Wall clock time and date at job start Tue Mar 31 2020 11:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48510 * 109.46891 * 239.99833 * 3 2 1 5 5 H 1.48496 * 109.47509 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47271 * 120.00176 * 3 2 1 7 7 C 1.38812 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99927 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.91109 * 23.74997 * 10 9 7 12 12 C 1.53787 * 113.61210 * 155.00261 * 10 9 7 13 13 C 1.53779 * 87.07963 * 139.97940 * 12 10 9 14 14 H 1.08999 * 113.61062 * 219.93155 * 13 12 10 15 15 N 1.46502 * 113.61301 * 89.11687 * 13 12 10 16 16 C 1.34783 * 119.99683 * 154.99921 * 15 13 12 17 17 O 1.21278 * 120.00208 * 359.97438 * 16 15 13 18 18 C 1.50705 * 119.99542 * 179.97438 * 16 15 13 19 19 H 1.08999 * 109.25287 * 60.52206 * 18 16 15 20 20 C 1.52726 * 109.25333 * 179.97438 * 18 16 15 21 21 C 1.53325 * 108.42509 * 171.55793 * 20 18 16 22 22 C 1.52772 * 108.34904 * 290.10567 * 21 20 18 23 23 C 1.50492 * 110.56285 * 50.79956 * 22 21 20 24 24 C 1.39185 * 117.97512 * 162.70458 * 23 22 21 25 25 C 1.38408 * 118.87026 * 179.79505 * 24 23 22 26 26 C 1.38240 * 118.84290 * 359.97438 * 25 24 23 27 27 N 1.31508 * 120.60879 * 0.13250 * 26 25 24 28 28 C 1.32702 * 122.40227 * 359.94333 * 27 26 25 29 29 C 1.53779 * 87.08402 * 334.56577 * 13 12 10 30 30 H 0.96994 * 120.00158 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99584 * 0.02562 * 9 7 2 32 32 H 1.08997 * 113.61028 * 254.52900 * 12 10 9 33 33 H 1.09000 * 113.61529 * 25.43039 * 12 10 9 34 34 H 0.96996 * 120.00397 * 334.99617 * 15 13 12 35 35 H 1.09003 * 109.67165 * 291.29026 * 20 18 16 36 36 H 1.08994 * 109.67234 * 51.78461 * 20 18 16 37 37 H 1.09003 * 109.69108 * 49.81427 * 21 20 18 38 38 H 1.08999 * 109.69185 * 170.38533 * 21 20 18 39 39 H 1.08996 * 109.25853 * 171.08691 * 22 21 20 40 40 H 1.09002 * 109.25323 * 290.55753 * 22 21 20 41 41 H 1.07999 * 120.56406 * 359.81970 * 24 23 22 42 42 H 1.08002 * 120.57912 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.69630 * 180.11016 * 26 25 24 44 44 H 1.09002 * 113.61557 * 270.88569 * 29 13 12 45 45 H 1.09004 * 113.61501 * 139.97990 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0662 -3.5647 0.4049 12 6 1.2603 -4.8288 0.5960 13 6 1.8481 -5.6975 -0.5285 14 1 1.1339 -6.4021 -0.9546 15 7 3.1258 -6.3237 -0.1794 16 6 3.5107 -7.4586 -0.7960 17 8 2.7993 -7.9618 -1.6395 18 6 4.8253 -8.1024 -0.4372 19 1 4.8173 -8.3715 0.6190 20 6 5.0138 -9.3643 -1.2767 21 6 6.4387 -9.8854 -1.0551 22 6 7.4146 -8.9124 -1.7146 23 6 7.1319 -7.5011 -1.2753 24 6 8.1232 -6.5445 -1.4739 25 6 7.8812 -5.2397 -1.0807 26 6 6.6628 -4.9319 -0.5048 27 7 5.7501 -5.8626 -0.3309 28 6 5.9436 -7.1246 -0.6925 29 6 1.9992 -4.4021 -1.3433 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0002 32 1 1.5918 -5.1212 1.5923 33 1 0.1800 -4.7003 0.5290 34 1 3.6947 -5.9214 0.4955 35 1 4.2937 -10.1218 -0.9672 36 1 4.8684 -9.1288 -2.3309 37 1 6.6458 -9.9453 0.0134 38 1 6.5430 -10.8723 -1.5058 39 1 8.4333 -9.1793 -1.4336 40 1 7.3114 -8.9788 -2.7977 41 1 9.0651 -6.8158 -1.9274 42 1 8.6309 -4.4753 -1.2221 43 1 6.4587 -3.9177 -0.1946 44 1 1.1209 -4.1569 -1.9404 45 1 2.9274 -4.3501 -1.9125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020499155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:02 Heat of formation + Delta-G solvation = 22.668506 kcal Electronic energy + Delta-G solvation = -26356.312538 eV Core-core repulsion = 22759.980028 eV Total energy + Delta-G solvation = -3596.332510 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18226 -39.54411 -37.99490 -36.47505 -34.00465 -33.60349 -32.25001 -30.68018 -30.27172 -29.61603 -25.24109 -24.99780 -24.33843 -23.49247 -23.32301 -21.95485 -20.76155 -19.87016 -18.75616 -17.42537 -17.03035 -16.74177 -16.68654 -15.87873 -15.52708 -14.88942 -14.74829 -14.50225 -14.15943 -13.95448 -13.90401 -13.61450 -13.39521 -13.14332 -12.91200 -12.70036 -12.47044 -12.18621 -11.90845 -11.74291 -11.60167 -11.39534 -11.18804 -10.85788 -10.85617 -10.71767 -10.22335 -10.18649 -9.98898 -9.83331 -9.75016 -9.50338 -9.46694 -8.92838 -8.83859 -8.53372 -6.92350 -5.75502 -3.03836 0.87561 1.04689 2.77512 3.36658 3.44133 3.48366 3.49691 3.63148 3.96321 4.24625 4.47701 4.53523 4.60909 4.62964 4.73641 4.86135 4.98845 5.08158 5.14370 5.19291 5.20325 5.35423 5.38102 5.47660 5.51022 5.53832 5.58093 5.61072 5.68156 5.83492 5.96554 5.97151 6.04029 6.06162 6.08780 6.27025 6.35959 6.43255 6.48316 6.70354 6.79402 6.83935 7.21697 7.70763 7.78093 7.89163 8.43284 8.52086 9.54040 10.13013 10.47605 11.47037 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.003443 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.653555 B = 8131.085772 C = 9523.595911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.169 3.831 11 H 0.075 0.925 12 C -0.159 4.159 13 C 0.115 3.885 14 H 0.092 0.908 15 N -0.687 5.687 16 C 0.526 3.474 17 O -0.550 6.550 18 C -0.056 4.056 19 H 0.112 0.888 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.078 4.078 23 C -0.121 4.121 24 C -0.078 4.078 25 C -0.171 4.171 26 C 0.112 3.888 27 N -0.481 5.481 28 C 0.136 3.864 29 C -0.173 4.173 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.410 0.590 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.162 0.838 44 H 0.082 0.918 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.353 -19.898 -0.432 26.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.351 5.351 10 C 0.057 3.943 11 H 0.093 0.907 12 C -0.199 4.199 13 C 0.009 3.991 14 H 0.110 0.890 15 N -0.338 5.338 16 C 0.311 3.689 17 O -0.429 6.429 18 C -0.078 4.078 19 H 0.130 0.870 20 C -0.138 4.138 21 C -0.158 4.158 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.104 4.104 25 C -0.191 4.191 26 C -0.047 4.047 27 N -0.190 5.190 28 C 0.000 4.000 29 C -0.215 4.215 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.248 0.752 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.179 0.821 44 H 0.100 0.900 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.145 -19.815 -0.614 25.567 hybrid contribution 1.327 1.205 -0.149 1.799 sum 17.473 -18.611 -0.762 25.539 Atomic orbital electron populations 1.69647 1.05119 1.25793 1.57589 1.24755 0.95509 0.97715 1.02983 0.86276 0.78543 0.83613 0.77801 1.21300 1.21715 1.21263 1.19250 0.90999 0.84269 1.42754 0.91222 1.42411 1.05744 0.99912 1.87025 1.21597 0.95076 0.84941 0.92660 0.90677 1.23839 1.01358 0.97491 0.97237 1.21794 0.85350 0.93994 0.97989 0.88999 1.45776 1.21211 1.24898 1.41889 1.20068 0.86628 0.80860 0.81369 1.90674 1.55185 1.64076 1.32943 1.20201 0.90450 0.94236 1.02870 0.87021 1.21409 0.96676 0.94783 1.00954 1.21605 0.94373 0.98599 1.01239 1.20451 0.99978 0.90150 1.00977 1.20377 0.94422 0.97217 1.00317 1.21576 0.98815 0.92820 0.97171 1.22160 0.99197 0.97224 1.00541 1.22760 0.88924 0.98731 0.94297 1.67350 1.33122 1.00812 1.17701 1.20552 0.92865 0.91212 0.95365 1.24237 1.01595 0.95538 1.00153 0.93440 0.78088 0.91880 0.89227 0.75175 0.90149 0.90304 0.91378 0.90623 0.90492 0.90202 0.84898 0.84604 0.82121 0.89970 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -18.09 5.40 -52.64 -0.28 -18.38 16 10 C 0.17 3.43 4.36 -67.12 -0.29 3.13 16 11 H 0.08 1.51 8.10 -51.93 -0.42 1.09 16 12 C -0.16 -2.71 7.58 -25.92 -0.20 -2.91 16 13 C 0.11 1.91 4.32 -67.12 -0.29 1.62 16 14 H 0.09 1.60 7.46 -51.93 -0.39 1.21 16 15 N -0.69 -10.26 4.66 -53.02 -0.25 -10.51 16 16 C 0.53 7.88 7.06 -10.98 -0.08 7.80 16 17 O -0.55 -10.01 15.43 5.56 0.09 -9.92 16 18 C -0.06 -0.62 2.71 -93.05 -0.25 -0.87 16 19 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 20 C -0.10 -0.95 4.65 -26.70 -0.12 -1.08 16 21 C -0.12 -0.81 5.98 -26.68 -0.16 -0.97 16 22 C -0.08 -0.54 5.68 -28.10 -0.16 -0.70 16 23 C -0.12 -1.16 5.74 -104.60 -0.60 -1.76 16 24 C -0.08 -0.66 9.75 -39.17 -0.38 -1.05 16 25 C -0.17 -1.55 10.12 -39.52 -0.40 -1.95 16 26 C 0.11 1.25 11.19 -17.69 -0.20 1.05 16 27 N -0.48 -6.08 7.55 -9.51 -0.07 -6.15 16 28 C 0.14 1.57 6.19 -82.44 -0.51 1.06 16 29 C -0.17 -3.30 7.68 -25.92 -0.20 -3.50 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.39 10.36 7.92 -40.82 -0.32 10.04 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 1.54 8.12 -51.93 -0.42 1.12 16 34 H 0.41 5.76 7.03 -40.82 -0.29 5.47 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.89 7.78 -51.93 -0.40 0.48 16 37 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.40 8.13 -51.93 -0.42 -0.02 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -33.34 365.41 -10.26 -43.60 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -6.86 Total: 13.63 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -4.09 Total: -7.51 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.12 Total: -62.68 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.92 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.34 -10.26 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020499155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.269 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds