Wall clock time and date at job start Tue Mar 31 2020 11:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48501 * 109.47364 * 274.89847 * 3 2 1 5 5 H 1.48501 * 109.47290 * 34.89753 * 3 2 1 6 6 H 1.48500 * 109.47120 * 154.89703 * 3 2 1 7 7 C 1.38813 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00018 * 339.73245 * 7 2 1 9 9 N 1.36932 * 119.99956 * 159.73706 * 7 2 1 10 10 C 1.46928 * 120.62743 * 152.77043 * 9 7 2 11 11 C 1.53202 * 108.77370 * 126.43225 * 10 9 7 12 12 C 1.53041 * 109.31396 * 54.63375 * 11 10 9 13 13 C 1.53041 * 109.53871 * 298.63651 * 12 11 10 14 14 H 1.09001 * 109.49296 * 301.38478 * 13 12 11 15 15 N 1.46493 * 109.50086 * 181.31571 * 13 12 11 16 16 C 1.34783 * 120.00225 * 155.06180 * 15 13 12 17 17 O 1.21283 * 119.99816 * 0.02562 * 16 15 13 18 18 C 1.50696 * 120.00182 * 180.02562 * 16 15 13 19 19 H 1.09006 * 110.71954 * 300.70119 * 18 16 15 20 20 C 1.54411 * 110.81344 * 177.32423 * 18 16 15 21 21 C 1.51573 * 104.89729 * 215.48932 * 20 18 16 22 22 C 1.38630 * 131.46649 * 196.97726 * 21 20 18 23 23 C 1.38212 * 119.09255 * 180.02562 * 22 21 20 24 24 N 1.31888 * 120.71544 * 0.06419 * 23 22 21 25 25 C 1.31839 * 121.78354 * 359.97438 * 24 23 22 26 26 C 1.38335 * 120.75687 * 359.97438 * 25 24 23 27 27 C 1.51180 * 131.26958 * 179.97438 * 26 25 24 28 28 C 1.46933 * 120.60620 * 332.78879 * 9 7 2 29 29 H 0.97005 * 119.99978 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58950 * 6.64349 * 10 9 7 31 31 H 1.08995 * 109.58752 * 246.21386 * 10 9 7 32 32 H 1.08998 * 109.49726 * 294.67809 * 11 10 9 33 33 H 1.09004 * 109.49332 * 174.58191 * 11 10 9 34 34 H 1.08994 * 109.46200 * 178.61379 * 12 11 10 35 35 H 1.08999 * 109.44857 * 58.64680 * 12 11 10 36 36 H 0.97001 * 119.99898 * 335.06412 * 15 13 12 37 37 H 1.08997 * 110.30537 * 334.34170 * 20 18 16 38 38 H 1.09003 * 110.30702 * 96.49992 * 20 18 16 39 39 H 1.07994 * 120.45521 * 0.04133 * 22 21 20 40 40 H 1.08002 * 119.64139 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.61871 * 179.97438 * 25 24 23 42 42 H 1.09002 * 110.29782 * 44.03634 * 27 26 25 43 43 H 1.08995 * 110.38617 * 281.93793 * 27 26 25 44 44 H 1.08995 * 109.55818 * 113.76658 * 28 9 7 45 45 H 1.08998 * 109.61447 * 353.34214 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3942 2.1062 -1.3949 5 1 1.5033 2.6206 0.8010 6 1 3.5957 1.4124 0.5940 7 6 2.0102 -1.2022 -0.0005 8 1 1.5203 -2.1087 0.3231 9 7 3.3160 -1.2387 -0.4113 10 6 4.2334 -2.2656 0.1011 11 6 4.8805 -2.9855 -1.0864 12 6 5.5408 -1.9545 -2.0046 13 6 4.4781 -0.9936 -2.5429 14 1 3.7187 -1.5576 -3.0845 15 7 5.1061 -0.0264 -3.4464 16 6 4.3738 0.5737 -4.4057 17 8 3.1948 0.3133 -4.5206 18 6 5.0199 1.5682 -5.3354 19 1 5.4433 2.4017 -4.7748 20 6 4.0089 2.0724 -6.3880 21 6 4.8236 2.2602 -7.6523 22 6 4.5608 2.9633 -8.8178 23 6 5.5018 2.9622 -9.8300 24 7 6.6355 2.3019 -9.6951 25 6 6.9175 1.6225 -8.6010 26 6 6.0243 1.5788 -7.5455 27 6 6.0996 0.8868 -6.2035 28 6 3.8258 -0.2512 -1.3724 29 1 -0.4850 0.8401 0.0004 30 1 3.6781 -2.9833 0.7050 31 1 5.0065 -1.7948 0.7083 32 1 4.1170 -3.5308 -1.6412 33 1 5.6342 -3.6835 -0.7218 34 1 6.0231 -2.4661 -2.8374 35 1 6.2867 -1.3928 -1.4424 36 1 6.0489 0.1821 -3.3543 37 1 3.2269 1.3300 -6.5473 38 1 3.5731 3.0198 -6.0706 39 1 3.6335 3.5048 -8.9331 40 1 5.3064 3.5073 -10.7416 41 1 7.8565 1.0939 -8.5280 42 1 7.0856 1.0272 -5.7604 43 1 5.8821 -0.1757 -6.3115 44 1 4.5652 0.3843 -0.8852 45 1 3.0019 0.3599 -1.7409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008554238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:09 Heat of formation + Delta-G solvation = 19.255882 kcal Electronic energy + Delta-G solvation = -26338.154797 eV Core-core repulsion = 22741.674304 eV Total energy + Delta-G solvation = -3596.480493 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14333 -39.70377 -37.83719 -36.32410 -34.37170 -32.75986 -32.17517 -30.75767 -30.56026 -29.04908 -27.90330 -25.31367 -24.59953 -22.87727 -22.18587 -21.98274 -21.33583 -20.11784 -19.37243 -17.43688 -16.92577 -16.85633 -16.41786 -15.89461 -15.66459 -15.13936 -14.81445 -14.51787 -14.18453 -13.92046 -13.86031 -13.70116 -13.34949 -13.21392 -12.98848 -12.83020 -12.57658 -12.30465 -12.16785 -11.79066 -11.63314 -11.59526 -11.52399 -11.12157 -10.78610 -10.63214 -10.26208 -10.21306 -9.83800 -9.78271 -9.65596 -9.56941 -9.44566 -9.15988 -8.91583 -8.52991 -6.98005 -5.93232 -3.29832 0.84002 1.00437 2.74392 3.22148 3.36387 3.46919 3.49800 3.51992 3.94403 4.10483 4.27249 4.55079 4.58282 4.66863 4.69727 4.80958 4.99122 5.06357 5.15978 5.18238 5.21511 5.23293 5.39874 5.44393 5.46942 5.48031 5.56925 5.67015 5.77738 5.80176 5.90929 5.92610 6.00197 6.10358 6.17656 6.23489 6.40671 6.42728 6.52429 6.60321 6.61584 6.76467 6.90935 7.65993 7.70286 7.96489 8.34327 8.39587 8.94052 9.73271 10.08773 11.22626 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.003433 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.361496 B = 8154.339497 C = 9176.924254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.027 3.973 3 Si 0.881 3.119 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.271 1.271 7 C -0.264 4.264 8 H 0.087 0.913 9 N -0.602 5.602 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.116 4.116 13 C 0.124 3.876 14 H 0.091 0.909 15 N -0.723 5.723 16 C 0.516 3.484 17 O -0.523 6.523 18 C -0.112 4.112 19 H 0.109 0.891 20 C -0.072 4.072 21 C -0.046 4.046 22 C -0.160 4.160 23 C 0.095 3.905 24 N -0.487 5.487 25 C 0.113 3.887 26 C -0.150 4.150 27 C -0.065 4.065 28 C 0.121 3.879 29 H 0.263 0.737 30 H 0.065 0.935 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.395 0.605 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.024 0.976 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.453 3.123 -14.361 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.172 4.172 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.231 1.231 6 H -0.196 1.196 7 C -0.392 4.392 8 H 0.105 0.895 9 N -0.325 5.325 10 C 0.019 3.981 11 C -0.172 4.172 12 C -0.154 4.154 13 C 0.019 3.981 14 H 0.109 0.891 15 N -0.374 5.374 16 C 0.301 3.699 17 O -0.398 6.398 18 C -0.133 4.133 19 H 0.127 0.873 20 C -0.110 4.110 21 C -0.054 4.054 22 C -0.179 4.179 23 C -0.061 4.061 24 N -0.195 5.195 25 C -0.044 4.044 26 C -0.152 4.152 27 C -0.103 4.103 28 C -0.006 4.006 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.228 0.772 37 H 0.126 0.874 38 H 0.106 0.894 39 H 0.153 0.847 40 H 0.175 0.825 41 H 0.171 0.829 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.042 0.958 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.002 3.018 -15.087 22.199 hybrid contribution 0.240 1.216 0.694 1.420 sum 16.242 4.234 -14.394 22.111 Atomic orbital electron populations 1.69830 1.05717 1.26549 1.52618 1.25258 0.95205 0.97569 0.99157 0.86950 0.80029 0.84965 0.76906 1.21572 1.23141 1.19609 1.18896 0.84798 0.94774 1.40704 0.89548 1.44287 1.08683 1.33063 1.46506 1.20987 0.92487 0.91321 0.93265 1.22006 0.99606 0.97348 0.98286 1.21674 0.97390 0.97299 0.99014 1.21789 0.95342 0.89859 0.91119 0.89051 1.46114 1.13039 1.44717 1.33531 1.20201 0.87110 0.81595 0.81010 1.90782 1.15419 1.62532 1.71073 1.22045 0.96870 0.98382 0.96012 0.87336 1.21088 0.97358 1.03421 0.89083 1.21054 0.95045 0.93950 0.95378 1.21675 1.01510 1.01159 0.93593 1.22707 0.89127 0.95991 0.98296 1.67727 1.20118 1.07868 1.23788 1.22213 0.98658 0.95743 0.87818 1.21482 0.96122 0.99975 0.97617 1.20899 0.99059 0.99832 0.90463 1.21684 0.97589 0.92342 0.88976 0.92749 0.91626 0.95900 0.91644 0.92126 0.92445 0.92108 0.77189 0.87373 0.89448 0.84718 0.82530 0.82897 0.89444 0.89221 0.95796 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.54 13.97 55.49 0.78 -27.76 16 2 C 0.03 0.82 5.24 -17.43 -0.09 0.73 16 3 Si 0.88 23.12 24.34 -169.99 -4.14 18.98 16 4 H -0.29 -7.56 6.70 56.52 0.38 -7.18 16 5 H -0.30 -8.03 7.11 56.52 0.40 -7.62 16 6 H -0.27 -6.84 6.45 56.52 0.36 -6.48 16 7 C -0.26 -7.51 10.04 -15.06 -0.15 -7.66 16 8 H 0.09 2.60 8.06 -52.48 -0.42 2.18 16 9 N -0.60 -14.36 2.77 -172.31 -0.48 -14.84 16 10 C 0.15 2.76 6.52 -3.70 -0.02 2.73 16 11 C -0.13 -2.02 6.08 -26.61 -0.16 -2.18 16 12 C -0.12 -1.61 5.35 -26.69 -0.14 -1.75 16 13 C 0.12 2.17 2.60 -67.81 -0.18 2.00 16 14 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 15 N -0.72 -10.08 5.06 -53.69 -0.27 -10.35 16 16 C 0.52 7.90 7.02 -10.98 -0.08 7.82 16 17 O -0.52 -10.73 15.19 5.55 0.08 -10.65 16 18 C -0.11 -1.22 3.45 -90.31 -0.31 -1.53 16 19 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 20 C -0.07 -0.83 6.12 -26.71 -0.16 -1.00 16 21 C -0.05 -0.49 6.22 -103.96 -0.65 -1.14 16 22 C -0.16 -1.50 10.12 -39.45 -0.40 -1.90 16 23 C 0.10 0.89 11.19 -17.54 -0.20 0.70 16 24 N -0.49 -5.31 10.36 -13.22 -0.14 -5.45 16 25 C 0.11 1.10 11.19 -17.51 -0.20 0.90 16 26 C -0.15 -1.48 6.19 -104.27 -0.64 -2.13 16 27 C -0.06 -0.56 6.29 -26.92 -0.17 -0.73 16 28 C 0.12 2.67 3.77 -3.70 -0.01 2.66 16 29 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 30 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 31 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.39 3.94 8.60 -40.82 -0.35 3.59 16 37 H 0.11 1.46 7.03 -51.93 -0.36 1.10 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.82 7.88 -51.93 -0.41 0.41 16 44 H 0.02 0.52 6.98 -51.93 -0.36 0.16 16 45 H 0.08 2.01 4.50 -51.93 -0.23 1.78 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -35.61 355.51 -9.17 -44.78 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.79 Total: 2.42 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.57 Total: -2.49 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.11 Total: -58.39 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -4.14 Total: 18.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.61 -9.17 -44.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008554238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.032 kcal (2) G-P(sol) polarization free energy of solvation -35.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds