Wall clock time and date at job start Tue Mar 31 2020 11:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48501 * 109.47364 * 274.89847 * 3 2 1 5 5 H 1.48501 * 109.47290 * 34.89753 * 3 2 1 6 6 H 1.48500 * 109.47120 * 154.89703 * 3 2 1 7 7 C 1.38813 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00018 * 339.73245 * 7 2 1 9 9 N 1.36932 * 119.99956 * 159.73706 * 7 2 1 10 10 C 1.46928 * 120.62743 * 152.77043 * 9 7 2 11 11 C 1.53202 * 108.77370 * 126.43225 * 10 9 7 12 12 C 1.53041 * 109.31396 * 54.63375 * 11 10 9 13 13 C 1.53041 * 109.53871 * 298.63651 * 12 11 10 14 14 H 1.09001 * 109.49296 * 301.38478 * 13 12 11 15 15 N 1.46493 * 109.50086 * 181.31571 * 13 12 11 16 16 C 1.34783 * 120.00225 * 155.06180 * 15 13 12 17 17 O 1.21283 * 119.99816 * 0.02562 * 16 15 13 18 18 C 1.50696 * 120.00182 * 180.02562 * 16 15 13 19 19 H 1.09006 * 110.71954 * 300.70119 * 18 16 15 20 20 C 1.54411 * 110.81344 * 177.32423 * 18 16 15 21 21 C 1.51573 * 104.89729 * 215.48932 * 20 18 16 22 22 C 1.38630 * 131.46649 * 196.97726 * 21 20 18 23 23 C 1.38212 * 119.09255 * 180.02562 * 22 21 20 24 24 N 1.31888 * 120.71544 * 0.06419 * 23 22 21 25 25 C 1.31839 * 121.78354 * 359.97438 * 24 23 22 26 26 C 1.38335 * 120.75687 * 359.97438 * 25 24 23 27 27 C 1.51180 * 131.26958 * 179.97438 * 26 25 24 28 28 C 1.46933 * 120.60620 * 332.78879 * 9 7 2 29 29 H 0.97005 * 119.99978 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58950 * 6.64349 * 10 9 7 31 31 H 1.08995 * 109.58752 * 246.21386 * 10 9 7 32 32 H 1.08998 * 109.49726 * 294.67809 * 11 10 9 33 33 H 1.09004 * 109.49332 * 174.58191 * 11 10 9 34 34 H 1.08994 * 109.46200 * 178.61379 * 12 11 10 35 35 H 1.08999 * 109.44857 * 58.64680 * 12 11 10 36 36 H 0.97001 * 119.99898 * 335.06412 * 15 13 12 37 37 H 1.08997 * 110.30537 * 334.34170 * 20 18 16 38 38 H 1.09003 * 110.30702 * 96.49992 * 20 18 16 39 39 H 1.07994 * 120.45521 * 0.04133 * 22 21 20 40 40 H 1.08002 * 119.64139 * 180.02562 * 23 22 21 41 41 H 1.08000 * 119.61871 * 179.97438 * 25 24 23 42 42 H 1.09002 * 110.29782 * 44.03634 * 27 26 25 43 43 H 1.08995 * 110.38617 * 281.93793 * 27 26 25 44 44 H 1.08995 * 109.55818 * 113.76658 * 28 9 7 45 45 H 1.08998 * 109.61447 * 353.34214 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3942 2.1062 -1.3949 5 1 1.5033 2.6206 0.8010 6 1 3.5957 1.4124 0.5940 7 6 2.0102 -1.2022 -0.0005 8 1 1.5203 -2.1087 0.3231 9 7 3.3160 -1.2387 -0.4113 10 6 4.2334 -2.2656 0.1011 11 6 4.8805 -2.9855 -1.0864 12 6 5.5408 -1.9545 -2.0046 13 6 4.4781 -0.9936 -2.5429 14 1 3.7187 -1.5576 -3.0845 15 7 5.1061 -0.0264 -3.4464 16 6 4.3738 0.5737 -4.4057 17 8 3.1948 0.3133 -4.5206 18 6 5.0199 1.5682 -5.3354 19 1 5.4433 2.4017 -4.7748 20 6 4.0089 2.0724 -6.3880 21 6 4.8236 2.2602 -7.6523 22 6 4.5608 2.9633 -8.8178 23 6 5.5018 2.9622 -9.8300 24 7 6.6355 2.3019 -9.6951 25 6 6.9175 1.6225 -8.6010 26 6 6.0243 1.5788 -7.5455 27 6 6.0996 0.8868 -6.2035 28 6 3.8258 -0.2512 -1.3724 29 1 -0.4850 0.8401 0.0004 30 1 3.6781 -2.9833 0.7050 31 1 5.0065 -1.7948 0.7083 32 1 4.1170 -3.5308 -1.6412 33 1 5.6342 -3.6835 -0.7218 34 1 6.0231 -2.4661 -2.8374 35 1 6.2867 -1.3928 -1.4424 36 1 6.0489 0.1821 -3.3543 37 1 3.2269 1.3300 -6.5473 38 1 3.5731 3.0198 -6.0706 39 1 3.6335 3.5048 -8.9331 40 1 5.3064 3.5073 -10.7416 41 1 7.8565 1.0939 -8.5280 42 1 7.0856 1.0272 -5.7604 43 1 5.8821 -0.1757 -6.3115 44 1 4.5652 0.3843 -0.8852 45 1 3.0019 0.3599 -1.7409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008554238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:08 Heat of formation + Delta-G solvation = -6.340311 kcal Electronic energy + Delta-G solvation = -26339.264731 eV Core-core repulsion = 22741.674304 eV Total energy + Delta-G solvation = -3597.590427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98721 -40.86449 -39.26954 -37.26531 -35.92911 -34.49530 -32.93047 -32.59213 -31.59339 -30.28842 -28.69126 -27.21420 -25.59756 -24.31762 -23.48895 -22.71220 -22.50388 -21.45326 -20.67494 -18.86893 -18.46613 -17.76828 -17.56426 -17.05235 -16.98193 -16.25635 -15.98753 -15.77520 -15.61120 -15.44505 -14.97539 -14.80362 -14.53119 -14.49929 -14.09771 -14.00718 -13.95810 -13.86355 -13.46443 -13.26569 -12.69120 -12.63150 -12.51843 -12.44772 -12.33203 -12.29217 -11.79910 -11.69756 -11.64051 -11.35707 -10.91621 -10.82160 -10.50914 -10.39910 -10.16412 -9.85472 -8.94644 -8.22254 -5.53186 0.14710 0.24864 1.23823 1.30023 1.40181 1.55751 2.06936 2.36784 2.80328 3.01422 3.15014 3.27501 3.40416 3.61843 3.77934 3.82482 3.88450 3.96205 4.05699 4.08680 4.16109 4.25788 4.34639 4.43036 4.46097 4.50542 4.64153 4.67419 4.75650 4.80202 4.86833 4.89727 4.94736 5.01335 5.02658 5.06417 5.11256 5.16191 5.23991 5.37373 5.43515 5.56274 5.74168 5.83174 6.07880 6.55990 6.87813 6.99991 7.27595 7.58855 7.97324 8.97742 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.018884 B = 0.003433 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.361496 B = 8154.339497 C = 9176.924254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.038 4.038 3 Si 0.949 3.051 4 H -0.294 1.294 5 H -0.308 1.308 6 H -0.248 1.248 7 C -0.248 4.248 8 H 0.054 0.946 9 N -0.619 5.619 10 C 0.136 3.864 11 C -0.126 4.126 12 C -0.105 4.105 13 C 0.135 3.865 14 H 0.052 0.948 15 N -0.706 5.706 16 C 0.512 3.488 17 O -0.585 6.585 18 C -0.103 4.103 19 H 0.134 0.866 20 C -0.074 4.074 21 C -0.064 4.064 22 C -0.165 4.165 23 C 0.090 3.910 24 N -0.508 5.508 25 C 0.108 3.892 26 C -0.152 4.152 27 C -0.054 4.054 28 C 0.119 3.881 29 H 0.260 0.740 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.420 0.580 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.149 0.851 40 H 0.182 0.818 41 H 0.179 0.821 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.040 0.960 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.372 3.521 -15.113 26.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.233 4.233 3 Si 0.779 3.221 4 H -0.222 1.222 5 H -0.237 1.237 6 H -0.172 1.172 7 C -0.378 4.378 8 H 0.071 0.929 9 N -0.344 5.344 10 C 0.012 3.988 11 C -0.165 4.165 12 C -0.143 4.143 13 C 0.028 3.972 14 H 0.070 0.930 15 N -0.358 5.358 16 C 0.299 3.701 17 O -0.465 6.465 18 C -0.124 4.124 19 H 0.152 0.848 20 C -0.112 4.112 21 C -0.072 4.072 22 C -0.185 4.185 23 C -0.066 4.066 24 N -0.217 5.217 25 C -0.049 4.049 26 C -0.154 4.154 27 C -0.092 4.092 28 C -0.007 4.007 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.121 0.879 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.258 0.742 37 H 0.097 0.903 38 H 0.105 0.895 39 H 0.167 0.833 40 H 0.199 0.801 41 H 0.196 0.804 42 H 0.144 0.856 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 21.037 3.402 -15.839 26.552 hybrid contribution -1.327 0.988 0.886 1.876 sum 19.711 4.390 -14.952 25.127 Atomic orbital electron populations 1.69973 1.07467 1.27059 1.55860 1.25946 0.95886 1.01175 1.00304 0.85854 0.79516 0.80455 0.76314 1.22202 1.23739 1.17155 1.18889 0.86975 0.93417 1.38533 0.92852 1.44447 1.07816 1.34541 1.47599 1.21269 0.92081 0.90254 0.95188 1.21927 1.00021 0.97868 0.96670 1.21661 0.96273 0.96308 1.00072 1.21360 0.96126 0.90235 0.89476 0.93001 1.45878 1.14093 1.43588 1.32233 1.21003 0.86402 0.81453 0.81212 1.90771 1.18411 1.64562 1.72713 1.22038 0.97092 0.97915 0.95337 0.84772 1.21011 0.97221 1.02609 0.90336 1.21092 0.95488 0.95227 0.95401 1.21912 1.02234 1.01026 0.93282 1.23128 0.88641 0.95763 0.99077 1.67776 1.20829 1.08552 1.24507 1.22616 0.99502 0.95478 0.87288 1.21612 0.95750 0.99795 0.98239 1.20897 0.99832 0.99036 0.89454 1.21664 0.96530 0.92228 0.90308 0.93134 0.92721 0.93631 0.93660 0.87859 0.88982 0.89325 0.74172 0.90324 0.89451 0.83289 0.80145 0.80403 0.85645 0.89550 0.94222 0.94913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.64 13.97 21.65 0.30 -63.33 16 2 C -0.04 -2.38 5.24 84.86 0.44 -1.94 16 3 Si 0.95 49.43 24.34 68.60 1.67 51.10 16 4 H -0.29 -15.43 6.70 99.48 0.67 -14.76 16 5 H -0.31 -16.12 7.11 99.48 0.71 -15.41 16 6 H -0.25 -11.76 6.45 99.48 0.64 -11.12 16 7 C -0.25 -14.68 10.04 84.03 0.84 -13.83 16 8 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 9 N -0.62 -29.46 2.77 -699.06 -1.94 -31.40 16 10 C 0.14 4.90 6.52 86.37 0.56 5.46 16 11 C -0.13 -3.38 6.08 30.68 0.19 -3.20 16 12 C -0.11 -2.44 5.35 30.62 0.16 -2.27 16 13 C 0.13 4.48 2.60 45.07 0.12 4.59 16 14 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 15 N -0.71 -17.73 5.06 -442.16 -2.24 -19.97 16 16 C 0.51 15.22 7.02 87.65 0.62 15.84 16 17 O -0.59 -25.03 15.19 -3.04 -0.05 -25.08 16 18 C -0.10 -2.04 3.45 -10.59 -0.04 -2.07 16 19 H 0.13 2.02 8.14 -2.38 -0.02 2.00 16 20 C -0.07 -1.71 6.12 30.61 0.19 -1.52 16 21 C -0.06 -1.29 6.22 -19.44 -0.12 -1.41 16 22 C -0.16 -2.91 10.12 22.36 0.23 -2.68 16 23 C 0.09 1.52 11.19 84.68 0.95 2.47 16 24 N -0.51 -9.99 10.36 -195.74 -2.03 -12.02 16 25 C 0.11 1.80 11.19 84.71 0.95 2.75 16 26 C -0.15 -2.63 6.19 -19.63 -0.12 -2.75 16 27 C -0.05 -0.76 6.29 30.47 0.19 -0.57 16 28 C 0.12 5.14 3.77 86.36 0.33 5.47 16 29 H 0.26 16.47 8.31 -92.70 -0.77 15.70 16 30 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.42 6.30 8.60 -92.71 -0.80 5.51 16 37 H 0.08 2.28 7.03 -2.39 -0.02 2.26 16 38 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 40 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 41 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 1.31 7.88 -2.39 -0.02 1.29 16 44 H 0.04 1.59 6.98 -2.39 -0.02 1.58 16 45 H 0.03 1.72 4.50 -2.39 -0.01 1.71 16 Total: -1.00 -84.76 355.51 1.30 -83.46 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.10 Total: 12.91 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.48 Total: 4.33 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -5.90 Total: -126.73 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.05 Total: -25.08 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 1.67 Total: 51.10 kcal Total: -84.76 1.30 -83.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008554238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.120 kcal (2) G-P(sol) polarization free energy of solvation -84.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds