Wall clock time and date at job start Tue Mar 31 2020 11:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99960 * 2 1 4 4 H 1.48501 * 109.47375 * 274.57790 * 3 2 1 5 5 H 1.48504 * 109.47132 * 34.57947 * 3 2 1 6 6 H 1.48500 * 109.47255 * 154.57826 * 3 2 1 7 7 C 1.38808 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00404 * 343.33279 * 7 2 1 9 9 N 1.36941 * 120.00227 * 163.33100 * 7 2 1 10 10 C 1.47428 * 125.64860 * 322.11283 * 9 7 2 11 11 C 1.54901 * 104.83336 * 155.84603 * 10 9 7 12 12 C 1.55162 * 101.58249 * 37.01093 * 11 10 9 13 13 C 1.47025 * 125.65008 * 142.08356 * 9 7 2 14 14 H 1.09002 * 109.88182 * 300.50363 * 13 9 7 15 15 C 1.52998 * 109.88081 * 61.51323 * 13 9 7 16 16 N 1.46505 * 109.47141 * 296.33514 * 15 13 9 17 17 C 1.34773 * 120.00109 * 174.20915 * 16 15 13 18 18 O 1.21280 * 119.99955 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99731 * 180.02562 * 17 16 15 20 20 H 1.08999 * 115.55482 * 34.27827 * 19 17 16 21 21 C 1.53001 * 117.49846 * 248.60294 * 19 17 16 22 22 C 1.52997 * 60.00431 * 252.51361 * 21 19 17 23 23 H 1.09004 * 117.49617 * 107.48850 * 22 21 19 24 24 C 1.50698 * 117.50034 * 252.51147 * 22 21 19 25 25 C 1.38646 * 120.78742 * 8.33794 * 24 22 21 26 26 C 1.38213 * 119.16117 * 179.75479 * 25 24 22 27 27 N 1.31867 * 120.75940 * 0.53705 * 26 25 24 28 28 C 1.31869 * 121.72851 * 359.73404 * 27 26 25 29 29 C 1.38199 * 120.76501 * 359.97438 * 28 27 26 30 30 H 0.97003 * 120.00083 * 0.02562 * 1 2 3 31 31 H 1.08995 * 110.36321 * 274.69167 * 10 9 7 32 32 H 1.09001 * 110.36221 * 37.00638 * 10 9 7 33 33 H 1.09002 * 111.00210 * 155.08209 * 11 10 9 34 34 H 1.09000 * 111.00533 * 278.93368 * 11 10 9 35 35 H 1.08999 * 110.71821 * 206.13604 * 12 11 10 36 36 H 1.09003 * 110.87058 * 82.92965 * 12 11 10 37 37 H 1.08994 * 109.47375 * 56.33279 * 15 13 9 38 38 H 1.09004 * 109.47142 * 176.33721 * 15 13 9 39 39 H 0.97003 * 119.99627 * 354.21141 * 16 15 13 40 40 H 1.08999 * 117.49703 * 0.02562 * 21 19 17 41 41 H 1.08999 * 117.49767 * 145.00032 * 21 19 17 42 42 H 1.08003 * 120.42204 * 0.02562 * 25 24 22 43 43 H 1.08000 * 119.61874 * 180.29517 * 26 25 24 44 44 H 1.08001 * 119.61697 * 180.02562 * 28 27 26 45 45 H 1.08004 * 120.41836 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4009 2.1023 -1.3956 5 1 1.4993 2.6228 0.7946 6 1 3.5928 1.4142 0.6010 7 6 2.0102 -1.2021 0.0005 8 1 1.5043 -2.1177 0.2692 9 7 3.3365 -1.2272 -0.3396 10 6 3.9687 -0.4133 -1.3938 11 6 5.4602 -0.3243 -0.9853 12 6 5.7079 -1.7399 -0.4003 13 6 4.3659 -2.0699 0.2864 14 1 4.4298 -1.8473 1.3515 15 6 4.0232 -3.5471 0.0834 16 7 2.7667 -3.8558 0.7707 17 6 2.2049 -5.0732 0.6333 18 8 2.7398 -5.9132 -0.0589 19 6 0.9122 -5.3905 1.3398 20 1 0.2130 -4.5599 1.4364 21 6 0.9622 -6.4081 2.4812 22 6 0.3249 -6.7897 1.1436 23 1 0.8736 -7.4806 0.5036 24 6 -1.1763 -6.9141 1.0984 25 6 -1.9535 -6.5250 2.1786 26 6 -3.3277 -6.6491 2.0990 27 7 -3.8989 -7.1404 1.0168 28 6 -3.1910 -7.5256 -0.0270 29 6 -1.8127 -7.4258 -0.0221 30 1 -0.4850 0.8401 -0.0004 31 1 3.8691 -0.9034 -2.3623 32 1 3.5235 0.5812 -1.4234 33 1 6.0932 -0.1444 -1.8542 34 1 5.6125 0.4439 -0.2271 35 1 6.5189 -1.7198 0.3277 36 1 5.9215 -2.4561 -1.1938 37 1 3.9146 -3.7519 -0.9816 38 1 4.8225 -4.1651 0.4926 39 1 2.3391 -3.1840 1.3246 40 1 1.9302 -6.8478 2.7213 41 1 0.2960 -6.2470 3.3287 42 1 -1.4912 -6.1258 3.0694 43 1 -3.9405 -6.3437 2.9342 44 1 -3.6944 -7.9228 -0.8961 45 1 -1.2384 -7.7433 -0.8799 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027890607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:36 Heat of formation + Delta-G solvation = 52.085973 kcal Electronic energy + Delta-G solvation = -25969.210438 eV Core-core repulsion = 22374.153565 eV Total energy + Delta-G solvation = -3595.056873 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.47849 -39.44860 -38.09144 -36.56392 -34.00420 -32.71851 -32.00234 -31.20119 -30.03687 -29.52268 -25.69842 -24.67183 -24.23985 -23.42427 -22.70296 -21.03033 -20.72268 -19.90320 -19.30614 -17.63320 -17.09542 -16.38191 -16.22595 -15.96003 -15.58808 -15.36299 -14.86318 -14.52148 -14.07007 -13.94209 -13.84519 -13.57878 -13.40593 -13.05707 -12.56821 -12.39107 -12.31911 -12.04772 -11.99700 -11.62958 -11.39741 -11.31937 -11.12180 -10.97021 -10.73583 -10.55695 -10.49759 -10.23539 -9.91806 -9.64226 -9.54163 -9.50347 -9.19997 -9.17893 -8.66736 -8.41647 -6.87927 -6.09487 -3.57121 1.10922 1.15500 2.85165 3.25254 3.38893 3.43945 3.55828 3.71849 4.04320 4.41554 4.43071 4.47435 4.66795 4.78710 4.86457 4.92861 5.04241 5.07777 5.13360 5.20378 5.28633 5.38854 5.39440 5.48722 5.53943 5.62151 5.76340 5.79418 5.87490 5.89677 5.98506 6.04519 6.06511 6.08132 6.21856 6.28709 6.35088 6.36044 6.54413 6.66099 6.80117 6.81317 7.01402 7.81676 7.93847 8.07951 8.22690 8.67809 8.73388 9.54718 10.15090 11.04305 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.003545 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.286121 B = 7896.104561 C = 9206.873795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.037 3.963 3 Si 0.891 3.109 4 H -0.287 1.287 5 H -0.303 1.303 6 H -0.267 1.267 7 C -0.259 4.259 8 H 0.089 0.911 9 N -0.601 5.601 10 C 0.117 3.883 11 C -0.136 4.136 12 C -0.121 4.121 13 C 0.142 3.858 14 H 0.048 0.952 15 C 0.117 3.883 16 N -0.700 5.700 17 C 0.540 3.460 18 O -0.561 6.561 19 C -0.165 4.165 20 H 0.130 0.870 21 C -0.143 4.143 22 C -0.094 4.094 23 H 0.129 0.871 24 C -0.003 4.003 25 C -0.172 4.172 26 C 0.100 3.900 27 N -0.492 5.492 28 C 0.099 3.901 29 C -0.163 4.163 30 H 0.265 0.735 31 H 0.031 0.969 32 H 0.041 0.959 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.414 0.586 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.136 0.864 43 H 0.155 0.845 44 H 0.155 0.845 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.779 -10.845 4.561 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.165 4.165 3 Si 0.722 3.278 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.192 1.192 7 C -0.387 4.387 8 H 0.107 0.893 9 N -0.327 5.327 10 C -0.007 4.007 11 C -0.174 4.174 12 C -0.159 4.159 13 C 0.035 3.965 14 H 0.066 0.934 15 C -0.009 4.009 16 N -0.352 5.352 17 C 0.326 3.674 18 O -0.441 6.441 19 C -0.186 4.186 20 H 0.148 0.852 21 C -0.180 4.180 22 C -0.112 4.112 23 H 0.147 0.853 24 C -0.011 4.011 25 C -0.192 4.192 26 C -0.056 4.056 27 N -0.201 5.201 28 C -0.058 4.058 29 C -0.183 4.183 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.253 0.747 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.154 0.846 43 H 0.172 0.828 44 H 0.172 0.828 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.999 -11.374 4.080 12.248 hybrid contribution 1.036 1.614 0.080 1.919 sum 3.035 -9.759 4.160 11.035 Atomic orbital electron populations 1.69799 1.05850 1.26959 1.51508 1.25492 0.95159 0.98093 0.97710 0.86680 0.80164 0.83945 0.77049 1.21526 1.23137 1.19238 1.18631 0.81965 0.93857 1.44267 0.89337 1.44669 1.04651 1.47267 1.36151 1.21888 0.90858 0.95434 0.92507 1.22780 0.97544 0.96855 1.00265 1.22481 0.96433 0.97148 0.99878 1.21290 0.88956 0.89580 0.96633 0.93434 1.21923 0.84613 0.97057 0.97315 1.46134 1.25267 1.13938 1.49855 1.19440 0.84706 0.82333 0.80955 1.90630 1.64438 1.48062 1.41002 1.22394 0.98430 0.94478 1.03334 0.85170 1.23100 1.02915 1.00598 0.91434 1.21048 0.90598 0.98135 1.01436 0.85267 1.19547 0.93818 0.94339 0.93407 1.22074 0.95223 1.02144 0.99759 1.22725 0.92347 0.94761 0.95795 1.67653 1.41138 1.10634 1.00694 1.22733 0.90932 0.95696 0.96393 1.22017 0.96098 1.01352 0.98859 0.92511 0.95129 0.94096 0.91542 0.91581 0.91432 0.91278 0.91745 0.92940 0.74651 0.87682 0.87462 0.84602 0.82760 0.82757 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.18 13.97 55.49 0.78 -25.41 16 2 C 0.04 1.01 5.46 -17.43 -0.10 0.91 16 3 Si 0.89 21.60 24.84 -169.99 -4.22 17.37 16 4 H -0.29 -6.95 6.85 56.52 0.39 -6.56 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.27 -6.25 7.00 56.52 0.40 -5.86 16 7 C -0.26 -6.67 9.43 -15.06 -0.14 -6.81 16 8 H 0.09 2.34 5.56 -52.49 -0.29 2.05 16 9 N -0.60 -13.34 2.64 -162.58 -0.43 -13.77 16 10 C 0.12 2.42 6.22 -2.53 -0.02 2.41 16 11 C -0.14 -2.21 7.08 -24.58 -0.17 -2.39 16 12 C -0.12 -1.80 6.48 -24.89 -0.16 -1.96 16 13 C 0.14 2.57 3.31 -66.95 -0.22 2.35 16 14 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 15 C 0.12 2.06 5.17 -4.04 -0.02 2.04 16 16 N -0.70 -12.63 4.35 -60.29 -0.26 -12.89 16 17 C 0.54 9.64 7.61 -10.99 -0.08 9.55 16 18 O -0.56 -11.43 16.25 5.56 0.09 -11.34 16 19 C -0.17 -2.41 5.84 -91.77 -0.54 -2.94 16 20 H 0.13 1.98 8.14 -51.93 -0.42 1.56 16 21 C -0.14 -1.61 9.59 -26.73 -0.26 -1.86 16 22 C -0.09 -1.21 5.59 -91.77 -0.51 -1.72 16 23 H 0.13 1.77 7.67 -51.93 -0.40 1.37 16 24 C 0.00 -0.04 5.64 -104.32 -0.59 -0.63 16 25 C -0.17 -1.99 9.39 -39.44 -0.37 -2.36 16 26 C 0.10 1.18 11.18 -17.55 -0.20 0.99 16 27 N -0.49 -6.55 10.36 -13.25 -0.14 -6.68 16 28 C 0.10 1.19 11.18 -17.55 -0.20 0.99 16 29 C -0.16 -1.98 9.84 -39.44 -0.39 -2.37 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.92 3.38 -51.93 -0.18 0.74 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 37 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.41 7.65 6.26 -40.82 -0.26 7.39 16 40 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.11 0.97 6.25 -51.93 -0.32 0.65 16 42 H 0.14 1.27 6.16 -52.48 -0.32 0.95 16 43 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.16 1.42 8.06 -52.49 -0.42 0.99 16 45 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 LS Contribution 361.21 15.07 5.44 5.44 Total: -1.00 -32.01 361.21 -9.10 -41.11 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -6.40 Total: 9.97 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.96 Total: -3.80 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.05 Total: -58.76 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.22 Total: 17.37 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.01 -9.10 -41.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027890607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.196 kcal (2) G-P(sol) polarization free energy of solvation -32.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds