Wall clock time and date at job start Tue Mar 31 2020 11:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99926 * 2 1 4 4 H 1.48494 * 109.47653 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 120.00889 * 3 2 1 6 6 H 1.48504 * 109.47064 * 240.00231 * 3 2 1 7 7 C 1.38812 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00033 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.65105 * 346.30604 * 9 7 2 11 11 C 1.54911 * 104.83528 * 204.09577 * 10 9 7 12 12 C 1.55153 * 101.58094 * 322.98950 * 11 10 9 13 13 C 1.47026 * 125.64583 * 166.00382 * 9 7 2 14 14 H 1.08999 * 109.88554 * 59.55655 * 13 9 7 15 15 C 1.53000 * 109.88126 * 298.38754 * 13 9 7 16 16 N 1.46499 * 109.46871 * 175.48084 * 15 13 9 17 17 C 1.34783 * 119.99816 * 184.66989 * 16 15 13 18 18 O 1.21280 * 119.99557 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00004 * 179.97438 * 17 16 15 20 20 H 1.09002 * 115.54880 * 34.41769 * 19 17 16 21 21 C 1.53000 * 117.50136 * 248.74264 * 19 17 16 22 22 C 1.53002 * 117.49916 * 180.02562 * 19 17 16 23 23 H 1.08997 * 117.49572 * 359.97438 * 22 19 17 24 24 C 1.50695 * 117.49817 * 214.97919 * 22 19 17 25 25 C 1.38652 * 120.79324 * 299.71705 * 24 22 19 26 26 C 1.38201 * 119.16268 * 179.75597 * 25 24 22 27 27 N 1.31866 * 120.76469 * 0.53845 * 26 25 24 28 28 C 1.31870 * 121.72786 * 359.73968 * 27 26 25 29 29 C 1.38208 * 120.76056 * 359.97352 * 28 27 26 30 30 H 0.97003 * 119.99807 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.36368 * 322.93456 * 10 9 7 32 32 H 1.09000 * 110.36820 * 85.14317 * 10 9 7 33 33 H 1.09001 * 111.00432 * 81.06547 * 11 10 9 34 34 H 1.09000 * 111.00270 * 204.87351 * 11 10 9 35 35 H 1.09000 * 110.72052 * 153.86598 * 12 11 10 36 36 H 1.09002 * 110.72196 * 276.96445 * 12 11 10 37 37 H 1.08999 * 109.47189 * 295.47392 * 15 13 9 38 38 H 1.09000 * 109.47195 * 55.48010 * 15 13 9 39 39 H 0.96997 * 120.00110 * 4.66097 * 16 15 13 40 40 H 1.09000 * 117.49339 * 0.02562 * 21 19 17 41 41 H 1.08999 * 117.49880 * 145.01623 * 21 19 17 42 42 H 1.08001 * 120.41457 * 0.02562 * 25 24 22 43 43 H 1.08005 * 119.61732 * 180.25565 * 26 25 24 44 44 H 1.07999 * 119.62449 * 180.02562 * 28 27 26 45 45 H 1.08009 * 120.41482 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6963 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1119 -2.5502 0.2836 11 6 -0.2582 -4.0154 0.7650 12 6 0.7661 -4.7454 -0.1433 13 6 1.9010 -3.7097 -0.2900 14 1 2.6968 -3.9314 0.4210 15 6 2.4519 -3.7360 -1.7171 16 7 3.1181 -5.0180 -1.9597 17 6 3.7639 -5.2323 -3.1232 18 8 3.7930 -4.3640 -3.9694 19 6 4.4497 -6.5509 -3.3726 20 1 3.9601 -7.4243 -2.9418 21 6 5.9787 -6.5528 -3.4264 22 6 5.1659 -6.7324 -4.7124 23 1 5.1407 -5.8983 -5.4135 24 6 5.1418 -8.1050 -5.3339 25 6 5.6869 -9.1940 -4.6711 26 6 5.6418 -10.4386 -5.2703 27 7 5.0984 -10.5944 -6.4616 28 6 4.5756 -9.5806 -7.1233 29 6 4.5791 -8.3078 -6.5848 30 1 -0.4850 0.8401 0.0004 31 1 -0.4238 -1.8603 1.0677 32 1 -0.6982 -2.3858 -0.6205 33 1 0.0143 -4.1103 1.8161 34 1 -1.2688 -4.3848 0.5907 35 1 1.1295 -5.6536 0.3376 36 1 0.3264 -4.9743 -1.1141 37 1 1.6325 -3.6127 -2.4253 38 1 3.1681 -2.9244 -1.8452 39 1 3.0946 -5.7125 -1.2830 40 1 6.4886 -5.6005 -3.2810 41 1 6.4951 -7.4277 -3.0313 42 1 6.1371 -9.0719 -3.6971 43 1 6.0605 -11.2927 -4.7587 44 1 4.1389 -9.7470 -8.0970 45 1 4.1497 -7.4814 -7.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027890608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:39 Heat of formation + Delta-G solvation = 45.184314 kcal Electronic energy + Delta-G solvation = -25239.677704 eV Core-core repulsion = 21644.321552 eV Total energy + Delta-G solvation = -3595.356152 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76125 -39.66901 -37.86762 -36.77290 -34.26898 -32.51807 -32.27139 -31.48402 -29.75164 -28.80501 -25.65707 -24.85281 -24.44986 -23.66407 -22.88422 -21.16323 -20.41261 -19.97299 -19.41289 -17.85093 -17.05596 -16.64894 -16.29856 -15.92000 -15.75366 -15.07980 -14.90887 -14.50965 -14.25791 -14.14756 -13.92629 -13.81638 -13.61365 -13.02366 -12.60286 -12.30762 -12.13983 -11.92569 -11.90946 -11.80085 -11.44725 -11.31981 -10.97486 -10.82797 -10.79902 -10.25328 -10.15987 -9.97468 -9.88979 -9.80411 -9.77882 -9.71794 -9.47141 -9.46552 -8.74622 -8.59594 -6.87863 -5.79178 -3.16077 0.81912 0.86450 2.57778 3.22638 3.38808 3.43584 3.43948 3.45644 3.75818 4.14578 4.16532 4.37505 4.46337 4.48988 4.62854 4.75957 4.85422 4.92094 4.98584 5.26141 5.30214 5.35985 5.36246 5.47097 5.49715 5.58906 5.61210 5.64969 5.77300 5.79808 6.00545 6.08468 6.10132 6.20087 6.37874 6.42450 6.50442 6.58391 6.66603 6.76921 7.01756 7.48829 7.57201 7.66156 7.73709 7.76362 8.22717 8.42263 9.14542 9.75075 10.41945 11.32397 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.002458 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.991724 B =11388.446633 C =12064.821182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.911 3.089 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.235 4.235 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.109 3.891 16 N -0.717 5.717 17 C 0.535 3.465 18 O -0.541 6.541 19 C -0.169 4.169 20 H 0.124 0.876 21 C -0.141 4.141 22 C -0.094 4.094 23 H 0.132 0.868 24 C -0.005 4.005 25 C -0.175 4.175 26 C 0.100 3.900 27 N -0.491 5.491 28 C 0.100 3.900 29 C -0.163 4.163 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.397 0.603 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.136 0.864 43 H 0.155 0.845 44 H 0.156 0.844 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.987 -19.779 -6.390 22.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.046 3.954 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.016 4.016 16 N -0.367 5.367 17 C 0.320 3.680 18 O -0.419 6.419 19 C -0.191 4.191 20 H 0.142 0.858 21 C -0.178 4.178 22 C -0.113 4.113 23 H 0.150 0.850 24 C -0.013 4.013 25 C -0.194 4.194 26 C -0.057 4.057 27 N -0.201 5.201 28 C -0.056 4.056 29 C -0.183 4.183 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.230 0.770 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.154 0.846 43 H 0.173 0.827 44 H 0.174 0.826 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.886 -19.685 -7.340 22.811 hybrid contribution 0.343 1.432 0.624 1.599 sum 9.230 -18.254 -6.716 21.529 Atomic orbital electron populations 1.69928 1.05017 1.25458 1.55781 1.24909 0.95694 0.97885 1.01356 0.86219 0.78600 0.83030 0.78045 1.21528 1.21050 1.20932 1.18937 0.90375 0.82194 1.44831 0.90691 1.44496 1.05915 1.00852 1.80025 1.21479 0.84656 0.90301 0.98924 1.23000 0.97461 0.99581 0.98652 1.22622 0.97141 0.96983 0.99785 1.21134 0.94455 0.88090 0.91983 0.94445 1.22276 0.96694 0.83346 0.99319 1.46062 1.54346 1.18677 1.17612 1.19512 0.78752 0.87482 0.82269 1.90716 1.60782 1.45601 1.44786 1.22384 0.96381 0.98330 1.01958 0.85782 1.23165 0.91051 1.04483 0.99127 1.21119 1.04030 0.95285 0.90864 0.85005 1.19565 0.94274 0.93626 0.93805 1.22077 1.01970 0.93494 1.01891 1.22746 0.95224 0.96471 0.91257 1.67674 1.09414 1.34597 1.08375 1.22781 0.95265 0.88209 0.99381 1.22066 1.00878 0.99213 0.96150 0.93517 0.90743 0.95678 0.92273 0.92322 0.92386 0.91871 0.91994 0.91070 0.77015 0.87317 0.87360 0.84600 0.82729 0.82624 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.49 10.54 55.49 0.58 -25.90 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 3 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.24 -6.39 9.72 -15.06 -0.15 -6.54 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.59 -14.43 3.13 -162.56 -0.51 -14.94 16 10 C 0.17 4.03 5.43 -2.53 -0.01 4.02 16 11 C -0.15 -2.66 7.09 -24.58 -0.17 -2.83 16 12 C -0.13 -2.05 6.08 -24.89 -0.15 -2.20 16 13 C 0.15 2.93 3.22 -66.94 -0.22 2.71 16 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 15 C 0.11 2.05 5.10 -4.04 -0.02 2.03 16 16 N -0.72 -10.32 5.41 -60.29 -0.33 -10.64 16 17 C 0.53 7.94 7.61 -10.98 -0.08 7.85 16 18 O -0.54 -10.45 16.26 5.56 0.09 -10.36 16 19 C -0.17 -1.73 5.83 -91.77 -0.54 -2.26 16 20 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 21 C -0.14 -1.19 9.60 -26.64 -0.26 -1.45 16 22 C -0.09 -0.93 5.60 -91.68 -0.51 -1.45 16 23 H 0.13 1.51 7.67 -51.93 -0.40 1.11 16 24 C 0.00 -0.04 5.64 -104.32 -0.59 -0.63 16 25 C -0.17 -1.36 9.39 -39.44 -0.37 -1.73 16 26 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 27 N -0.49 -4.94 10.36 -13.25 -0.14 -5.08 16 28 C 0.10 0.88 11.18 -17.55 -0.20 0.69 16 29 C -0.16 -1.45 9.84 -39.44 -0.39 -1.84 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.07 1.95 6.86 -51.93 -0.36 1.60 16 32 H 0.03 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 1.01 7.78 -51.93 -0.40 0.60 16 37 H 0.06 1.30 8.04 -51.93 -0.42 0.89 16 38 H 0.07 1.56 7.86 -51.93 -0.41 1.15 16 39 H 0.40 4.43 8.25 -40.82 -0.34 4.09 16 40 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.11 0.64 6.25 -51.93 -0.32 0.32 16 42 H 0.14 0.75 6.16 -52.49 -0.32 0.43 16 43 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 45 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -33.07 370.65 -10.42 -43.48 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.74 Total: 4.00 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -3.94 Total: -3.13 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.39 Total: -56.56 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.07 -10.42 -43.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027890608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.669 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds