Wall clock time and date at job start Tue Mar 31 2020 10:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00424 * 2 1 4 4 H 1.48503 * 109.47047 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47269 * 240.00087 * 3 2 1 6 6 H 1.48499 * 109.47206 * 119.99829 * 3 2 1 7 7 C 1.38816 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00301 * 210.86738 * 7 2 1 9 9 N 1.36942 * 119.99630 * 30.87114 * 7 2 1 10 10 C 1.46925 * 120.63104 * 27.02764 * 9 7 2 11 11 C 1.53199 * 108.77378 * 126.36962 * 10 9 7 12 12 C 1.53035 * 109.31330 * 54.63168 * 11 10 9 13 13 C 1.53041 * 109.54201 * 298.63751 * 12 11 10 14 14 H 1.09007 * 109.49226 * 301.41001 * 13 12 11 15 15 N 1.46495 * 109.49973 * 181.31749 * 13 12 11 16 16 C 1.34779 * 119.99925 * 154.99600 * 15 13 12 17 17 O 1.21552 * 120.00200 * 0.02562 * 16 15 13 18 18 C 1.47844 * 120.00088 * 179.97438 * 16 15 13 19 19 C 1.40023 * 120.55498 * 2.79522 * 18 16 15 20 20 C 1.38360 * 118.29030 * 179.97438 * 19 18 16 21 21 C 1.38356 * 119.29718 * 0.02562 * 20 19 18 22 22 N 1.31923 * 121.08347 * 359.97438 * 21 20 19 23 23 C 1.31703 * 121.87712 * 359.76718 * 22 21 20 24 24 C 1.50696 * 119.71602 * 180.24403 * 23 22 21 25 25 C 1.53000 * 117.50019 * 351.74467 * 24 23 22 26 26 C 1.53002 * 117.50048 * 283.08345 * 24 23 22 27 27 C 1.46931 * 120.62837 * 206.74548 * 9 7 2 28 28 H 0.96994 * 120.00649 * 182.03061 * 1 2 3 29 29 H 1.08997 * 109.58548 * 246.15103 * 10 9 7 30 30 H 1.09001 * 109.58892 * 6.58211 * 10 9 7 31 31 H 1.08997 * 109.49279 * 174.58430 * 11 10 9 32 32 H 1.08997 * 109.49205 * 294.67995 * 11 10 9 33 33 H 1.09008 * 109.46132 * 58.65303 * 12 11 10 34 34 H 1.08997 * 109.46241 * 178.62487 * 12 11 10 35 35 H 0.97001 * 120.00111 * 334.99416 * 15 13 12 36 36 H 1.08002 * 120.86103 * 359.95583 * 19 18 16 37 37 H 1.07995 * 120.35213 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.45898 * 180.02562 * 21 20 19 39 39 H 1.08994 * 115.55114 * 137.41336 * 24 23 22 40 40 H 1.09007 * 117.50091 * 359.97438 * 25 24 23 41 41 H 1.09003 * 117.50206 * 145.02168 * 25 24 23 42 42 H 1.08996 * 117.50147 * 214.97826 * 26 24 23 43 43 H 1.08999 * 117.49671 * 359.97438 * 26 24 23 44 44 H 1.09004 * 109.58537 * 353.42064 * 27 9 7 45 45 H 1.08993 * 109.58373 * 113.84264 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9755 -1.2683 0.4804 9 7 1.4709 -2.3044 -0.6075 10 6 0.5252 -2.1568 -1.7222 11 6 1.0314 -2.9805 -2.9106 12 6 1.2564 -4.4270 -2.4645 13 6 2.3189 -4.4639 -1.3637 14 1 3.2461 -4.0300 -1.7384 15 7 2.5563 -5.8518 -0.9594 16 6 3.7371 -6.2016 -0.4118 17 8 4.6050 -5.3654 -0.2530 18 6 3.9765 -7.6021 -0.0033 19 6 3.0072 -8.5862 -0.2329 20 6 3.2805 -9.8820 0.1680 21 6 4.4908 -10.1611 0.7775 22 7 5.3855 -9.2132 0.9810 23 6 5.1739 -7.9665 0.6130 24 6 6.2322 -6.9235 0.8645 25 6 7.4362 -7.3299 1.7166 26 6 6.3735 -6.3902 2.2915 27 6 1.8317 -3.6570 -0.1616 28 1 -0.4851 -0.8394 0.0298 29 1 -0.4570 -2.5189 -1.4186 30 1 0.4577 -1.1069 -2.0077 31 1 0.2915 -2.9574 -3.7106 32 1 1.9705 -2.5605 -3.2706 33 1 0.3224 -4.8384 -2.0815 34 1 1.5933 -5.0209 -3.3141 35 1 1.8636 -6.5190 -1.0857 36 1 2.0703 -8.3402 -0.7104 37 1 2.5568 -10.6672 0.0069 38 1 4.7070 -11.1717 1.0911 39 1 6.4075 -6.2249 0.0465 40 1 7.4627 -8.3516 2.0957 41 1 8.4036 -6.8983 1.4594 42 1 6.6421 -5.3408 2.4124 43 1 5.7007 -6.7934 3.0484 44 1 2.6260 -3.5967 0.5825 45 1 0.9583 -4.1439 0.2720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007781390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:44 Heat of formation + Delta-G solvation = 46.741424 kcal Electronic energy + Delta-G solvation = -26399.378641 eV Core-core repulsion = 22804.090010 eV Total energy + Delta-G solvation = -3595.288630 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.98327 -39.25248 -37.49813 -36.86480 -34.55599 -33.13582 -32.26132 -31.37252 -30.43224 -28.73002 -25.09337 -24.87445 -24.63763 -22.47473 -22.22638 -21.95415 -21.00277 -20.35863 -19.49239 -17.71183 -17.37787 -17.09532 -16.46762 -15.54848 -15.32894 -15.02408 -14.75816 -14.37565 -14.29145 -14.09432 -13.76361 -13.57083 -13.33975 -13.27491 -12.81244 -12.68546 -12.36271 -12.06094 -11.89745 -11.45949 -11.23982 -10.82857 -10.75719 -10.67349 -10.46967 -10.40053 -10.13639 -10.10385 -10.03693 -10.00296 -9.95964 -9.43920 -9.31782 -9.13030 -8.90375 -8.22676 -6.87884 -6.14444 -3.18016 0.45487 0.89768 2.86476 3.17082 3.52913 3.56063 3.56947 3.74086 3.90015 4.02869 4.42444 4.43532 4.53779 4.62294 4.78938 5.02325 5.05292 5.12677 5.13981 5.20457 5.29300 5.35104 5.44118 5.53045 5.57104 5.70856 5.72892 5.78504 5.90315 5.92447 6.00168 6.09030 6.21254 6.24587 6.34155 6.37034 6.40075 6.51883 6.55718 6.68531 6.85529 7.02184 7.13334 7.57256 7.69506 8.06321 8.31796 8.58642 9.11129 9.86387 10.29418 11.19238 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.003494 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.387158 B = 8011.266868 C = 9200.633535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.020 4.020 3 Si 1.062 2.938 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.357 4.357 8 H 0.057 0.943 9 N -0.593 5.593 10 C 0.149 3.851 11 C -0.134 4.134 12 C -0.115 4.115 13 C 0.127 3.873 14 H 0.089 0.911 15 N -0.718 5.718 16 C 0.558 3.442 17 O -0.517 6.517 18 C -0.177 4.177 19 C -0.042 4.042 20 C -0.188 4.188 21 C 0.123 3.877 22 N -0.486 5.486 23 C 0.218 3.782 24 C -0.110 4.110 25 C -0.169 4.169 26 C -0.151 4.151 27 C 0.145 3.855 28 H 0.268 0.732 29 H 0.017 0.983 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.392 0.608 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.143 0.857 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.060 0.940 45 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.746 -20.835 -2.176 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.223 4.223 3 Si 0.891 3.109 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.486 4.486 8 H 0.075 0.925 9 N -0.317 5.317 10 C 0.023 3.977 11 C -0.174 4.174 12 C -0.154 4.154 13 C 0.022 3.978 14 H 0.107 0.893 15 N -0.368 5.368 16 C 0.344 3.656 17 O -0.393 6.393 18 C -0.182 4.182 19 C -0.069 4.069 20 C -0.208 4.208 21 C -0.035 4.035 22 N -0.195 5.195 23 C 0.080 3.920 24 C -0.129 4.129 25 C -0.206 4.206 26 C -0.189 4.189 27 C 0.017 3.983 28 H 0.078 0.922 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.226 0.774 36 H 0.156 0.844 37 H 0.158 0.842 38 H 0.177 0.823 39 H 0.160 0.840 40 H 0.121 0.879 41 H 0.113 0.887 42 H 0.120 0.880 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 6.982 -18.725 -1.657 20.053 hybrid contribution -1.217 -2.075 -0.477 2.453 sum 5.765 -20.800 -2.134 21.690 Atomic orbital electron populations 1.70811 1.06710 1.30080 1.47109 1.25815 0.96264 1.01465 0.98724 0.83563 0.74961 0.75934 0.76408 1.21165 1.21981 1.21890 1.19938 1.01546 0.89642 1.37447 0.92481 1.44051 1.52473 1.00472 1.34681 1.20971 0.91145 0.99461 0.86157 1.22054 1.01393 0.94489 0.99428 1.21679 0.98089 0.98445 0.97137 1.21660 0.99647 0.79589 0.96870 0.89295 1.46047 1.15711 1.11902 1.63187 1.17950 0.82637 0.87038 0.78012 1.90776 1.43427 1.51319 1.53792 1.20857 0.96832 0.95124 1.05429 1.21781 0.97972 0.92565 0.94541 1.22075 0.99386 0.97319 1.02026 1.22967 0.89190 0.98580 0.92747 1.67525 1.32789 1.00497 1.18663 1.20595 0.91381 0.90789 0.89200 1.21174 0.95782 0.98488 0.97448 1.22998 0.93292 1.00706 1.03597 1.22863 1.01989 0.99892 0.94169 1.21076 0.97333 0.86330 0.93521 0.92162 0.96500 0.90360 0.92442 0.91951 0.92254 0.92756 0.77397 0.84385 0.84169 0.82281 0.83971 0.87888 0.88728 0.88017 0.89340 0.92129 0.96864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.16 12.60 55.49 0.70 -26.46 16 2 C -0.02 -0.57 4.51 -17.43 -0.08 -0.65 16 3 Si 1.06 25.59 30.02 -169.99 -5.10 20.48 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.36 -10.19 9.43 -15.06 -0.14 -10.33 16 8 H 0.06 1.68 7.99 -52.48 -0.42 1.26 16 9 N -0.59 -14.95 2.85 -172.58 -0.49 -15.44 16 10 C 0.15 3.39 4.81 -3.71 -0.02 3.37 16 11 C -0.13 -2.40 6.08 -26.61 -0.16 -2.56 16 12 C -0.12 -1.77 5.36 -26.69 -0.14 -1.92 16 13 C 0.13 2.23 2.59 -68.04 -0.18 2.06 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 N -0.72 -10.12 5.03 -54.85 -0.28 -10.39 16 16 C 0.56 8.64 7.72 -12.33 -0.10 8.55 16 17 O -0.52 -9.76 13.12 5.32 0.07 -9.69 16 18 C -0.18 -2.29 5.89 -104.82 -0.62 -2.91 16 19 C -0.04 -0.40 9.64 -38.87 -0.37 -0.77 16 20 C -0.19 -1.47 10.10 -39.49 -0.40 -1.87 16 21 C 0.12 1.10 11.17 -17.47 -0.20 0.90 16 22 N -0.49 -5.87 9.32 -9.15 -0.09 -5.95 16 23 C 0.22 2.95 6.49 -82.18 -0.53 2.41 16 24 C -0.11 -1.53 4.47 -91.77 -0.41 -1.94 16 25 C -0.17 -1.97 10.03 -26.69 -0.27 -2.23 16 26 C -0.15 -1.97 10.24 -26.69 -0.27 -2.24 16 27 C 0.14 3.15 6.06 -3.93 -0.02 3.12 16 28 H 0.27 8.07 7.05 -40.82 -0.29 7.78 16 29 H 0.02 0.39 7.97 -51.93 -0.41 -0.02 16 30 H 0.08 2.00 6.43 -51.93 -0.33 1.67 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.39 4.19 6.72 -40.82 -0.27 3.91 16 36 H 0.14 0.93 6.53 -52.49 -0.34 0.59 16 37 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.16 0.89 8.06 -52.48 -0.42 0.47 16 39 H 0.14 2.20 6.33 -51.93 -0.33 1.87 16 40 H 0.10 1.18 7.57 -51.92 -0.39 0.79 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.44 7.93 -51.93 -0.41 1.03 16 45 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -33.15 362.19 -10.26 -43.41 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -6.62 Total: 5.59 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -3.91 Total: -7.01 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: -0.15 Total: -58.25 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.07 Total: -9.69 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.10 Total: 20.48 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.15 -10.26 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007781390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.153 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds