Wall clock time and date at job start Tue Mar 31 2020 11:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99926 * 2 1 4 4 H 1.48494 * 109.47653 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.46910 * 120.00889 * 3 2 1 6 6 H 1.48504 * 109.47064 * 240.00231 * 3 2 1 7 7 C 1.38812 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00033 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.65105 * 346.30604 * 9 7 2 11 11 C 1.54911 * 104.83528 * 204.09577 * 10 9 7 12 12 C 1.55153 * 101.58094 * 322.98950 * 11 10 9 13 13 C 1.47026 * 125.64583 * 166.00382 * 9 7 2 14 14 H 1.08999 * 109.88554 * 59.55655 * 13 9 7 15 15 C 1.53000 * 109.88126 * 298.38754 * 13 9 7 16 16 N 1.46499 * 109.46871 * 175.48084 * 15 13 9 17 17 C 1.34783 * 119.99816 * 184.66989 * 16 15 13 18 18 O 1.21280 * 119.99557 * 359.97438 * 17 16 15 19 19 C 1.50698 * 120.00004 * 179.97438 * 17 16 15 20 20 H 1.09002 * 115.54880 * 34.41769 * 19 17 16 21 21 C 1.53000 * 117.50136 * 248.74264 * 19 17 16 22 22 C 1.53002 * 117.49916 * 180.02562 * 19 17 16 23 23 H 1.08997 * 117.49572 * 359.97438 * 22 19 17 24 24 C 1.50695 * 117.49817 * 214.97919 * 22 19 17 25 25 C 1.38652 * 120.79324 * 299.71705 * 24 22 19 26 26 C 1.38201 * 119.16268 * 179.75597 * 25 24 22 27 27 N 1.31866 * 120.76469 * 0.53845 * 26 25 24 28 28 C 1.31870 * 121.72786 * 359.73968 * 27 26 25 29 29 C 1.38208 * 120.76056 * 359.97352 * 28 27 26 30 30 H 0.97003 * 119.99807 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.36368 * 322.93456 * 10 9 7 32 32 H 1.09000 * 110.36820 * 85.14317 * 10 9 7 33 33 H 1.09001 * 111.00432 * 81.06547 * 11 10 9 34 34 H 1.09000 * 111.00270 * 204.87351 * 11 10 9 35 35 H 1.09000 * 110.72052 * 153.86598 * 12 11 10 36 36 H 1.09002 * 110.72196 * 276.96445 * 12 11 10 37 37 H 1.08999 * 109.47189 * 295.47392 * 15 13 9 38 38 H 1.09000 * 109.47195 * 55.48010 * 15 13 9 39 39 H 0.96997 * 120.00110 * 4.66097 * 16 15 13 40 40 H 1.09000 * 117.49339 * 0.02562 * 21 19 17 41 41 H 1.08999 * 117.49880 * 145.01623 * 21 19 17 42 42 H 1.08001 * 120.41457 * 0.02562 * 25 24 22 43 43 H 1.08005 * 119.61732 * 180.25565 * 26 25 24 44 44 H 1.07999 * 119.62449 * 180.02562 * 28 27 26 45 45 H 1.08009 * 120.41482 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1041 1.6963 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1119 -2.5502 0.2836 11 6 -0.2582 -4.0154 0.7650 12 6 0.7661 -4.7454 -0.1433 13 6 1.9010 -3.7097 -0.2900 14 1 2.6968 -3.9314 0.4210 15 6 2.4519 -3.7360 -1.7171 16 7 3.1181 -5.0180 -1.9597 17 6 3.7639 -5.2323 -3.1232 18 8 3.7930 -4.3640 -3.9694 19 6 4.4497 -6.5509 -3.3726 20 1 3.9601 -7.4243 -2.9418 21 6 5.9787 -6.5528 -3.4264 22 6 5.1659 -6.7324 -4.7124 23 1 5.1407 -5.8983 -5.4135 24 6 5.1418 -8.1050 -5.3339 25 6 5.6869 -9.1940 -4.6711 26 6 5.6418 -10.4386 -5.2703 27 7 5.0984 -10.5944 -6.4616 28 6 4.5756 -9.5806 -7.1233 29 6 4.5791 -8.3078 -6.5848 30 1 -0.4850 0.8401 0.0004 31 1 -0.4238 -1.8603 1.0677 32 1 -0.6982 -2.3858 -0.6205 33 1 0.0143 -4.1103 1.8161 34 1 -1.2688 -4.3848 0.5907 35 1 1.1295 -5.6536 0.3376 36 1 0.3264 -4.9743 -1.1141 37 1 1.6325 -3.6127 -2.4253 38 1 3.1681 -2.9244 -1.8452 39 1 3.0946 -5.7125 -1.2830 40 1 6.4886 -5.6005 -3.2810 41 1 6.4951 -7.4277 -3.0313 42 1 6.1371 -9.0719 -3.6971 43 1 6.0605 -11.2927 -4.7587 44 1 4.1389 -9.7470 -8.0970 45 1 4.1497 -7.4814 -7.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027890608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:38 Heat of formation + Delta-G solvation = 23.897808 kcal Electronic energy + Delta-G solvation = -25240.600756 eV Core-core repulsion = 21644.321552 eV Total energy + Delta-G solvation = -3596.279204 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53496 -40.72696 -39.39268 -37.74872 -35.75223 -34.41540 -32.96615 -32.07955 -31.46480 -30.46512 -27.02390 -26.34670 -25.47869 -24.51928 -23.91990 -22.10003 -21.83605 -21.31229 -20.88419 -18.98265 -18.45926 -17.73454 -17.31917 -17.05472 -16.64873 -16.38740 -16.31877 -15.97223 -15.71492 -15.05550 -14.95260 -14.80505 -14.51620 -14.47292 -13.97490 -13.66634 -13.54594 -13.42733 -13.03701 -12.95335 -12.88579 -12.67901 -12.55521 -12.11480 -12.07044 -11.86259 -11.70012 -11.61357 -11.47942 -11.40518 -10.99258 -10.69788 -10.42375 -10.25565 -10.10169 -10.06190 -8.88093 -7.89998 -5.27630 0.20965 0.23022 1.42482 1.45829 1.47311 1.51466 2.09479 2.47938 2.68139 3.04077 3.28938 3.38218 3.59611 3.63066 3.72195 3.78339 3.89074 3.96371 3.98765 4.10657 4.19523 4.23656 4.26152 4.29199 4.42539 4.53983 4.63796 4.72074 4.78294 4.91367 4.94432 4.95386 4.98206 5.00571 5.13975 5.14100 5.21269 5.35671 5.43980 5.45540 5.56270 5.65681 5.77323 5.79711 6.21661 6.58267 7.05557 7.07311 7.26444 7.74757 8.40100 9.20309 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.002458 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.991724 B =11388.446633 C =12064.821182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.971 3.029 4 H -0.293 1.293 5 H -0.273 1.273 6 H -0.283 1.283 7 C -0.241 4.241 8 H 0.076 0.924 9 N -0.611 5.611 10 C 0.172 3.828 11 C -0.133 4.133 12 C -0.113 4.113 13 C 0.148 3.852 14 H 0.053 0.947 15 C 0.129 3.871 16 N -0.701 5.701 17 C 0.530 3.470 18 O -0.594 6.594 19 C -0.167 4.167 20 H 0.156 0.844 21 C -0.120 4.120 22 C -0.099 4.099 23 H 0.106 0.894 24 C -0.014 4.014 25 C -0.167 4.167 26 C 0.093 3.907 27 N -0.517 5.517 28 C 0.091 3.909 29 C -0.177 4.177 30 H 0.248 0.752 31 H 0.037 0.963 32 H -0.010 1.010 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.033 0.967 38 H 0.032 0.968 39 H 0.418 0.582 40 H 0.098 0.902 41 H 0.146 0.854 42 H 0.165 0.835 43 H 0.181 0.819 44 H 0.172 0.828 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.607 -23.138 -5.162 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.800 3.200 4 H -0.219 1.219 5 H -0.198 1.198 6 H -0.210 1.210 7 C -0.370 4.370 8 H 0.094 0.906 9 N -0.336 5.336 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.151 4.151 13 C 0.041 3.959 14 H 0.070 0.930 15 C 0.002 3.998 16 N -0.353 5.353 17 C 0.318 3.682 18 O -0.475 6.475 19 C -0.188 4.188 20 H 0.174 0.826 21 C -0.157 4.157 22 C -0.118 4.118 23 H 0.124 0.876 24 C -0.022 4.022 25 C -0.186 4.186 26 C -0.064 4.064 27 N -0.227 5.227 28 C -0.065 4.065 29 C -0.196 4.196 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.008 0.992 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.255 0.745 40 H 0.116 0.884 41 H 0.164 0.836 42 H 0.183 0.817 43 H 0.198 0.802 44 H 0.189 0.811 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.532 -23.111 -6.089 26.117 hybrid contribution -0.113 2.440 0.198 2.451 sum 10.418 -20.670 -5.891 23.886 Atomic orbital electron populations 1.70135 1.06250 1.25466 1.57488 1.25680 0.96536 1.01010 1.02181 0.85264 0.77352 0.79240 0.78183 1.21882 1.19824 1.20958 1.19255 0.90714 0.83678 1.43352 0.90641 1.44765 1.06391 1.02039 1.80397 1.21298 0.83978 0.93692 0.96356 1.22865 0.99610 0.95209 0.99479 1.22617 0.95025 0.97394 1.00051 1.21349 0.96056 0.86688 0.91814 0.92978 1.21681 0.94963 0.84557 0.98555 1.45770 1.53697 1.17436 1.18392 1.20359 0.77928 0.88680 0.81237 1.90700 1.62540 1.47879 1.46427 1.22322 0.97484 0.96168 1.02833 0.82623 1.23328 0.89580 1.05537 0.97255 1.20993 1.04888 0.95160 0.90775 0.87551 1.19585 0.95050 0.93521 0.94050 1.22325 1.01008 0.92564 1.02741 1.23247 0.94646 0.97673 0.90812 1.67703 1.10268 1.35204 1.09504 1.23054 0.95322 0.88004 1.00116 1.22206 1.01313 0.99475 0.96642 0.94289 0.94409 0.99197 0.91055 0.89915 0.87411 0.91636 0.94880 0.94905 0.74488 0.88386 0.83629 0.81720 0.80160 0.81086 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.16 10.54 21.65 0.23 -56.93 16 2 C -0.06 -3.46 5.47 84.86 0.46 -3.00 16 3 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 4 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 6 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 7 C -0.24 -13.45 9.72 84.03 0.82 -12.63 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.61 -30.51 3.13 -668.22 -2.09 -32.60 16 10 C 0.17 8.29 5.43 86.86 0.47 8.77 16 11 C -0.13 -4.48 7.09 31.99 0.23 -4.25 16 12 C -0.11 -3.27 6.08 31.79 0.19 -3.07 16 13 C 0.15 5.53 3.22 45.35 0.15 5.68 16 14 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 15 C 0.13 4.93 5.10 86.38 0.44 5.37 16 16 N -0.70 -19.04 5.41 -463.06 -2.50 -21.54 16 17 C 0.53 15.28 7.61 87.66 0.67 15.95 16 18 O -0.59 -23.66 16.26 -3.03 -0.05 -23.71 16 19 C -0.17 -2.96 5.83 -11.54 -0.07 -3.03 16 20 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 21 C -0.12 -1.64 9.60 30.66 0.29 -1.35 16 22 C -0.10 -1.81 5.60 -11.48 -0.06 -1.87 16 23 H 0.11 2.50 7.67 -2.39 -0.02 2.48 16 24 C -0.01 -0.23 5.64 -19.67 -0.11 -0.34 16 25 C -0.17 -1.99 9.39 22.36 0.21 -1.78 16 26 C 0.09 1.25 11.18 84.68 0.95 2.19 16 27 N -0.52 -9.46 10.36 -195.84 -2.03 -11.49 16 28 C 0.09 1.51 11.18 84.68 0.95 2.46 16 29 C -0.18 -3.00 9.84 22.36 0.22 -2.78 16 30 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 31 H 0.04 2.07 6.86 -2.39 -0.02 2.05 16 32 H -0.01 -0.54 8.08 -2.39 -0.02 -0.56 16 33 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 34 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 1.90 7.78 -2.39 -0.02 1.88 16 37 H 0.03 1.44 8.04 -2.39 -0.02 1.42 16 38 H 0.03 1.49 7.86 -2.39 -0.02 1.47 16 39 H 0.42 7.77 8.25 -92.71 -0.76 7.00 16 40 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.15 0.92 6.25 -2.39 -0.01 0.91 16 42 H 0.17 0.90 6.16 -2.91 -0.02 0.89 16 43 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 45 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -77.91 370.65 1.62 -76.29 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.23 Total: 15.12 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.80 Total: 6.32 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -6.39 Total: -122.56 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -77.91 1.62 -76.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027890608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.190 kcal (2) G-P(sol) polarization free energy of solvation -77.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds