Wall clock time and date at job start Tue Mar 31 2020 10:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00424 * 2 1 4 4 H 1.48503 * 109.47047 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47269 * 240.00087 * 3 2 1 6 6 H 1.48499 * 109.47206 * 119.99829 * 3 2 1 7 7 C 1.38816 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00301 * 210.86738 * 7 2 1 9 9 N 1.36942 * 119.99630 * 30.87114 * 7 2 1 10 10 C 1.46925 * 120.63104 * 27.02764 * 9 7 2 11 11 C 1.53199 * 108.77378 * 126.36962 * 10 9 7 12 12 C 1.53035 * 109.31330 * 54.63168 * 11 10 9 13 13 C 1.53041 * 109.54201 * 298.63751 * 12 11 10 14 14 H 1.09007 * 109.49226 * 301.41001 * 13 12 11 15 15 N 1.46495 * 109.49973 * 181.31749 * 13 12 11 16 16 C 1.34779 * 119.99925 * 154.99600 * 15 13 12 17 17 O 1.21552 * 120.00200 * 0.02562 * 16 15 13 18 18 C 1.47844 * 120.00088 * 179.97438 * 16 15 13 19 19 C 1.40023 * 120.55498 * 2.79522 * 18 16 15 20 20 C 1.38360 * 118.29030 * 179.97438 * 19 18 16 21 21 C 1.38356 * 119.29718 * 0.02562 * 20 19 18 22 22 N 1.31923 * 121.08347 * 359.97438 * 21 20 19 23 23 C 1.31703 * 121.87712 * 359.76718 * 22 21 20 24 24 C 1.50696 * 119.71602 * 180.24403 * 23 22 21 25 25 C 1.53000 * 117.50019 * 351.74467 * 24 23 22 26 26 C 1.53002 * 117.50048 * 283.08345 * 24 23 22 27 27 C 1.46931 * 120.62837 * 206.74548 * 9 7 2 28 28 H 0.96994 * 120.00649 * 182.03061 * 1 2 3 29 29 H 1.08997 * 109.58548 * 246.15103 * 10 9 7 30 30 H 1.09001 * 109.58892 * 6.58211 * 10 9 7 31 31 H 1.08997 * 109.49279 * 174.58430 * 11 10 9 32 32 H 1.08997 * 109.49205 * 294.67995 * 11 10 9 33 33 H 1.09008 * 109.46132 * 58.65303 * 12 11 10 34 34 H 1.08997 * 109.46241 * 178.62487 * 12 11 10 35 35 H 0.97001 * 120.00111 * 334.99416 * 15 13 12 36 36 H 1.08002 * 120.86103 * 359.95583 * 19 18 16 37 37 H 1.07995 * 120.35213 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.45898 * 180.02562 * 21 20 19 39 39 H 1.08994 * 115.55114 * 137.41336 * 24 23 22 40 40 H 1.09007 * 117.50091 * 359.97438 * 25 24 23 41 41 H 1.09003 * 117.50206 * 145.02168 * 25 24 23 42 42 H 1.08996 * 117.50147 * 214.97826 * 26 24 23 43 43 H 1.08999 * 117.49671 * 359.97438 * 26 24 23 44 44 H 1.09004 * 109.58537 * 353.42064 * 27 9 7 45 45 H 1.08993 * 109.58373 * 113.84264 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 2.9755 -1.2683 0.4804 9 7 1.4709 -2.3044 -0.6075 10 6 0.5252 -2.1568 -1.7222 11 6 1.0314 -2.9805 -2.9106 12 6 1.2564 -4.4270 -2.4645 13 6 2.3189 -4.4639 -1.3637 14 1 3.2461 -4.0300 -1.7384 15 7 2.5563 -5.8518 -0.9594 16 6 3.7371 -6.2016 -0.4118 17 8 4.6050 -5.3654 -0.2530 18 6 3.9765 -7.6021 -0.0033 19 6 3.0072 -8.5862 -0.2329 20 6 3.2805 -9.8820 0.1680 21 6 4.4908 -10.1611 0.7775 22 7 5.3855 -9.2132 0.9810 23 6 5.1739 -7.9665 0.6130 24 6 6.2322 -6.9235 0.8645 25 6 7.4362 -7.3299 1.7166 26 6 6.3735 -6.3902 2.2915 27 6 1.8317 -3.6570 -0.1616 28 1 -0.4851 -0.8394 0.0298 29 1 -0.4570 -2.5189 -1.4186 30 1 0.4577 -1.1069 -2.0077 31 1 0.2915 -2.9574 -3.7106 32 1 1.9705 -2.5605 -3.2706 33 1 0.3224 -4.8384 -2.0815 34 1 1.5933 -5.0209 -3.3141 35 1 1.8636 -6.5190 -1.0857 36 1 2.0703 -8.3402 -0.7104 37 1 2.5568 -10.6672 0.0069 38 1 4.7070 -11.1717 1.0911 39 1 6.4075 -6.2249 0.0465 40 1 7.4627 -8.3516 2.0957 41 1 8.4036 -6.8983 1.4594 42 1 6.6421 -5.3408 2.4124 43 1 5.7007 -6.7934 3.0484 44 1 2.6260 -3.5967 0.5825 45 1 0.9583 -4.1439 0.2720 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007781390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:43 Heat of formation + Delta-G solvation = 25.624960 kcal Electronic energy + Delta-G solvation = -26400.294319 eV Core-core repulsion = 22804.090010 eV Total energy + Delta-G solvation = -3596.204309 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.93387 -40.47148 -39.03286 -37.85725 -36.15802 -34.51176 -33.46067 -32.33132 -32.19597 -30.26285 -27.08352 -25.91171 -25.44820 -24.03884 -23.65996 -23.18977 -22.00259 -21.54625 -21.08599 -19.40342 -18.77560 -17.99213 -17.50719 -16.67699 -16.52236 -16.28359 -16.12089 -15.87863 -15.61159 -15.48194 -15.33065 -15.03328 -14.54875 -14.50325 -14.10674 -14.00029 -13.66064 -13.56329 -13.04095 -12.92381 -12.63700 -12.44423 -12.41369 -11.95732 -11.90220 -11.88365 -11.77213 -11.68094 -11.45866 -11.30013 -10.97094 -10.95397 -10.60462 -10.36396 -10.18437 -9.87404 -8.94927 -8.39143 -5.41204 -0.39190 0.15452 1.54978 1.61510 1.80336 1.82306 1.98998 2.61336 2.65250 3.00082 3.12528 3.15281 3.46172 3.60010 3.66855 3.78367 3.84005 3.97326 3.99994 4.07807 4.12708 4.15706 4.21394 4.31279 4.39709 4.49061 4.65221 4.67057 4.70845 4.71695 4.88778 4.93283 4.98849 5.00483 5.02168 5.03022 5.12998 5.17506 5.22067 5.27094 5.37496 5.50267 5.60885 5.81315 6.34022 6.47427 6.88184 7.00543 7.17824 7.73743 8.15560 8.90996 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016962 B = 0.003494 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.387158 B = 8011.266868 C = 9200.633535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.063 4.063 3 Si 1.110 2.890 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.370 4.370 8 H 0.035 0.965 9 N -0.613 5.613 10 C 0.151 3.849 11 C -0.125 4.125 12 C -0.104 4.104 13 C 0.145 3.855 14 H 0.057 0.943 15 N -0.702 5.702 16 C 0.554 3.446 17 O -0.562 6.562 18 C -0.200 4.200 19 C -0.038 4.038 20 C -0.171 4.171 21 C 0.121 3.879 22 N -0.505 5.505 23 C 0.198 3.802 24 C -0.126 4.126 25 C -0.146 4.146 26 C -0.162 4.162 27 C 0.148 3.852 28 H 0.255 0.745 29 H 0.014 0.986 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.413 0.587 36 H 0.168 0.832 37 H 0.185 0.815 38 H 0.196 0.804 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.024 0.976 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.824 -24.171 -3.416 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.261 4.261 3 Si 0.934 3.066 4 H -0.210 1.210 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.499 4.499 8 H 0.052 0.948 9 N -0.338 5.338 10 C 0.026 3.974 11 C -0.164 4.164 12 C -0.142 4.142 13 C 0.038 3.962 14 H 0.076 0.924 15 N -0.355 5.355 16 C 0.342 3.658 17 O -0.442 6.442 18 C -0.206 4.206 19 C -0.064 4.064 20 C -0.191 4.191 21 C -0.036 4.036 22 N -0.214 5.214 23 C 0.060 3.940 24 C -0.144 4.144 25 C -0.183 4.183 26 C -0.199 4.199 27 C 0.021 3.979 28 H 0.065 0.935 29 H 0.032 0.968 30 H 0.061 0.939 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.251 0.749 36 H 0.186 0.814 37 H 0.202 0.798 38 H 0.213 0.787 39 H 0.134 0.866 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.111 0.889 43 H 0.105 0.895 44 H 0.043 0.957 45 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 6.042 -22.127 -2.913 23.122 hybrid contribution -0.944 -1.180 -0.029 1.511 sum 5.098 -23.307 -2.942 24.039 Atomic orbital electron populations 1.70926 1.07334 1.29258 1.49193 1.27095 0.96376 1.04424 0.98192 0.82931 0.74105 0.72323 0.77262 1.20969 1.20624 1.20657 1.20048 1.00744 0.91449 1.37707 0.94751 1.44249 1.52988 1.00901 1.35682 1.20935 0.90736 0.98472 0.87250 1.21928 1.01427 0.95171 0.97914 1.21626 0.98057 0.97197 0.97345 1.21141 0.98880 0.80661 0.95481 0.92444 1.45751 1.16131 1.10815 1.62789 1.18488 0.82199 0.88074 0.77064 1.90764 1.44934 1.52992 1.55471 1.20676 0.98213 0.94105 1.07573 1.22162 0.97992 0.92425 0.93818 1.22549 0.99443 0.97456 0.99610 1.23712 0.89058 0.99303 0.91535 1.67519 1.34256 1.00252 1.19412 1.20506 0.91538 0.91384 0.90546 1.21059 0.97652 0.99024 0.96698 1.23019 0.93075 1.00529 1.01628 1.22825 1.03140 0.99797 0.94176 1.21092 0.96248 0.85714 0.94817 0.93514 0.96765 0.93873 0.89019 0.93252 0.90148 0.88969 0.74877 0.81414 0.79808 0.78717 0.86585 0.87240 0.87478 0.88938 0.89550 0.95750 0.96238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 12.60 21.65 0.27 -56.71 16 2 C -0.06 -3.70 4.51 84.86 0.38 -3.31 16 3 Si 1.11 52.88 30.02 68.60 2.06 54.94 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 7 C -0.37 -22.11 9.43 84.03 0.79 -21.32 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 9 N -0.61 -32.08 2.85 -699.91 -2.00 -34.07 16 10 C 0.15 6.99 4.81 86.36 0.42 7.40 16 11 C -0.12 -4.28 6.08 30.67 0.19 -4.09 16 12 C -0.10 -2.91 5.36 30.62 0.16 -2.74 16 13 C 0.14 5.05 2.59 44.92 0.12 5.17 16 14 H 0.06 2.40 7.58 -2.38 -0.02 2.38 16 15 N -0.70 -19.02 5.03 -445.73 -2.24 -21.27 16 16 C 0.55 17.46 7.72 86.79 0.67 18.13 16 17 O -0.56 -22.77 13.12 -3.88 -0.05 -22.82 16 18 C -0.20 -5.01 5.89 -20.00 -0.12 -5.13 16 19 C -0.04 -0.58 9.64 22.73 0.22 -0.36 16 20 C -0.17 -1.84 10.10 22.33 0.23 -1.62 16 21 C 0.12 1.71 11.17 84.71 0.95 2.66 16 22 N -0.51 -11.37 9.32 -182.85 -1.70 -13.08 16 23 C 0.20 5.33 6.49 42.88 0.28 5.60 16 24 C -0.13 -3.69 4.47 -11.54 -0.05 -3.74 16 25 C -0.15 -3.46 10.03 30.62 0.31 -3.15 16 26 C -0.16 -4.50 10.24 30.62 0.31 -4.19 16 27 C 0.15 6.66 6.06 86.22 0.52 7.18 16 28 H 0.26 15.91 7.05 -92.71 -0.65 15.26 16 29 H 0.01 0.66 7.97 -2.39 -0.02 0.64 16 30 H 0.04 2.27 6.43 -2.39 -0.02 2.25 16 31 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.41 7.51 6.72 -92.71 -0.62 6.89 16 36 H 0.17 1.43 6.53 -2.91 -0.02 1.41 16 37 H 0.18 0.42 8.06 -2.91 -0.02 0.40 16 38 H 0.20 1.23 8.06 -2.91 -0.02 1.21 16 39 H 0.12 3.97 6.33 -2.39 -0.02 3.95 16 40 H 0.11 2.46 7.57 -2.38 -0.02 2.44 16 41 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.02 1.23 7.93 -2.38 -0.02 1.21 16 45 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -78.96 362.19 2.20 -76.75 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.49 Total: 19.78 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.37 Total: -3.52 kcal Atomic # 7 Polarization: -119.46 SS G_CDS: -5.67 Total: -125.13 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 14 Polarization: 52.88 SS G_CDS: 2.06 Total: 54.94 kcal Total: -78.96 2.20 -76.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007781390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.378 kcal (2) G-P(sol) polarization free energy of solvation -78.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds