Wall clock time and date at job start Tue Mar 31 2020 10:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86809 * 119.99816 * 2 1 4 4 H 1.48503 * 109.46795 * 269.99981 * 3 2 1 5 5 H 1.48495 * 109.47170 * 30.00168 * 3 2 1 6 6 H 1.48502 * 109.46931 * 150.00408 * 3 2 1 7 7 C 1.38811 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99840 * 197.84278 * 7 2 1 9 9 N 1.36935 * 120.00102 * 17.84573 * 7 2 1 10 10 C 1.46850 * 120.38257 * 28.90999 * 9 7 2 11 11 C 1.53346 * 108.81152 * 123.07329 * 10 9 7 12 12 C 1.53178 * 108.76696 * 51.31835 * 11 10 9 13 13 C 1.52849 * 117.65925 * 90.01572 * 12 11 10 14 14 C 1.52826 * 117.71381 * 158.87667 * 12 11 10 15 15 H 1.08994 * 117.50279 * 359.85968 * 14 12 11 16 16 N 1.46502 * 117.52239 * 144.90903 * 14 12 11 17 17 C 1.34771 * 119.99952 * 204.97878 * 16 14 12 18 18 O 1.21286 * 120.00050 * 0.02562 * 17 16 14 19 19 C 1.50703 * 120.00077 * 180.02562 * 17 16 14 20 20 C 1.50698 * 109.47015 * 180.02562 * 19 17 16 21 21 C 1.38678 * 120.42067 * 269.72139 * 20 19 17 22 22 C 1.38628 * 118.41708 * 179.78796 * 21 20 19 23 23 C 1.38220 * 119.16419 * 0.50452 * 22 21 20 24 24 N 1.31858 * 120.76476 * 359.73699 * 23 22 21 25 25 C 1.31882 * 121.72576 * 359.97438 * 24 23 22 26 26 C 1.53182 * 115.07657 * 304.54423 * 12 11 10 27 27 C 1.46841 * 120.38291 * 208.88737 * 9 7 2 28 28 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.57994 * 3.27722 * 10 9 7 30 30 H 1.09000 * 109.57924 * 242.87276 * 10 9 7 31 31 H 1.09001 * 109.59203 * 291.52702 * 11 10 9 32 32 H 1.09001 * 109.70483 * 171.17497 * 11 10 9 33 33 H 1.08999 * 117.49865 * 0.24330 * 13 12 11 34 34 H 1.08993 * 117.50259 * 215.18796 * 13 12 11 35 35 H 0.97004 * 120.00226 * 24.98660 * 16 14 12 36 36 H 1.08993 * 109.46901 * 300.00094 * 19 17 16 37 37 H 1.08995 * 109.47167 * 60.00488 * 19 17 16 38 38 H 1.07997 * 120.78877 * 0.02562 * 21 20 19 39 39 H 1.08007 * 120.41504 * 180.22250 * 22 21 20 40 40 H 1.08004 * 119.61921 * 179.75081 * 23 22 21 41 41 H 1.08001 * 119.61984 * 180.02562 * 25 24 23 42 42 H 1.09005 * 109.58946 * 175.23096 * 26 12 11 43 43 H 1.08996 * 109.58980 * 295.66180 * 26 12 11 44 44 H 1.09002 * 109.58000 * 356.71908 * 27 9 7 45 45 H 1.08995 * 109.58017 * 116.98730 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0513 -1.2247 0.2861 9 7 1.3750 -2.3594 -0.3645 10 6 0.2557 -2.3251 -1.3145 11 6 0.5864 -3.2378 -2.5015 12 6 1.0070 -4.6099 -1.9658 13 6 -0.0871 -5.6573 -1.7606 14 6 0.9076 -5.8041 -2.9143 15 1 0.5398 -5.6165 -3.9230 16 7 1.9292 -6.8477 -2.7981 17 6 2.2173 -7.6296 -3.8573 18 8 1.6311 -7.4690 -4.9069 19 6 3.2677 -8.7036 -3.7376 20 6 3.3971 -9.4284 -5.0525 21 6 2.6245 -10.5495 -5.3154 22 6 2.7740 -11.1814 -6.5402 23 6 3.6893 -10.6829 -7.4480 24 7 4.4110 -9.6171 -7.1620 25 6 4.2912 -8.9873 -6.0094 26 6 2.1675 -4.5887 -0.9662 27 6 1.8055 -3.6490 0.1903 28 1 -0.4850 0.8400 0.0004 29 1 0.1081 -1.3047 -1.6683 30 1 -0.6511 -2.6783 -0.8235 31 1 1.4032 -2.8049 -3.0790 32 1 -0.2924 -3.3473 -3.1369 33 1 -1.1093 -5.3730 -2.0105 34 1 0.0188 -6.3368 -0.9150 35 1 2.3982 -6.9761 -1.9587 36 1 4.2238 -8.2493 -3.4779 37 1 2.9779 -9.4102 -2.9599 38 1 1.9202 -10.9192 -4.5849 39 1 2.1860 -12.0550 -6.7801 40 1 3.8147 -11.1719 -8.4028 41 1 4.8993 -8.1171 -5.8109 42 1 2.3363 -5.5943 -0.5808 43 1 3.0695 -4.2287 -1.4610 44 1 2.6778 -3.4999 0.8267 45 1 0.9956 -4.0831 0.7765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016574871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:36 Heat of formation + Delta-G solvation = 42.159453 kcal Electronic energy + Delta-G solvation = -25510.771113 eV Core-core repulsion = 21915.283794 eV Total energy + Delta-G solvation = -3595.487319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.66874 -39.75736 -38.38882 -35.52658 -33.84087 -33.13101 -32.15630 -31.59318 -30.05169 -28.60711 -27.91024 -24.37067 -23.82906 -23.28443 -22.49955 -21.77732 -20.83713 -20.33574 -18.25813 -17.45490 -17.23871 -16.73907 -16.57525 -16.11084 -15.27857 -15.01826 -14.84888 -14.35317 -14.11771 -13.83267 -13.57134 -13.47778 -13.35524 -13.30911 -13.13067 -12.80911 -12.50746 -12.27073 -11.87959 -11.66790 -11.60311 -11.34565 -10.98416 -10.75920 -10.45536 -10.34266 -10.19787 -9.98268 -9.95908 -9.71297 -9.70383 -9.65281 -9.40392 -9.19144 -8.49838 -8.46595 -6.66410 -5.80450 -3.23976 0.83320 1.04292 2.48249 3.01437 3.36979 3.44266 3.44924 3.62260 4.13137 4.14304 4.38215 4.48160 4.49684 4.68422 4.71663 4.73571 4.95204 5.03329 5.08011 5.11183 5.11973 5.37059 5.37573 5.46267 5.50101 5.61415 5.82619 5.83598 5.95483 6.02691 6.04159 6.06379 6.26150 6.40714 6.43478 6.53343 6.58998 6.62117 6.67375 6.80830 6.93750 7.34838 7.42999 7.65517 7.73344 7.78165 8.13588 8.44870 9.20101 9.83626 10.40054 11.27245 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028469 B = 0.002360 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.305223 B =11862.649153 C =12182.064235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.106 4.106 12 C -0.096 4.096 13 C -0.182 4.182 14 C 0.068 3.932 15 H 0.131 0.869 16 N -0.695 5.695 17 C 0.515 3.485 18 O -0.535 6.535 19 C -0.099 4.099 20 C -0.115 4.115 21 C -0.062 4.062 22 C -0.172 4.172 23 C 0.095 3.905 24 N -0.484 5.484 25 C 0.114 3.886 26 C -0.097 4.097 27 C 0.149 3.851 28 H 0.254 0.746 29 H 0.090 0.910 30 H 0.018 0.982 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.401 0.599 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.057 -21.920 -7.200 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.384 4.384 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.145 4.145 12 C -0.097 4.097 13 C -0.221 4.221 14 C -0.037 4.037 15 H 0.149 0.851 16 N -0.345 5.345 17 C 0.301 3.699 18 O -0.412 6.412 19 C -0.140 4.140 20 C -0.117 4.117 21 C -0.088 4.088 22 C -0.192 4.192 23 C -0.062 4.062 24 N -0.193 5.193 25 C -0.043 4.043 26 C -0.136 4.136 27 C 0.023 3.977 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.109 0.891 35 H 0.236 0.764 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.172 0.828 41 H 0.171 0.829 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.134 -21.348 -8.563 23.568 hybrid contribution -0.155 0.435 1.110 1.202 sum 4.979 -20.913 -7.453 22.753 Atomic orbital electron populations 1.70031 1.05285 1.25548 1.53638 1.25054 0.95259 0.98472 1.00819 0.86307 0.79137 0.83687 0.77734 1.21409 1.21781 1.20436 1.19191 0.92832 0.85042 1.41304 0.91774 1.43975 1.37854 1.01473 1.47861 1.20765 0.88779 0.98726 0.87030 1.21880 0.99717 0.93092 0.99842 1.21958 0.97949 0.91261 0.98542 1.23528 0.96183 1.02655 0.99724 1.21913 0.93213 0.91509 0.97108 0.85137 1.45408 1.40224 1.34475 1.14395 1.20422 0.83546 0.82141 0.83770 1.90730 1.52139 1.70069 1.28235 1.20609 1.00091 0.97090 0.96211 1.20287 0.98217 0.96473 0.96757 1.21441 0.96468 0.93991 0.96925 1.22105 1.00396 1.01820 0.94880 1.22768 0.91893 0.92410 0.99157 1.67695 1.24080 1.07951 1.19523 1.22629 0.95631 0.97711 0.88338 1.21626 0.96219 0.98592 0.97173 1.20836 0.97394 0.87085 0.92412 0.93605 0.89159 0.96357 0.92128 0.93046 0.88377 0.89075 0.76368 0.87362 0.87650 0.85006 0.84784 0.82847 0.82931 0.93637 0.91736 0.92747 0.96329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 11.23 55.49 0.62 -25.22 16 2 C 0.00 0.07 4.89 -17.43 -0.09 -0.01 16 3 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.25 -6.84 9.54 -15.06 -0.14 -6.98 16 8 H 0.06 1.70 7.89 -52.48 -0.41 1.28 16 9 N -0.59 -14.35 2.94 -172.26 -0.51 -14.85 16 10 C 0.17 4.03 5.40 -3.67 -0.02 4.01 16 11 C -0.11 -1.99 5.83 -26.46 -0.15 -2.14 16 12 C -0.10 -1.52 1.94 -154.49 -0.30 -1.82 16 13 C -0.18 -2.55 9.87 -26.79 -0.26 -2.81 16 14 C 0.07 0.96 6.14 -68.00 -0.42 0.54 16 15 H 0.13 2.06 7.40 -51.93 -0.38 1.67 16 16 N -0.70 -7.89 5.35 -53.87 -0.29 -8.18 16 17 C 0.52 6.11 7.82 -10.99 -0.09 6.03 16 18 O -0.54 -8.74 15.60 5.55 0.09 -8.65 16 19 C -0.10 -0.77 5.86 -29.03 -0.17 -0.94 16 20 C -0.12 -1.11 4.39 -104.48 -0.46 -1.57 16 21 C -0.06 -0.55 9.86 -39.27 -0.39 -0.94 16 22 C -0.17 -1.41 10.11 -39.44 -0.40 -1.81 16 23 C 0.09 0.88 11.18 -17.55 -0.20 0.69 16 24 N -0.48 -5.67 10.36 -13.25 -0.14 -5.80 16 25 C 0.11 1.23 10.86 -17.55 -0.19 1.04 16 26 C -0.10 -1.53 5.37 -26.45 -0.14 -1.67 16 27 C 0.15 2.97 6.52 -3.67 -0.02 2.95 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.09 2.38 5.93 -51.93 -0.31 2.07 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.88 8.11 -51.93 -0.42 0.46 16 33 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 3.58 7.12 -40.82 -0.29 3.29 16 36 H 0.11 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.11 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 40 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 42 H 0.05 0.57 6.75 -51.93 -0.35 0.22 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 368.66 15.07 5.56 5.56 Total: -1.00 -33.31 368.66 -9.92 -43.23 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.78 Total: 2.92 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -3.44 Total: -5.45 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.31 Total: -54.05 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.31 -9.92 -43.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016574871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.389 kcal (2) G-P(sol) polarization free energy of solvation -33.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds