Wall clock time and date at job start Tue Mar 31 2020 11:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 119.99688 * 2 1 4 4 H 1.48510 * 109.46891 * 239.99833 * 3 2 1 5 5 H 1.48496 * 109.47509 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47271 * 120.00176 * 3 2 1 7 7 C 1.38812 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00049 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99927 * 179.97438 * 9 7 2 11 11 H 1.08994 * 112.91109 * 23.74997 * 10 9 7 12 12 C 1.53787 * 113.61210 * 155.00261 * 10 9 7 13 13 C 1.53779 * 87.07963 * 139.97940 * 12 10 9 14 14 H 1.08999 * 113.61062 * 219.93155 * 13 12 10 15 15 N 1.46502 * 113.61301 * 89.11687 * 13 12 10 16 16 C 1.34783 * 119.99683 * 154.99921 * 15 13 12 17 17 O 1.21278 * 120.00208 * 359.97438 * 16 15 13 18 18 C 1.50705 * 119.99542 * 179.97438 * 16 15 13 19 19 H 1.08999 * 109.25287 * 60.52206 * 18 16 15 20 20 C 1.52726 * 109.25333 * 179.97438 * 18 16 15 21 21 C 1.53325 * 108.42509 * 171.55793 * 20 18 16 22 22 C 1.52772 * 108.34904 * 290.10567 * 21 20 18 23 23 C 1.50492 * 110.56285 * 50.79956 * 22 21 20 24 24 C 1.39185 * 117.97512 * 162.70458 * 23 22 21 25 25 C 1.38408 * 118.87026 * 179.79505 * 24 23 22 26 26 C 1.38240 * 118.84290 * 359.97438 * 25 24 23 27 27 N 1.31508 * 120.60879 * 0.13250 * 26 25 24 28 28 C 1.32702 * 122.40227 * 359.94333 * 27 26 25 29 29 C 1.53779 * 87.08402 * 334.56577 * 13 12 10 30 30 H 0.96994 * 120.00158 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99584 * 0.02562 * 9 7 2 32 32 H 1.08997 * 113.61028 * 254.52900 * 12 10 9 33 33 H 1.09000 * 113.61529 * 25.43039 * 12 10 9 34 34 H 0.96996 * 120.00397 * 334.99617 * 15 13 12 35 35 H 1.09003 * 109.67165 * 291.29026 * 20 18 16 36 36 H 1.08994 * 109.67234 * 51.78461 * 20 18 16 37 37 H 1.09003 * 109.69108 * 49.81427 * 21 20 18 38 38 H 1.08999 * 109.69185 * 170.38533 * 21 20 18 39 39 H 1.08996 * 109.25853 * 171.08691 * 22 21 20 40 40 H 1.09002 * 109.25323 * 290.55753 * 22 21 20 41 41 H 1.07999 * 120.56406 * 359.81970 * 24 23 22 42 42 H 1.08002 * 120.57912 * 180.02562 * 25 24 23 43 43 H 1.08001 * 119.69630 * 180.11016 * 26 25 24 44 44 H 1.09002 * 113.61557 * 270.88569 * 29 13 12 45 45 H 1.09004 * 113.61501 * 139.97990 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 3.0662 -3.5647 0.4049 12 6 1.2603 -4.8288 0.5960 13 6 1.8481 -5.6975 -0.5285 14 1 1.1339 -6.4021 -0.9546 15 7 3.1258 -6.3237 -0.1794 16 6 3.5107 -7.4586 -0.7960 17 8 2.7993 -7.9618 -1.6395 18 6 4.8253 -8.1024 -0.4372 19 1 4.8173 -8.3715 0.6190 20 6 5.0138 -9.3643 -1.2767 21 6 6.4387 -9.8854 -1.0551 22 6 7.4146 -8.9124 -1.7146 23 6 7.1319 -7.5011 -1.2753 24 6 8.1232 -6.5445 -1.4739 25 6 7.8812 -5.2397 -1.0807 26 6 6.6628 -4.9319 -0.5048 27 7 5.7501 -5.8626 -0.3309 28 6 5.9436 -7.1246 -0.6925 29 6 1.9992 -4.4021 -1.3433 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 -0.0002 32 1 1.5918 -5.1212 1.5923 33 1 0.1800 -4.7003 0.5290 34 1 3.6947 -5.9214 0.4955 35 1 4.2937 -10.1218 -0.9672 36 1 4.8684 -9.1288 -2.3309 37 1 6.6458 -9.9453 0.0134 38 1 6.5430 -10.8723 -1.5058 39 1 8.4333 -9.1793 -1.4336 40 1 7.3114 -8.9788 -2.7977 41 1 9.0651 -6.8158 -1.9274 42 1 8.6309 -4.4753 -1.2221 43 1 6.4587 -3.9177 -0.1946 44 1 1.1209 -4.1569 -1.9404 45 1 2.9274 -4.3501 -1.9125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020499155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:02 Heat of formation + Delta-G solvation = 1.858395 kcal Electronic energy + Delta-G solvation = -26357.214933 eV Core-core repulsion = 22759.980028 eV Total energy + Delta-G solvation = -3597.234904 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.04165 -40.76814 -39.36472 -37.26015 -35.74009 -34.65885 -33.66374 -31.82668 -31.36049 -30.80147 -26.66617 -26.50474 -25.63228 -24.39658 -24.19784 -23.44722 -21.80931 -20.64477 -20.31022 -19.15548 -18.37663 -17.67489 -17.49132 -17.01671 -16.62951 -16.51305 -15.88854 -15.60567 -15.53922 -15.15243 -14.98403 -14.62344 -14.57267 -14.22354 -13.84223 -13.76313 -13.50077 -13.42886 -13.32712 -13.25240 -12.87138 -12.76851 -12.59229 -12.21259 -12.09662 -11.86846 -11.80622 -11.73615 -11.49393 -11.19298 -11.01953 -10.83843 -10.56932 -10.34349 -9.90181 -9.69585 -8.99137 -7.94145 -5.22983 0.12744 0.33741 1.47056 1.50379 1.56398 1.60229 2.24112 2.56872 2.82183 3.16958 3.36871 3.49657 3.71384 3.79613 3.83301 3.87961 3.90754 3.96071 4.10720 4.16997 4.26316 4.32224 4.32746 4.38625 4.42838 4.56634 4.68260 4.73710 4.85556 4.88535 4.90657 4.92307 4.99311 5.11219 5.13040 5.21191 5.21987 5.28850 5.30813 5.39000 5.43182 5.50824 5.74812 5.78401 6.27477 6.67215 6.99448 7.32385 7.33533 8.09369 8.33462 9.29101 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016969 B = 0.003443 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.653555 B = 8131.085772 C = 9523.595911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.973 3.027 4 H -0.279 1.279 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.244 4.244 8 H 0.077 0.923 9 N -0.726 5.726 10 C 0.160 3.840 11 H 0.078 0.922 12 C -0.142 4.142 13 C 0.131 3.869 14 H 0.088 0.912 15 N -0.682 5.682 16 C 0.521 3.479 17 O -0.586 6.586 18 C -0.049 4.049 19 H 0.130 0.870 20 C -0.098 4.098 21 C -0.113 4.113 22 C -0.078 4.078 23 C -0.123 4.123 24 C -0.079 4.079 25 C -0.167 4.167 26 C 0.086 3.914 27 N -0.509 5.509 28 C 0.110 3.890 29 C -0.168 4.168 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.416 0.584 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.068 0.932 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.309 -21.248 -0.105 29.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.200 1.200 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.364 5.364 10 C 0.050 3.950 11 H 0.096 0.904 12 C -0.181 4.181 13 C 0.024 3.976 14 H 0.106 0.894 15 N -0.333 5.333 16 C 0.308 3.692 17 O -0.467 6.467 18 C -0.070 4.070 19 H 0.148 0.852 20 C -0.136 4.136 21 C -0.150 4.150 22 C -0.115 4.115 23 C -0.124 4.124 24 C -0.105 4.105 25 C -0.187 4.187 26 C -0.073 4.073 27 N -0.218 5.218 28 C -0.025 4.025 29 C -0.210 4.210 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.255 0.745 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.183 0.817 42 H 0.178 0.822 43 H 0.178 0.822 44 H 0.087 0.913 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 19.158 -21.206 -0.272 28.580 hybrid contribution 0.457 1.566 -0.294 1.658 sum 19.615 -19.640 -0.566 27.763 Atomic orbital electron populations 1.69813 1.06673 1.26148 1.59513 1.25586 0.96378 1.01169 1.03725 0.85213 0.77213 0.79116 0.78239 1.20555 1.22311 1.20020 1.19665 0.91532 0.85327 1.41106 0.90520 1.42587 1.05393 1.01010 1.87395 1.21834 0.95365 0.83971 0.93797 0.90384 1.23658 1.00906 0.95312 0.98272 1.21519 0.86244 0.92922 0.96922 0.89355 1.45765 1.20534 1.25001 1.42002 1.20819 0.87601 0.80346 0.80396 1.90651 1.56622 1.65000 1.34459 1.20235 0.88032 0.94525 1.04216 0.85202 1.21409 0.98977 0.94063 0.99179 1.21597 0.92009 0.99312 1.02120 1.20551 1.01371 0.88480 1.01105 1.20726 0.93760 0.98935 0.99021 1.21987 0.99755 0.92246 0.96464 1.22438 0.98706 0.98318 0.99221 1.22938 0.89995 0.98713 0.95690 1.67234 1.34212 1.01611 1.18731 1.20672 0.93855 0.90984 0.97006 1.24083 1.00425 0.97086 0.99418 0.94027 0.79382 0.89837 0.89289 0.74476 0.90032 0.92537 0.90378 0.88637 0.87902 0.89876 0.81695 0.82223 0.82206 0.91347 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 2 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 3 Si 0.97 46.32 29.55 68.60 2.03 48.34 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 7 C -0.24 -13.73 9.97 84.03 0.84 -12.90 16 8 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 9 N -0.73 -37.47 5.40 -320.44 -1.73 -39.20 16 10 C 0.16 6.53 4.36 45.52 0.20 6.73 16 11 H 0.08 3.13 8.10 -2.39 -0.02 3.11 16 12 C -0.14 -4.77 7.58 31.12 0.24 -4.53 16 13 C 0.13 4.37 4.32 45.52 0.20 4.56 16 14 H 0.09 3.09 7.46 -2.39 -0.02 3.07 16 15 N -0.68 -20.26 4.66 -440.03 -2.05 -22.31 16 16 C 0.52 15.59 7.06 87.66 0.62 16.21 16 17 O -0.59 -21.61 15.43 -3.02 -0.05 -21.66 16 18 C -0.05 -1.04 2.71 -12.37 -0.03 -1.07 16 19 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 20 C -0.10 -1.75 4.65 30.61 0.14 -1.60 16 21 C -0.11 -1.19 5.98 30.63 0.18 -1.00 16 22 C -0.08 -0.83 5.68 29.71 0.17 -0.66 16 23 C -0.12 -2.06 5.74 -19.85 -0.11 -2.18 16 24 C -0.08 -1.11 9.75 22.54 0.22 -0.89 16 25 C -0.17 -2.69 10.12 22.31 0.23 -2.46 16 26 C 0.09 1.86 11.19 84.74 0.95 2.81 16 27 N -0.51 -12.65 7.55 -184.00 -1.39 -14.04 16 28 C 0.11 2.42 6.19 42.28 0.26 2.69 16 29 C -0.17 -6.56 7.68 31.12 0.24 -6.32 16 30 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 31 H 0.37 20.66 7.92 -92.71 -0.73 19.93 16 32 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.09 3.05 8.12 -2.39 -0.02 3.03 16 34 H 0.42 11.52 7.03 -92.71 -0.65 10.87 16 35 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.06 1.26 7.78 -2.39 -0.02 1.24 16 37 H 0.08 0.70 8.10 -2.39 -0.02 0.68 16 38 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.10 0.61 8.13 -2.39 -0.02 0.59 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.17 1.22 8.06 -2.91 -0.02 1.19 16 42 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 43 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 44 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -73.07 365.41 1.51 -71.57 By element: Atomic # 1 Polarization: 42.17 SS G_CDS: -0.38 Total: 41.79 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: 4.80 Total: -4.60 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -4.89 Total: -135.45 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -73.07 1.51 -71.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020499155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.424 kcal (2) G-P(sol) polarization free energy of solvation -73.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds