Wall clock time and date at job start Tue Mar 31 2020 10:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86809 * 119.99816 * 2 1 4 4 H 1.48503 * 109.46795 * 269.99981 * 3 2 1 5 5 H 1.48495 * 109.47170 * 30.00168 * 3 2 1 6 6 H 1.48502 * 109.46931 * 150.00408 * 3 2 1 7 7 C 1.38811 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99840 * 197.84278 * 7 2 1 9 9 N 1.36935 * 120.00102 * 17.84573 * 7 2 1 10 10 C 1.46850 * 120.38257 * 28.90999 * 9 7 2 11 11 C 1.53346 * 108.81152 * 123.07329 * 10 9 7 12 12 C 1.53178 * 108.76696 * 51.31835 * 11 10 9 13 13 C 1.52849 * 117.65925 * 90.01572 * 12 11 10 14 14 C 1.52826 * 117.71381 * 158.87667 * 12 11 10 15 15 H 1.08994 * 117.50279 * 359.85968 * 14 12 11 16 16 N 1.46502 * 117.52239 * 144.90903 * 14 12 11 17 17 C 1.34771 * 119.99952 * 204.97878 * 16 14 12 18 18 O 1.21286 * 120.00050 * 0.02562 * 17 16 14 19 19 C 1.50703 * 120.00077 * 180.02562 * 17 16 14 20 20 C 1.50698 * 109.47015 * 180.02562 * 19 17 16 21 21 C 1.38678 * 120.42067 * 269.72139 * 20 19 17 22 22 C 1.38628 * 118.41708 * 179.78796 * 21 20 19 23 23 C 1.38220 * 119.16419 * 0.50452 * 22 21 20 24 24 N 1.31858 * 120.76476 * 359.73699 * 23 22 21 25 25 C 1.31882 * 121.72576 * 359.97438 * 24 23 22 26 26 C 1.53182 * 115.07657 * 304.54423 * 12 11 10 27 27 C 1.46841 * 120.38291 * 208.88737 * 9 7 2 28 28 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.57994 * 3.27722 * 10 9 7 30 30 H 1.09000 * 109.57924 * 242.87276 * 10 9 7 31 31 H 1.09001 * 109.59203 * 291.52702 * 11 10 9 32 32 H 1.09001 * 109.70483 * 171.17497 * 11 10 9 33 33 H 1.08999 * 117.49865 * 0.24330 * 13 12 11 34 34 H 1.08993 * 117.50259 * 215.18796 * 13 12 11 35 35 H 0.97004 * 120.00226 * 24.98660 * 16 14 12 36 36 H 1.08993 * 109.46901 * 300.00094 * 19 17 16 37 37 H 1.08995 * 109.47167 * 60.00488 * 19 17 16 38 38 H 1.07997 * 120.78877 * 0.02562 * 21 20 19 39 39 H 1.08007 * 120.41504 * 180.22250 * 22 21 20 40 40 H 1.08004 * 119.61921 * 179.75081 * 23 22 21 41 41 H 1.08001 * 119.61984 * 180.02562 * 25 24 23 42 42 H 1.09005 * 109.58946 * 175.23096 * 26 12 11 43 43 H 1.08996 * 109.58980 * 295.66180 * 26 12 11 44 44 H 1.09002 * 109.58000 * 356.71908 * 27 9 7 45 45 H 1.08995 * 109.58017 * 116.98730 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0513 -1.2247 0.2861 9 7 1.3750 -2.3594 -0.3645 10 6 0.2557 -2.3251 -1.3145 11 6 0.5864 -3.2378 -2.5015 12 6 1.0070 -4.6099 -1.9658 13 6 -0.0871 -5.6573 -1.7606 14 6 0.9076 -5.8041 -2.9143 15 1 0.5398 -5.6165 -3.9230 16 7 1.9292 -6.8477 -2.7981 17 6 2.2173 -7.6296 -3.8573 18 8 1.6311 -7.4690 -4.9069 19 6 3.2677 -8.7036 -3.7376 20 6 3.3971 -9.4284 -5.0525 21 6 2.6245 -10.5495 -5.3154 22 6 2.7740 -11.1814 -6.5402 23 6 3.6893 -10.6829 -7.4480 24 7 4.4110 -9.6171 -7.1620 25 6 4.2912 -8.9873 -6.0094 26 6 2.1675 -4.5887 -0.9662 27 6 1.8055 -3.6490 0.1903 28 1 -0.4850 0.8400 0.0004 29 1 0.1081 -1.3047 -1.6683 30 1 -0.6511 -2.6783 -0.8235 31 1 1.4032 -2.8049 -3.0790 32 1 -0.2924 -3.3473 -3.1369 33 1 -1.1093 -5.3730 -2.0105 34 1 0.0188 -6.3368 -0.9150 35 1 2.3982 -6.9761 -1.9587 36 1 4.2238 -8.2493 -3.4779 37 1 2.9779 -9.4102 -2.9599 38 1 1.9202 -10.9192 -4.5849 39 1 2.1860 -12.0550 -6.7801 40 1 3.8147 -11.1719 -8.4028 41 1 4.8993 -8.1171 -5.8109 42 1 2.3363 -5.5943 -0.5808 43 1 3.0695 -4.2287 -1.4610 44 1 2.6778 -3.4999 0.8267 45 1 0.9956 -4.0831 0.7765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016574871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:35 Heat of formation + Delta-G solvation = 21.224623 kcal Electronic energy + Delta-G solvation = -25511.678916 eV Core-core repulsion = 21915.283794 eV Total energy + Delta-G solvation = -3596.395122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46004 -40.74289 -39.59209 -37.12425 -34.63722 -34.35882 -33.31981 -32.76890 -31.65347 -30.05431 -28.80841 -26.23021 -24.49686 -24.18185 -23.98149 -22.98798 -22.20601 -21.33784 -19.79711 -18.54042 -18.03092 -17.95402 -17.42276 -17.29118 -16.73026 -15.98755 -15.90984 -15.75335 -15.38218 -15.12427 -14.95508 -14.78780 -14.44751 -14.17899 -14.14903 -13.92277 -13.76737 -13.35064 -13.14284 -13.09705 -12.87694 -12.59739 -12.53230 -12.40680 -12.24958 -11.99825 -11.77713 -11.37669 -11.26665 -11.10636 -10.75973 -10.62864 -10.47450 -10.39010 -9.89045 -9.64254 -8.61993 -7.85936 -5.32097 0.16615 0.38487 1.46043 1.48352 1.56254 1.59118 2.12241 2.51535 2.92155 2.96225 3.28892 3.51340 3.65214 3.73138 3.81921 3.89979 3.93910 3.95617 4.02284 4.10811 4.14027 4.15143 4.51119 4.54225 4.59263 4.63380 4.74050 4.79272 4.85301 4.88143 4.93200 4.99338 5.04448 5.09994 5.18591 5.20439 5.31948 5.32441 5.39653 5.52520 5.58166 5.66376 5.77672 5.81126 6.41623 6.57079 7.05093 7.16745 7.27301 7.89654 8.40181 9.19015 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028469 B = 0.002360 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.305223 B =11862.649153 C =12182.064235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.260 4.260 8 H 0.066 0.934 9 N -0.609 5.609 10 C 0.181 3.819 11 C -0.095 4.095 12 C -0.116 4.116 13 C -0.169 4.169 14 C 0.086 3.914 15 H 0.112 0.888 16 N -0.685 5.685 17 C 0.515 3.485 18 O -0.585 6.585 19 C -0.089 4.089 20 C -0.125 4.125 21 C -0.072 4.072 22 C -0.171 4.171 23 C 0.078 3.922 24 N -0.518 5.518 25 C 0.090 3.910 26 C -0.081 4.081 27 C 0.143 3.857 28 H 0.249 0.751 29 H 0.051 0.949 30 H -0.001 1.001 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.417 0.583 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.174 0.826 41 H 0.157 0.843 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.068 -24.637 -6.600 26.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.247 4.247 3 Si 0.792 3.208 4 H -0.215 1.215 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.391 4.391 8 H 0.084 0.916 9 N -0.332 5.332 10 C 0.055 3.945 11 C -0.134 4.134 12 C -0.117 4.117 13 C -0.207 4.207 14 C -0.020 4.020 15 H 0.130 0.870 16 N -0.336 5.336 17 C 0.304 3.696 18 O -0.464 6.464 19 C -0.129 4.129 20 C -0.127 4.127 21 C -0.098 4.098 22 C -0.191 4.191 23 C -0.078 4.078 24 N -0.227 5.227 25 C -0.067 4.067 26 C -0.120 4.120 27 C 0.018 3.982 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.017 0.983 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.114 0.886 34 H 0.132 0.868 35 H 0.255 0.745 36 H 0.151 0.849 37 H 0.159 0.841 38 H 0.172 0.828 39 H 0.180 0.820 40 H 0.191 0.809 41 H 0.174 0.826 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 6.188 -24.103 -7.932 26.119 hybrid contribution -0.495 1.215 0.901 1.592 sum 5.693 -22.888 -7.031 24.611 Atomic orbital electron populations 1.70178 1.06658 1.25761 1.55390 1.25784 0.95988 1.01487 1.01462 0.85329 0.78270 0.79817 0.77431 1.21521 1.22248 1.19150 1.19517 0.93087 0.86317 1.40139 0.91619 1.44245 1.37854 1.02524 1.48588 1.20508 0.88160 0.97527 0.88286 1.21622 0.99729 0.94236 0.97842 1.21796 0.99540 0.90267 1.00125 1.23601 0.95589 1.01323 1.00214 1.21558 0.93598 0.90809 0.96051 0.86975 1.45305 1.39579 1.33466 1.15216 1.21136 0.83445 0.82310 0.82736 1.90722 1.54090 1.71499 1.30118 1.20666 0.99723 0.96278 0.96231 1.20506 0.97949 0.96917 0.97325 1.21846 0.96504 0.93806 0.97668 1.22460 0.99863 1.02364 0.94403 1.23224 0.92024 0.92141 1.00445 1.67658 1.25466 1.09205 1.20373 1.22857 0.96735 0.98288 0.88796 1.21448 0.95563 0.99731 0.95279 1.21030 0.97207 0.85899 0.94052 0.94186 0.93014 0.98260 0.93556 0.91911 0.88619 0.86842 0.74506 0.84860 0.84147 0.82794 0.81968 0.80854 0.82561 0.89160 0.92452 0.92631 0.96407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.40 11.23 21.65 0.24 -55.15 16 2 C -0.05 -2.90 4.89 84.86 0.41 -2.48 16 3 Si 0.96 44.94 29.59 68.60 2.03 46.97 16 4 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 7 C -0.26 -14.17 9.54 84.03 0.80 -13.37 16 8 H 0.07 3.48 7.89 -2.91 -0.02 3.46 16 9 N -0.61 -29.95 2.94 -698.89 -2.05 -32.00 16 10 C 0.18 8.70 5.40 86.43 0.47 9.17 16 11 C -0.09 -3.60 5.83 30.77 0.18 -3.42 16 12 C -0.12 -3.48 1.94 -52.17 -0.10 -3.58 16 13 C -0.17 -4.25 9.87 30.56 0.30 -3.95 16 14 C 0.09 2.23 6.14 44.95 0.28 2.50 16 15 H 0.11 3.41 7.40 -2.39 -0.02 3.39 16 16 N -0.68 -13.10 5.35 -442.74 -2.37 -15.47 16 17 C 0.52 10.77 7.82 87.66 0.69 11.45 16 18 O -0.58 -18.32 15.60 -3.05 -0.05 -18.36 16 19 C -0.09 -1.05 5.86 29.10 0.17 -0.88 16 20 C -0.12 -2.14 4.39 -19.77 -0.09 -2.22 16 21 C -0.07 -1.09 9.86 22.47 0.22 -0.87 16 22 C -0.17 -2.44 10.11 22.36 0.23 -2.22 16 23 C 0.08 1.38 11.18 84.68 0.95 2.32 16 24 N -0.52 -11.95 10.36 -195.84 -2.03 -13.98 16 25 C 0.09 1.87 10.86 84.67 0.92 2.79 16 26 C -0.08 -2.34 5.37 30.77 0.17 -2.18 16 27 C 0.14 5.52 6.52 86.43 0.56 6.08 16 28 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.05 2.86 5.93 -2.39 -0.01 2.85 16 30 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 2.18 8.11 -2.39 -0.02 2.16 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.42 5.37 7.12 -92.71 -0.66 4.71 16 36 H 0.13 0.94 8.09 -2.39 -0.02 0.92 16 37 H 0.14 0.70 8.09 -2.39 -0.02 0.69 16 38 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 41 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 42 H 0.09 1.81 6.75 -2.38 -0.02 1.79 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.06 2.09 7.92 -2.39 -0.02 2.07 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -75.83 368.66 2.26 -73.57 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.33 Total: 15.26 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.15 Total: -0.84 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -6.20 Total: -116.60 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.36 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -75.83 2.26 -73.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016574871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.795 kcal (2) G-P(sol) polarization free energy of solvation -75.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds