45 1 2.7330 -3.5124 -0.7699 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003634384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:40 Heat of formation + Delta-G solvation = 11.398239 kcal Electronic energy + Delta-G solvation = -25720.092899 eV Core-core repulsion = 22123.271673 eV Total energy + Delta-G solvation = -3596.821226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.21906 -39.74681 -37.60689 -36.37993 -34.49733 -32.42222 -32.05208 -30.61698 -30.05244 -29.28841 -28.01560 -25.39916 -24.20150 -22.49026 -22.19300 -22.03137 -21.42970 -20.05573 -19.21336 -17.54818 -16.98834 -16.81129 -16.34355 -16.01257 -15.36660 -15.05906 -14.76123 -14.59741 -14.01819 -13.82560 -13.79634 -13.58630 -13.31063 -13.24889 -13.01272 -12.62751 -12.59267 -12.32480 -11.86296 -11.68239 -11.61263 -11.48554 -11.15457 -10.90335 -10.73521 -10.53576 -10.32299 -10.08050 -9.96876 -9.82894 -9.73255 -9.66923 -9.49740 -9.20490 -8.78077 -8.48945 -6.71487 -5.82645 -3.24847 0.79380 0.94784 2.63755 3.20400 3.35291 3.42308 3.44317 3.47151 3.87519 4.05831 4.23238 4.46882 4.53075 4.61950 4.64683 4.74875 5.01287 5.10515 5.14001 5.29771 5.34053 5.38579 5.41275 5.46685 5.51535 5.54259 5.60462 5.72358 5.80051 5.83328 6.03091 6.03956 6.22354 6.28835 6.37986 6.48730 6.50876 6.54679 6.75879 6.85723 6.95507 7.27850 7.54512 7.65292 7.66375 7.76864 8.29178 8.41588 9.17674 9.80837 10.37829 11.26349 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.036226 B = 0.002353 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.746293 B =11895.042394 C =12314.593546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.150 3.850 13 N -0.720 5.720 14 C 0.520 3.480 15 O -0.538 6.538 16 C -0.111 4.111 17 H 0.109 0.891 18 C -0.070 4.070 19 C -0.049 4.049 20 C -0.160 4.160 21 C 0.095 3.905 22 N -0.486 5.486 23 C 0.113 3.887 24 C -0.149 4.149 25 C -0.068 4.068 26 C -0.138 4.138 27 C 0.147 3.853 28 H 0.254 0.746 29 H 0.021 0.979 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.396 0.604 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.155 0.845 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 -19.175 13.057 23.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.047 3.953 13 N -0.370 5.370 14 C 0.305 3.695 15 O -0.415 6.415 16 C -0.133 4.133 17 H 0.127 0.873 18 C -0.107 4.107 19 C -0.057 4.057 20 C -0.180 4.180 21 C -0.061 4.061 22 N -0.194 5.194 23 C -0.044 4.044 24 C -0.151 4.151 25 C -0.106 4.106 26 C -0.179 4.179 27 C 0.020 3.980 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.230 0.770 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.152 0.848 38 H 0.175 0.825 39 H 0.172 0.828 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.158 -19.505 13.064 23.477 hybrid contribution 0.940 1.158 -0.376 1.538 sum 1.098 -18.347 12.688 22.334 Atomic orbital electron populations 1.70023 1.05263 1.25567 1.53903 1.25063 0.95297 0.98455 1.00870 0.86304 0.79132 0.83613 0.77762 1.21368 1.21550 1.20505 1.19171 0.92566 0.84728 1.41741 0.91674 1.44096 1.35842 1.01672 1.49949 1.20745 0.88904 0.97918 0.87680 1.22533 1.00531 0.94716 1.00838 1.21070 0.98546 0.88259 0.87458 1.46343 1.68338 1.06419 1.15887 1.20184 0.77309 0.83120 0.88926 1.90708 1.46239 1.78214 1.26370 1.22042 1.01786 0.94813 0.94634 0.87291 1.20952 1.01994 0.92896 0.94858 1.20931 0.95278 0.93369 0.96113 1.21651 1.01743 0.96101 0.98470 1.22715 0.94879 0.98765 0.89784 1.67732 1.16752 1.00481 1.34453 1.22246 0.94693 0.93248 0.94165 1.21496 1.01080 0.96798 0.95711 1.20929 0.99725 0.93999 0.95903 1.22367 0.97119 0.99514 0.98882 1.20874 0.97920 0.86568 0.92629 0.93578 0.96116 0.89009 0.92732 0.92149 0.90019 0.77012 0.87608 0.89600 0.84781 0.82537 0.82818 0.89329 0.89141 0.92321 0.92774 0.96210 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.78 11.20 55.49 0.62 -25.16 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 7 C -0.25 -6.81 9.58 -15.06 -0.14 -6.95 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.56 2.99 -172.32 -0.52 -15.08 16 10 C 0.17 3.99 5.30 -3.71 -0.02 3.97 16 11 C -0.15 -2.55 5.55 -26.61 -0.15 -2.70 16 12 C 0.15 2.47 2.42 -67.89 -0.16 2.31 16 13 N -0.72 -9.07 5.02 -53.77 -0.27 -9.34 16 14 C 0.52 6.70 7.03 -10.98 -0.08 6.62 16 15 O -0.54 -9.15 15.22 5.56 0.08 -9.07 16 16 C -0.11 -1.01 3.47 -90.31 -0.31 -1.33 16 17 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 18 C -0.07 -0.66 6.06 -26.97 -0.16 -0.82 16 19 C -0.05 -0.45 6.20 -104.22 -0.65 -1.10 16 20 C -0.16 -1.32 10.12 -39.45 -0.40 -1.71 16 21 C 0.10 0.81 11.19 -17.53 -0.20 0.62 16 22 N -0.49 -5.02 10.36 -13.22 -0.14 -5.16 16 23 C 0.11 1.05 11.19 -17.52 -0.20 0.85 16 24 C -0.15 -1.35 6.19 -104.26 -0.64 -2.00 16 25 C -0.07 -0.54 6.25 -26.93 -0.17 -0.70 16 26 C -0.14 -2.44 5.65 -26.62 -0.15 -2.59 16 27 C 0.15 3.11 6.52 -3.71 -0.02 3.08 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 34 H 0.40 3.87 8.59 -40.82 -0.35 3.52 16 35 H 0.11 1.19 7.07 -51.93 -0.37 0.82 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.79 7.88 -51.93 -0.41 0.38 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 LS Contribution 362.07 15.07 5.46 5.46 Total: -1.00 -32.16 362.07 -10.20 -42.36 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.87 Total: 2.23 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.54 Total: -2.50 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.30 Total: -54.74 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.16 -10.20 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003634384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.761 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds