Wall clock time and date at job start Tue Mar 31 2020 10:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99852 * 2 1 4 4 H 1.48493 * 109.47179 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47343 * 240.00188 * 3 2 1 6 6 H 1.48505 * 109.46857 * 120.00511 * 3 2 1 7 7 C 1.38814 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00058 * 204.22080 * 7 2 1 9 9 N 1.36943 * 119.99794 * 24.22367 * 7 2 1 10 10 C 1.46930 * 120.63047 * 29.24542 * 9 7 2 11 11 C 1.53187 * 108.77447 * 126.36972 * 10 9 7 12 12 C 1.53044 * 109.31450 * 54.63251 * 11 10 9 13 13 C 1.53042 * 109.53662 * 298.63496 * 12 11 10 14 14 H 1.08994 * 109.49679 * 301.40966 * 13 12 11 15 15 N 1.46499 * 109.49455 * 181.31498 * 13 12 11 16 16 C 1.34778 * 119.99533 * 154.99917 * 15 13 12 17 17 O 1.21507 * 120.00732 * 359.97438 * 16 15 13 18 18 C 1.48179 * 119.99498 * 180.02562 * 16 15 13 19 19 C 1.39307 * 119.71866 * 179.72848 * 18 16 15 20 20 C 1.38594 * 119.05298 * 179.75171 * 19 18 16 21 21 C 1.38621 * 118.49070 * 0.51408 * 20 19 18 22 22 C 1.50703 * 120.32441 * 179.75264 * 21 20 19 23 23 C 1.52993 * 117.49918 * 188.72199 * 22 21 20 24 24 C 1.52996 * 117.50190 * 120.06210 * 22 21 20 25 25 C 1.38563 * 119.35297 * 359.72262 * 21 20 19 26 26 N 1.31516 * 120.89931 * 0.02969 * 25 21 20 27 27 C 1.46926 * 120.62610 * 208.96279 * 9 7 2 28 28 H 0.96998 * 119.99374 * 185.77013 * 1 2 3 29 29 H 1.09001 * 109.58218 * 246.15690 * 10 9 7 30 30 H 1.08998 * 109.58258 * 6.43678 * 10 9 7 31 31 H 1.09001 * 109.49858 * 174.58638 * 11 10 9 32 32 H 1.09006 * 109.49530 * 294.67981 * 11 10 9 33 33 H 1.09002 * 109.45884 * 58.65430 * 12 11 10 34 34 H 1.08992 * 109.45705 * 178.62592 * 12 11 10 35 35 H 0.97000 * 120.00026 * 335.00171 * 15 13 12 36 36 H 1.07994 * 120.47425 * 359.97438 * 19 18 16 37 37 H 1.08008 * 120.74996 * 180.24299 * 20 19 18 38 38 H 1.09003 * 115.54942 * 334.39205 * 22 21 20 39 39 H 1.09004 * 117.50153 * 0.02562 * 23 22 21 40 40 H 1.09001 * 117.50302 * 145.01984 * 23 22 21 41 41 H 1.09002 * 117.49973 * 214.98306 * 24 22 21 42 42 H 1.09000 * 117.49898 * 359.97438 * 24 22 21 43 43 H 1.08001 * 119.54693 * 180.02562 * 25 21 20 44 44 H 1.08991 * 109.58972 * 353.42219 * 27 9 7 45 45 H 1.09010 * 109.58337 * 113.84630 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6965 -1.2125 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0190 -1.2434 0.3831 9 7 1.4161 -2.3357 -0.4877 10 6 0.3974 -2.2524 -1.5432 11 6 0.8093 -3.1691 -2.6993 12 6 1.0461 -4.5833 -2.1644 13 6 2.1818 -4.5591 -1.1389 14 1 3.0862 -4.1702 -1.6068 15 7 2.4287 -5.9181 -0.6507 16 6 3.6400 -6.2483 -0.1606 17 8 4.5275 -5.4191 -0.1242 18 6 3.8899 -7.6231 0.3327 19 6 5.1458 -7.9597 0.8328 20 6 5.3628 -9.2480 1.2954 21 6 4.3191 -10.1581 1.2317 22 6 4.5112 -11.5715 1.7180 23 6 3.3920 -12.5749 1.4331 24 6 3.6106 -12.0555 2.8562 25 6 3.0972 -9.7553 0.7170 26 7 2.9171 -8.5247 0.2894 27 6 1.7895 -3.6586 0.0310 28 1 -0.4849 -0.8358 0.0845 29 1 -0.5660 -2.5739 -1.1474 30 1 0.3221 -1.2245 -1.8980 31 1 0.0162 -3.1908 -3.4467 32 1 1.7267 -2.7932 -3.1525 33 1 0.1357 -4.9490 -1.6894 34 1 1.3156 -5.2430 -2.9891 35 1 1.7204 -6.5802 -0.6801 36 1 5.9379 -7.2263 0.8630 37 1 6.3246 -9.5375 1.6924 38 1 5.5364 -11.9412 1.6954 39 1 2.5168 -12.2129 0.8934 40 1 3.6806 -13.6048 1.2234 41 1 4.0432 -12.7439 3.5823 42 1 2.8795 -11.3515 3.2536 43 1 2.2818 -10.4616 0.6663 44 1 2.6341 -3.5588 0.7127 45 1 0.9419 -4.0972 0.5578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009380134.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:52 Heat of formation + Delta-G solvation = 40.703467 kcal Electronic energy + Delta-G solvation = -25611.961187 eV Core-core repulsion = 22016.410731 eV Total energy + Delta-G solvation = -3595.550456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93800 -39.38617 -37.70915 -37.17641 -34.52385 -32.97485 -32.34780 -31.29949 -30.36156 -28.67849 -25.39969 -25.05103 -24.22486 -22.78462 -22.51382 -22.04115 -21.15087 -20.35654 -19.46960 -17.96920 -17.40258 -17.27011 -16.15310 -15.52592 -15.27328 -15.12568 -15.04544 -14.45582 -14.16919 -14.07017 -13.77215 -13.54086 -13.41845 -13.21004 -13.06441 -12.66858 -12.29858 -12.19208 -11.97671 -11.96355 -11.49955 -11.16044 -10.92212 -10.73108 -10.66497 -10.34444 -10.23065 -10.07268 -10.03468 -9.97523 -9.94088 -9.58017 -9.28716 -9.14790 -8.84399 -8.26749 -6.83161 -6.01461 -3.19500 0.39539 0.94377 2.67700 3.21423 3.35716 3.55278 3.57960 3.76148 3.77030 3.87885 4.12044 4.31606 4.43315 4.51835 4.56266 4.63777 4.72160 4.95073 5.06570 5.13983 5.23495 5.34809 5.36785 5.42067 5.45647 5.52945 5.60477 5.60946 5.65869 5.76147 5.86392 5.97920 6.08935 6.18015 6.28195 6.42331 6.47252 6.59688 6.62090 6.75041 6.92055 7.09682 7.21458 7.42881 7.79385 8.09175 8.37350 8.63622 9.16392 9.89770 10.32785 11.26722 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.024920 B = 0.002568 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.308711 B =10900.664708 C =11355.163310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.024 4.024 3 Si 1.065 2.935 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.347 4.347 8 H 0.056 0.944 9 N -0.594 5.594 10 C 0.147 3.853 11 C -0.134 4.134 12 C -0.115 4.115 13 C 0.124 3.876 14 H 0.088 0.912 15 N -0.701 5.701 16 C 0.565 3.435 17 O -0.529 6.529 18 C 0.080 3.920 19 C -0.107 4.107 20 C -0.077 4.077 21 C -0.087 4.087 22 C -0.120 4.120 23 C -0.174 4.174 24 C -0.166 4.166 25 C 0.095 3.905 26 N -0.453 5.453 27 C 0.144 3.856 28 H 0.268 0.732 29 H 0.018 0.982 30 H 0.080 0.920 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.405 0.595 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.160 0.840 44 H 0.059 0.941 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.505 -26.063 0.882 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.226 4.226 3 Si 0.895 3.105 4 H -0.211 1.211 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.476 4.476 8 H 0.074 0.926 9 N -0.318 5.318 10 C 0.021 3.979 11 C -0.174 4.174 12 C -0.153 4.153 13 C 0.019 3.981 14 H 0.106 0.894 15 N -0.351 5.351 16 C 0.349 3.651 17 O -0.405 6.405 18 C -0.058 4.058 19 C -0.128 4.128 20 C -0.103 4.103 21 C -0.089 4.089 22 C -0.138 4.138 23 C -0.211 4.211 24 C -0.203 4.203 25 C -0.065 4.065 26 N -0.164 5.164 27 C 0.017 3.983 28 H 0.079 0.921 29 H 0.036 0.964 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.240 0.760 36 H 0.168 0.832 37 H 0.159 0.841 38 H 0.135 0.865 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.177 0.823 44 H 0.078 0.922 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 6.155 -23.442 0.497 24.241 hybrid contribution 0.716 -2.454 0.489 2.603 sum 6.871 -25.896 0.986 26.810 Atomic orbital electron populations 1.70783 1.06551 1.30252 1.48140 1.25876 0.96557 1.01448 0.98699 0.83522 0.74750 0.75935 0.76293 1.21124 1.21992 1.21966 1.20002 0.97127 0.88102 1.42342 0.92597 1.44050 1.46647 1.01092 1.40039 1.21008 0.90558 0.99031 0.87266 1.22059 1.01187 0.94755 0.99351 1.21669 0.97692 0.98371 0.97557 1.21695 0.99234 0.80480 0.96670 0.89416 1.45971 1.12944 1.14130 1.62020 1.17850 0.83203 0.85716 0.78329 1.90819 1.44271 1.49767 1.55596 1.21326 0.90930 0.94221 0.99364 1.22165 0.97795 0.97070 0.95745 1.21419 0.99334 0.92307 0.97255 1.20340 0.94961 0.95064 0.98562 1.20974 0.97490 0.91004 1.04364 1.23106 0.99936 0.98906 0.99146 1.23083 1.02262 1.03393 0.91578 1.22657 0.96210 0.92438 0.95152 1.67582 1.32711 1.02112 1.14001 1.21095 0.97786 0.86364 0.93065 0.92104 0.96410 0.90133 0.92434 0.92034 0.92108 0.92705 0.75963 0.83156 0.84062 0.86454 0.88098 0.88035 0.88082 0.88310 0.82299 0.92227 0.96610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.92 12.45 55.49 0.69 -27.23 16 2 C -0.02 -0.70 4.69 -17.43 -0.08 -0.78 16 3 Si 1.07 26.02 29.98 -169.99 -5.10 20.92 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.35 -10.09 9.48 -15.06 -0.14 -10.24 16 8 H 0.06 1.67 7.94 -52.49 -0.42 1.26 16 9 N -0.59 -15.49 2.84 -172.58 -0.49 -15.98 16 10 C 0.15 3.48 4.70 -3.71 -0.02 3.46 16 11 C -0.13 -2.52 6.08 -26.61 -0.16 -2.68 16 12 C -0.11 -1.92 5.36 -26.69 -0.14 -2.07 16 13 C 0.12 2.36 2.59 -68.03 -0.18 2.19 16 14 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 15 N -0.70 -11.42 5.07 -54.75 -0.28 -11.70 16 16 C 0.57 9.67 7.78 -12.18 -0.09 9.58 16 17 O -0.53 -10.82 15.99 5.36 0.09 -10.74 16 18 C 0.08 1.11 6.75 -83.00 -0.56 0.55 16 19 C -0.11 -1.26 9.63 -39.05 -0.38 -1.64 16 20 C -0.08 -0.69 9.88 -39.31 -0.39 -1.08 16 21 C -0.09 -0.74 5.63 -104.36 -0.59 -1.32 16 22 C -0.12 -0.71 6.06 -91.78 -0.56 -1.26 16 23 C -0.17 -0.83 9.87 -26.70 -0.26 -1.10 16 24 C -0.17 -0.86 10.17 -26.70 -0.27 -1.13 16 25 C 0.10 0.92 10.47 -17.57 -0.18 0.73 16 26 N -0.45 -5.65 9.54 -9.80 -0.09 -5.75 16 27 C 0.14 3.30 6.06 -3.93 -0.02 3.27 16 28 H 0.27 8.21 6.72 -40.82 -0.27 7.94 16 29 H 0.02 0.43 7.85 -51.93 -0.41 0.02 16 30 H 0.08 2.13 6.38 -51.93 -0.33 1.79 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.41 5.74 7.93 -40.82 -0.32 5.41 16 36 H 0.15 1.74 7.64 -52.49 -0.40 1.34 16 37 H 0.14 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.12 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.46 6.20 -51.93 -0.32 0.13 16 40 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.16 1.13 6.04 -52.49 -0.32 0.81 16 44 H 0.06 1.47 7.93 -51.93 -0.41 1.06 16 45 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -33.70 365.94 -10.32 -44.02 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.62 Total: 4.45 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -4.03 Total: -3.51 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: -0.17 Total: -60.66 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.10 Total: 20.92 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.70 -10.32 -44.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009380134.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.721 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds