Wall clock time and date at job start Tue Mar 31 2020 11:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00558 * 2 1 4 4 H 1.48507 * 109.46938 * 269.99851 * 3 2 1 5 5 H 1.48495 * 109.47082 * 29.99282 * 3 2 1 6 6 H 1.48501 * 109.47433 * 149.99598 * 3 2 1 7 7 C 1.38819 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99909 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00387 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85309 * 26.37078 * 10 9 7 12 12 C 1.53785 * 113.61848 * 157.56930 * 10 9 7 13 13 C 1.53785 * 87.07900 * 89.20220 * 12 10 9 14 14 H 1.08998 * 113.61038 * 140.07065 * 13 12 10 15 15 N 1.46506 * 113.61181 * 270.88343 * 13 12 10 16 16 C 1.34781 * 119.99742 * 275.12094 * 15 13 12 17 17 O 1.21508 * 120.00357 * 359.72254 * 16 15 13 18 18 C 1.48163 * 119.99626 * 179.72472 * 16 15 13 19 19 C 1.39172 * 119.82258 * 179.97438 * 18 16 15 20 20 C 1.39003 * 119.25284 * 179.88453 * 19 18 16 21 21 C 1.37855 * 118.56293 * 359.94307 * 20 19 18 22 22 C 1.39126 * 119.06900 * 0.19621 * 21 20 19 23 23 N 1.31318 * 121.19937 * 359.54041 * 22 21 20 24 24 C 1.50504 * 122.48746 * 180.35175 * 21 20 19 25 25 C 1.52782 * 110.48034 * 342.27225 * 24 21 20 26 26 C 1.53317 * 108.50603 * 51.11957 * 25 24 21 27 27 C 1.50360 * 118.61370 * 179.74017 * 20 19 18 28 28 C 1.53777 * 87.08300 * 25.43286 * 13 12 10 29 29 H 0.97005 * 119.99647 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00085 * 359.97438 * 9 7 2 31 31 H 1.08995 * 113.61063 * 334.65002 * 12 10 9 32 32 H 1.09005 * 113.61516 * 203.74821 * 12 10 9 33 33 H 0.96997 * 119.99685 * 94.83916 * 15 13 12 34 34 H 1.07998 * 120.37645 * 359.85890 * 19 18 16 35 35 H 1.07998 * 119.39860 * 179.83225 * 22 21 20 36 36 H 1.09006 * 109.29840 * 221.96336 * 24 21 20 37 37 H 1.08997 * 109.30486 * 102.58409 * 24 21 20 38 38 H 1.09002 * 109.63138 * 291.41942 * 25 24 21 39 39 H 1.08996 * 109.63356 * 170.83215 * 25 24 21 40 40 H 1.09003 * 109.63508 * 170.47013 * 26 25 24 41 41 H 1.09000 * 109.80563 * 49.95433 * 26 25 24 42 42 H 1.08997 * 109.30633 * 283.02530 * 27 20 19 43 43 H 1.08999 * 109.30216 * 42.61670 * 27 20 19 44 44 H 1.08999 * 113.61535 * 89.11760 * 28 13 12 45 45 H 1.08998 * 113.61529 * 220.01788 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0017 11 1 3.0485 -3.5734 0.4486 12 6 1.2374 -4.8413 0.5392 13 6 0.7561 -5.0615 -0.9047 14 1 0.6945 -6.1119 -1.1889 15 7 -0.4553 -4.3092 -1.2407 16 6 -1.6680 -4.8176 -0.9447 17 8 -1.7567 -5.9020 -0.4039 18 6 -2.8929 -4.0540 -1.2790 19 6 -4.1433 -4.5826 -0.9723 20 6 -5.2846 -3.8550 -1.2890 21 6 -5.1357 -2.6275 -1.8984 22 6 -3.8546 -2.1626 -2.1781 23 7 -2.7917 -2.8670 -1.8643 24 6 -6.3096 -1.7630 -2.2725 25 6 -7.5949 -2.5886 -2.2976 26 6 -7.7050 -3.3581 -0.9761 27 6 -6.6282 -4.4423 -0.9565 28 6 2.0543 -4.3735 -1.3589 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 0.4425 -4.5466 1.2243 32 1 1.8491 -5.6570 0.9247 33 1 -0.3845 -3.4435 -1.6723 34 1 -4.2260 -5.5473 -0.4940 35 1 -3.7319 -1.2028 -2.6579 36 1 -6.1392 -1.3314 -3.2589 37 1 -6.4119 -0.9591 -1.5436 38 1 -7.5620 -3.2923 -3.1294 39 1 -8.4535 -1.9263 -2.4084 40 1 -8.6901 -3.8186 -0.9013 41 1 -7.5544 -2.6770 -0.1385 42 1 -6.8770 -5.2104 -1.6888 43 1 -6.5900 -4.8902 0.0365 44 1 2.8893 -5.0613 -1.4923 45 1 1.9188 -3.7013 -2.2062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022400429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:24 Heat of formation + Delta-G solvation = 19.186117 kcal Electronic energy + Delta-G solvation = -26268.002291 eV Core-core repulsion = 22671.518773 eV Total energy + Delta-G solvation = -3596.483518 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80288 -39.54606 -37.80058 -36.70159 -33.59774 -32.85937 -32.55037 -31.12059 -29.84139 -29.40660 -25.23253 -24.96321 -24.17015 -23.87827 -22.74622 -22.40569 -20.80842 -19.37141 -18.68428 -17.62938 -17.10680 -16.49319 -15.77210 -15.39121 -15.20370 -14.91033 -14.68547 -14.59464 -14.20712 -14.10226 -13.87303 -13.42572 -13.36256 -12.99167 -12.90968 -12.70568 -12.29941 -12.13437 -11.89599 -11.71358 -11.38709 -11.15440 -11.14215 -10.86269 -10.77030 -10.75332 -10.29688 -10.14637 -9.94831 -9.68330 -9.50445 -9.38067 -9.16277 -8.91320 -8.83916 -8.40613 -6.97057 -5.75398 -3.05576 0.82076 1.33407 3.01729 3.43330 3.48021 3.49457 3.50545 4.07840 4.34282 4.43995 4.51601 4.58979 4.64077 4.79102 4.83256 5.08973 5.16095 5.18013 5.26898 5.28871 5.30242 5.46915 5.50278 5.53794 5.58781 5.60654 5.72172 5.75077 5.84237 5.90245 5.90812 5.97639 6.04929 6.10031 6.20538 6.30031 6.37935 6.46677 6.69066 6.73793 6.74492 6.88934 7.15367 7.72754 7.86380 8.16009 8.41973 8.61982 9.53152 10.10584 10.45807 11.45558 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.004082 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.123260 B = 6857.487788 C = 8736.327987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.009 4.009 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.165 3.835 11 H 0.063 0.937 12 C -0.168 4.168 13 C 0.125 3.875 14 H 0.080 0.920 15 N -0.680 5.680 16 C 0.572 3.428 17 O -0.548 6.548 18 C 0.077 3.923 19 C -0.115 4.115 20 C -0.049 4.049 21 C -0.113 4.113 22 C 0.109 3.891 23 N -0.438 5.438 24 C -0.079 4.079 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.081 4.081 28 C -0.180 4.180 29 H 0.254 0.746 30 H 0.387 0.613 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.421 0.579 34 H 0.144 0.856 35 H 0.161 0.839 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.075 -7.934 -5.444 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.378 4.378 8 H 0.089 0.911 9 N -0.346 5.346 10 C 0.052 3.948 11 H 0.081 0.919 12 C -0.208 4.208 13 C 0.020 3.980 14 H 0.098 0.902 15 N -0.331 5.331 16 C 0.357 3.643 17 O -0.426 6.426 18 C -0.060 4.060 19 C -0.136 4.136 20 C -0.056 4.056 21 C -0.115 4.115 22 C -0.053 4.053 23 N -0.148 5.148 24 C -0.116 4.116 25 C -0.157 4.157 26 C -0.158 4.158 27 C -0.118 4.118 28 C -0.221 4.221 29 H 0.064 0.936 30 H 0.223 0.777 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.260 0.740 34 H 0.161 0.839 35 H 0.178 0.822 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.120 -8.225 -5.209 16.338 hybrid contribution -0.553 1.103 0.019 1.234 sum -13.673 -7.122 -5.190 16.267 Atomic orbital electron populations 1.69689 1.04933 1.25543 1.56920 1.24752 0.95510 0.97595 1.02681 0.86210 0.78680 0.83913 0.77458 1.21720 1.21881 1.20807 1.19264 0.91088 0.83940 1.43462 0.91052 1.42287 1.05911 0.99343 1.87054 1.21170 0.95163 0.85941 0.92479 0.91881 1.23853 1.00751 0.99854 0.96316 1.21772 0.84284 0.94942 0.97020 0.90156 1.45700 1.04089 1.23655 1.59674 1.17855 0.83005 0.84796 0.78633 1.90720 1.86993 1.21218 1.43648 1.21118 0.93512 0.92399 0.98928 1.22045 0.91400 1.01115 0.99043 1.19785 0.95497 0.93764 0.96574 1.20744 0.96617 0.95277 0.98884 1.22860 0.86713 0.99098 0.96588 1.67599 1.33808 1.04594 1.08832 1.20432 0.91673 0.97178 1.02355 1.21559 0.97162 0.99089 0.97905 1.21578 0.98283 0.97754 0.98218 1.20462 0.90668 0.98180 1.02498 1.24156 0.95122 1.00219 1.02620 0.93571 0.77737 0.91371 0.89711 0.74003 0.83858 0.82223 0.90151 0.89955 0.91567 0.91213 0.91243 0.91346 0.90088 0.90149 0.89850 0.90797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.36 13.06 55.49 0.72 -26.63 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.25 -6.80 9.97 -15.06 -0.15 -6.95 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.71 -17.77 5.02 -52.64 -0.26 -18.03 16 10 C 0.16 3.36 4.55 -67.12 -0.31 3.05 16 11 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 12 C -0.17 -3.08 7.62 -25.91 -0.20 -3.28 16 13 C 0.12 2.23 4.00 -67.11 -0.27 1.96 16 14 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 15 N -0.68 -13.13 4.33 -53.86 -0.23 -13.36 16 16 C 0.57 11.18 7.81 -12.18 -0.10 11.08 16 17 O -0.55 -11.40 16.27 5.36 0.09 -11.31 16 18 C 0.08 1.38 6.75 -83.06 -0.56 0.82 16 19 C -0.12 -1.73 9.26 -38.95 -0.36 -2.09 16 20 C -0.05 -0.61 5.74 -104.64 -0.60 -1.21 16 21 C -0.11 -1.40 5.75 -104.53 -0.60 -2.00 16 22 C 0.11 1.63 10.79 -17.44 -0.19 1.44 16 23 N -0.44 -7.93 9.55 -9.73 -0.09 -8.02 16 24 C -0.08 -0.71 5.71 -28.09 -0.16 -0.87 16 25 C -0.12 -0.88 5.97 -26.68 -0.16 -1.04 16 26 C -0.12 -0.92 5.97 -26.66 -0.16 -1.08 16 27 C -0.08 -0.74 5.71 -28.14 -0.16 -0.90 16 28 C -0.18 -3.12 7.57 -25.92 -0.20 -3.32 16 29 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.39 10.37 6.37 -40.82 -0.26 10.11 16 31 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.42 8.71 7.16 -40.82 -0.29 8.42 16 34 H 0.14 2.03 7.64 -52.49 -0.40 1.63 16 35 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 36 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -32.00 366.91 -10.36 -42.36 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -6.83 Total: 17.02 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -4.26 Total: -4.73 kcal Atomic # 7 Polarization: -66.18 SS G_CDS: 0.13 Total: -66.05 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.00 -10.36 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022400429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.546 kcal (2) G-P(sol) polarization free energy of solvation -31.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds