Wall clock time and date at job start Tue Mar 31 2020 11:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00558 * 2 1 4 4 H 1.48507 * 109.46938 * 269.99851 * 3 2 1 5 5 H 1.48495 * 109.47082 * 29.99282 * 3 2 1 6 6 H 1.48501 * 109.47433 * 149.99598 * 3 2 1 7 7 C 1.38819 * 119.99592 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99909 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00187 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00387 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85309 * 26.37078 * 10 9 7 12 12 C 1.53785 * 113.61848 * 157.56930 * 10 9 7 13 13 C 1.53785 * 87.07900 * 89.20220 * 12 10 9 14 14 H 1.08998 * 113.61038 * 140.07065 * 13 12 10 15 15 N 1.46506 * 113.61181 * 270.88343 * 13 12 10 16 16 C 1.34781 * 119.99742 * 275.12094 * 15 13 12 17 17 O 1.21508 * 120.00357 * 359.72254 * 16 15 13 18 18 C 1.48163 * 119.99626 * 179.72472 * 16 15 13 19 19 C 1.39172 * 119.82258 * 179.97438 * 18 16 15 20 20 C 1.39003 * 119.25284 * 179.88453 * 19 18 16 21 21 C 1.37855 * 118.56293 * 359.94307 * 20 19 18 22 22 C 1.39126 * 119.06900 * 0.19621 * 21 20 19 23 23 N 1.31318 * 121.19937 * 359.54041 * 22 21 20 24 24 C 1.50504 * 122.48746 * 180.35175 * 21 20 19 25 25 C 1.52782 * 110.48034 * 342.27225 * 24 21 20 26 26 C 1.53317 * 108.50603 * 51.11957 * 25 24 21 27 27 C 1.50360 * 118.61370 * 179.74017 * 20 19 18 28 28 C 1.53777 * 87.08300 * 25.43286 * 13 12 10 29 29 H 0.97005 * 119.99647 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00085 * 359.97438 * 9 7 2 31 31 H 1.08995 * 113.61063 * 334.65002 * 12 10 9 32 32 H 1.09005 * 113.61516 * 203.74821 * 12 10 9 33 33 H 0.96997 * 119.99685 * 94.83916 * 15 13 12 34 34 H 1.07998 * 120.37645 * 359.85890 * 19 18 16 35 35 H 1.07998 * 119.39860 * 179.83225 * 22 21 20 36 36 H 1.09006 * 109.29840 * 221.96336 * 24 21 20 37 37 H 1.08997 * 109.30486 * 102.58409 * 24 21 20 38 38 H 1.09002 * 109.63138 * 291.41942 * 25 24 21 39 39 H 1.08996 * 109.63356 * 170.83215 * 25 24 21 40 40 H 1.09003 * 109.63508 * 170.47013 * 26 25 24 41 41 H 1.09000 * 109.80563 * 49.95433 * 26 25 24 42 42 H 1.08997 * 109.30633 * 283.02530 * 27 20 19 43 43 H 1.08999 * 109.30216 * 42.61670 * 27 20 19 44 44 H 1.08999 * 113.61535 * 89.11760 * 28 13 12 45 45 H 1.08998 * 113.61529 * 220.01788 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4478 2.6526 0.6999 6 1 3.5478 1.4400 0.7001 7 6 2.0101 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0017 11 1 3.0485 -3.5734 0.4486 12 6 1.2374 -4.8413 0.5392 13 6 0.7561 -5.0615 -0.9047 14 1 0.6945 -6.1119 -1.1889 15 7 -0.4553 -4.3092 -1.2407 16 6 -1.6680 -4.8176 -0.9447 17 8 -1.7567 -5.9020 -0.4039 18 6 -2.8929 -4.0540 -1.2790 19 6 -4.1433 -4.5826 -0.9723 20 6 -5.2846 -3.8550 -1.2890 21 6 -5.1357 -2.6275 -1.8984 22 6 -3.8546 -2.1626 -2.1781 23 7 -2.7917 -2.8670 -1.8643 24 6 -6.3096 -1.7630 -2.2725 25 6 -7.5949 -2.5886 -2.2976 26 6 -7.7050 -3.3581 -0.9761 27 6 -6.6282 -4.4423 -0.9565 28 6 2.0543 -4.3735 -1.3589 29 1 -0.4850 0.8401 -0.0004 30 1 0.3554 -2.3880 0.0005 31 1 0.4425 -4.5466 1.2243 32 1 1.8491 -5.6570 0.9247 33 1 -0.3845 -3.4435 -1.6723 34 1 -4.2260 -5.5473 -0.4940 35 1 -3.7319 -1.2028 -2.6579 36 1 -6.1392 -1.3314 -3.2589 37 1 -6.4119 -0.9591 -1.5436 38 1 -7.5620 -3.2923 -3.1294 39 1 -8.4535 -1.9263 -2.4084 40 1 -8.6901 -3.8186 -0.9013 41 1 -7.5544 -2.6770 -0.1385 42 1 -6.8770 -5.2104 -1.6888 43 1 -6.5900 -4.8902 0.0365 44 1 2.8893 -5.0613 -1.4923 45 1 1.9188 -3.7013 -2.2062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022400429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:23 Heat of formation + Delta-G solvation = -0.559288 kcal Electronic energy + Delta-G solvation = -26268.858516 eV Core-core repulsion = 22671.518773 eV Total energy + Delta-G solvation = -3597.339743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.98003 -40.94851 -39.25779 -37.68288 -35.49132 -34.16933 -33.82678 -32.20553 -31.67789 -30.44675 -26.74725 -26.39949 -25.69394 -24.95610 -23.93803 -23.65461 -22.03575 -20.51061 -20.17610 -19.27590 -18.70776 -17.70261 -17.03719 -16.66665 -16.49775 -16.38467 -16.19950 -15.83205 -15.49685 -15.41909 -14.91391 -14.78864 -14.73827 -14.47282 -14.02410 -13.59533 -13.49211 -13.28134 -13.24486 -13.12266 -12.95663 -12.77103 -12.57445 -12.15179 -11.91912 -11.84528 -11.75923 -11.73142 -11.47488 -11.31326 -11.06765 -10.89487 -10.45323 -10.36344 -10.08881 -9.80649 -8.98888 -7.89533 -5.20034 -0.37997 0.22468 1.48384 1.49671 1.57750 1.64569 2.10675 2.57396 2.82572 3.15834 3.40450 3.55427 3.63804 3.66534 3.80104 3.82424 3.87615 3.97838 4.04953 4.08633 4.25796 4.34548 4.37383 4.43300 4.59831 4.63106 4.74301 4.76183 4.82875 4.87774 4.93186 4.97044 5.01881 5.04986 5.05958 5.22702 5.23381 5.26663 5.35117 5.37901 5.46638 5.52287 5.66300 5.70462 6.30434 6.41944 6.83641 7.12862 7.36446 8.11952 8.36062 9.31918 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012277 B = 0.004082 C = 0.003204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.123260 B = 6857.487788 C = 8736.327987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.068 4.068 3 Si 0.972 3.028 4 H -0.287 1.287 5 H -0.299 1.299 6 H -0.272 1.272 7 C -0.249 4.249 8 H 0.078 0.922 9 N -0.721 5.721 10 C 0.145 3.855 11 H 0.069 0.931 12 C -0.157 4.157 13 C 0.121 3.879 14 H 0.096 0.904 15 N -0.684 5.684 16 C 0.567 3.433 17 O -0.569 6.569 18 C 0.042 3.958 19 C -0.117 4.117 20 C -0.048 4.048 21 C -0.099 4.099 22 C 0.090 3.910 23 N -0.474 5.474 24 C -0.080 4.080 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.081 4.081 28 C -0.157 4.157 29 H 0.249 0.751 30 H 0.375 0.625 31 H 0.036 0.964 32 H 0.120 0.880 33 H 0.412 0.588 34 H 0.148 0.852 35 H 0.172 0.828 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.061 0.939 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.124 0.876 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.986 -8.327 -6.001 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.261 4.261 3 Si 0.801 3.199 4 H -0.214 1.214 5 H -0.225 1.225 6 H -0.197 1.197 7 C -0.381 4.381 8 H 0.096 0.904 9 N -0.361 5.361 10 C 0.035 3.965 11 H 0.087 0.913 12 C -0.196 4.196 13 C 0.016 3.984 14 H 0.114 0.886 15 N -0.333 5.333 16 C 0.353 3.647 17 O -0.449 6.449 18 C -0.093 4.093 19 C -0.138 4.138 20 C -0.055 4.055 21 C -0.102 4.102 22 C -0.072 4.072 23 N -0.185 5.185 24 C -0.117 4.117 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.118 4.118 28 C -0.197 4.197 29 H 0.058 0.942 30 H 0.209 0.791 31 H 0.055 0.945 32 H 0.139 0.861 33 H 0.250 0.750 34 H 0.165 0.835 35 H 0.189 0.811 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.111 0.889 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.104 0.896 44 H 0.142 0.858 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.986 -8.664 -5.769 17.435 hybrid contribution -0.289 1.189 0.198 1.240 sum -14.275 -7.475 -5.571 17.050 Atomic orbital electron populations 1.69861 1.06373 1.25735 1.58738 1.25523 0.96324 1.00791 1.03477 0.85177 0.77642 0.79755 0.77326 1.21391 1.22544 1.19665 1.19649 0.91532 0.85034 1.41858 0.90436 1.42438 1.05531 1.00533 1.87563 1.21485 0.95209 0.84938 0.94873 0.91266 1.23833 0.99880 0.99882 0.96037 1.21940 0.84135 0.95657 0.96678 0.88574 1.45789 1.04734 1.23283 1.59518 1.18213 0.83650 0.84720 0.78095 1.90674 1.87408 1.22056 1.44793 1.21017 0.93752 0.93081 1.01459 1.22209 0.91341 1.01467 0.98782 1.20230 0.96435 0.93488 0.95365 1.21135 0.96872 0.95329 0.96823 1.23243 0.87367 0.99503 0.97086 1.67481 1.35702 1.05212 1.10079 1.20580 0.91012 0.96939 1.03216 1.21582 0.96719 0.99247 0.97828 1.21608 0.98709 0.97213 0.98137 1.20589 0.88953 0.99025 1.03217 1.24001 0.96124 0.99854 0.99765 0.94236 0.79143 0.94464 0.86140 0.75033 0.83460 0.81099 0.88649 0.89320 0.91223 0.89086 0.88934 0.92002 0.88440 0.89593 0.85789 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.49 13.06 21.65 0.28 -58.20 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 3 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 4 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.25 -13.89 9.97 84.04 0.84 -13.06 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 9 N -0.72 -37.12 5.02 -320.44 -1.61 -38.73 16 10 C 0.15 5.86 4.55 45.52 0.21 6.06 16 11 H 0.07 2.68 8.12 -2.38 -0.02 2.66 16 12 C -0.16 -5.68 7.62 31.12 0.24 -5.44 16 13 C 0.12 4.26 4.00 45.52 0.18 4.45 16 14 H 0.10 3.12 8.05 -2.39 -0.02 3.10 16 15 N -0.68 -27.46 4.33 -442.59 -1.92 -29.38 16 16 C 0.57 23.22 7.81 86.88 0.68 23.90 16 17 O -0.57 -24.47 16.27 -3.74 -0.06 -24.53 16 18 C 0.04 1.60 6.75 41.87 0.28 1.88 16 19 C -0.12 -3.61 9.26 22.68 0.21 -3.40 16 20 C -0.05 -1.16 5.74 -19.88 -0.11 -1.28 16 21 C -0.10 -2.41 5.75 -19.80 -0.11 -2.52 16 22 C 0.09 2.76 10.79 84.98 0.92 3.68 16 23 N -0.47 -18.13 9.55 -184.70 -1.76 -19.90 16 24 C -0.08 -1.26 5.71 29.71 0.17 -1.09 16 25 C -0.12 -1.34 5.97 30.63 0.18 -1.16 16 26 C -0.12 -1.46 5.97 30.64 0.18 -1.28 16 27 C -0.08 -1.30 5.71 29.68 0.17 -1.13 16 28 C -0.16 -5.24 7.57 31.12 0.24 -5.00 16 29 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 30 H 0.38 20.97 6.37 -92.71 -0.59 20.37 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.12 3.47 8.14 -2.38 -0.02 3.45 16 33 H 0.41 18.06 7.16 -92.71 -0.66 17.40 16 34 H 0.15 4.28 7.64 -2.91 -0.02 4.26 16 35 H 0.17 4.59 8.06 -2.91 -0.02 4.57 16 36 H 0.10 1.26 8.13 -2.38 -0.02 1.24 16 37 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.06 0.86 8.11 -2.39 -0.02 0.84 16 42 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 44 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.06 2.15 8.13 -2.39 -0.02 2.13 16 Total: -1.00 -71.73 366.91 1.45 -70.28 By element: Atomic # 1 Polarization: 51.26 SS G_CDS: -0.24 Total: 51.02 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 4.73 Total: 1.17 kcal Atomic # 7 Polarization: -141.20 SS G_CDS: -5.00 Total: -146.20 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.06 Total: -24.53 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -71.73 1.45 -70.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022400429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.717 kcal (2) G-P(sol) polarization free energy of solvation -71.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds