Wall clock time and date at job start Tue Mar 31 2020 10:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99859 * 2 1 4 4 H 1.48499 * 109.47739 * 270.00511 * 3 2 1 5 5 H 1.48504 * 109.47328 * 30.00541 * 3 2 1 6 6 H 1.48504 * 109.47186 * 150.00059 * 3 2 1 7 7 C 1.38805 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00121 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.64662 * 20.37805 * 9 7 2 11 11 C 1.54914 * 104.83426 * 155.88974 * 10 9 7 12 12 C 1.55155 * 101.57843 * 37.00590 * 11 10 9 13 13 C 1.47019 * 125.65030 * 200.39477 * 9 7 2 14 14 H 1.09004 * 110.01452 * 300.53138 * 13 9 7 15 15 C 1.53005 * 109.88312 * 61.62394 * 13 9 7 16 16 N 1.46488 * 109.47302 * 181.62678 * 15 13 9 17 17 C 1.34784 * 119.99921 * 185.16332 * 16 15 13 18 18 O 1.21547 * 119.99893 * 359.97438 * 17 16 15 19 19 C 1.47845 * 120.00025 * 180.02562 * 17 16 15 20 20 C 1.40021 * 120.55631 * 353.97564 * 19 17 16 21 21 C 1.38362 * 118.28710 * 179.97438 * 20 19 17 22 22 C 1.38352 * 119.30035 * 359.97438 * 21 20 19 23 23 N 1.31923 * 121.08006 * 359.97438 * 22 21 20 24 24 C 1.31692 * 121.88050 * 359.76369 * 23 22 21 25 25 C 1.50700 * 119.71755 * 180.25098 * 24 23 22 26 26 C 1.52999 * 117.49867 * 358.92236 * 25 24 23 27 27 C 1.53000 * 117.49746 * 290.26226 * 25 24 23 28 28 H 0.96996 * 120.00078 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.36935 * 37.05111 * 10 9 7 30 30 H 1.09003 * 110.46007 * 274.77544 * 10 9 7 31 31 H 1.08997 * 111.00316 * 278.93621 * 11 10 9 32 32 H 1.08999 * 111.00660 * 155.07828 * 11 10 9 33 33 H 1.08998 * 110.72172 * 206.13426 * 12 11 10 34 34 H 1.08997 * 110.71859 * 82.86603 * 12 11 10 35 35 H 1.08999 * 109.47104 * 301.62846 * 15 13 9 36 36 H 1.08997 * 109.46777 * 61.62337 * 15 13 9 37 37 H 0.97001 * 120.00340 * 5.15937 * 16 15 13 38 38 H 1.07999 * 120.85963 * 359.95167 * 20 19 17 39 39 H 1.08000 * 120.34815 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.45672 * 180.02562 * 22 21 20 41 41 H 1.09003 * 115.55169 * 144.59190 * 25 24 23 42 42 H 1.08997 * 117.49816 * 0.02562 * 26 25 24 43 43 H 1.09007 * 117.49991 * 145.02024 * 26 25 24 44 44 H 1.09001 * 117.50194 * 214.97891 * 27 25 24 45 45 H 1.08998 * 117.49751 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.0767 -2.5705 -0.4172 11 6 -0.1782 -4.0613 -0.8258 12 6 0.7482 -4.7349 0.2209 13 6 1.8671 -3.6901 0.4153 14 1 2.7281 -3.9500 -0.2007 15 6 2.2786 -3.6362 1.8880 16 7 2.8523 -4.9251 2.2822 17 6 3.1914 -5.1469 3.5677 18 8 3.0216 -4.2773 4.3997 19 6 3.7710 -6.4476 3.9655 20 6 3.8569 -7.4998 3.0456 21 6 4.4082 -8.6965 3.4679 22 6 4.8530 -8.8140 4.7727 23 7 4.7601 -7.8049 5.6174 24 6 4.2480 -6.6449 5.2616 25 6 4.1708 -5.5231 6.2649 26 6 4.6792 -5.8049 7.6802 27 6 3.1767 -5.6741 7.4181 28 1 -0.4850 0.8400 0.0004 29 1 -0.3067 -1.9278 -1.2670 30 1 -0.7513 -2.3576 0.4121 31 1 0.1978 -4.2157 -1.8371 32 1 -1.2020 -4.4234 -0.7317 33 1 1.1553 -5.6681 -0.1683 34 1 0.2138 -4.9061 1.1553 35 1 3.0201 -2.8499 2.0295 36 1 1.4033 -3.4250 2.5022 37 1 2.9881 -5.6190 1.6181 38 1 3.5018 -7.3805 2.0327 39 1 4.4903 -9.5301 2.7862 40 1 5.2841 -9.7468 5.1049 41 1 4.3279 -4.5219 5.8637 42 1 5.0699 -6.8015 7.8855 43 1 5.1705 -4.9889 8.2103 44 1 2.6801 -4.7721 7.7760 45 1 2.5783 -6.5846 7.4509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027996695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:24 Heat of formation + Delta-G solvation = 51.612308 kcal Electronic energy + Delta-G solvation = -26057.618670 eV Core-core repulsion = 22462.541257 eV Total energy + Delta-G solvation = -3595.077413 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91919 -39.00153 -37.60676 -36.88496 -34.36280 -32.83259 -32.43622 -31.35944 -29.66368 -28.69418 -25.40575 -24.61698 -24.56368 -23.42390 -22.26454 -21.01093 -20.61235 -20.14866 -19.59438 -17.82733 -17.12605 -16.65759 -16.43002 -15.52906 -15.45936 -14.99630 -14.85844 -14.60171 -14.28257 -14.08407 -13.82086 -13.76760 -13.12878 -12.98749 -12.68978 -12.16973 -11.93489 -11.92255 -11.73341 -11.47562 -11.33960 -10.95512 -10.82516 -10.80458 -10.47829 -10.29421 -10.12343 -10.07345 -10.00716 -9.96464 -9.87464 -9.79640 -9.30929 -9.07751 -8.67344 -8.58040 -6.82482 -5.82417 -3.20997 0.50242 0.93582 2.92100 3.29669 3.38485 3.44190 3.45692 3.58370 3.95498 4.06180 4.42742 4.46687 4.48874 4.61190 4.84789 5.02612 5.08481 5.13209 5.22704 5.30206 5.36132 5.46361 5.46826 5.58522 5.70058 5.75519 5.76394 5.82215 5.90225 6.02281 6.08965 6.19301 6.19769 6.27403 6.39878 6.41421 6.51444 6.57927 6.66403 6.78156 7.01787 7.42085 7.60147 7.64968 7.74233 7.75266 8.22238 8.39570 9.13110 9.73488 10.43068 11.30601 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.003311 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.267019 B = 8454.527846 C = 9547.620490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.004 3.996 3 Si 0.909 3.091 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.239 4.239 8 H 0.074 0.926 9 N -0.586 5.586 10 C 0.174 3.826 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.151 3.849 14 H 0.037 0.963 15 C 0.110 3.890 16 N -0.717 5.717 17 C 0.554 3.446 18 O -0.524 6.524 19 C -0.176 4.176 20 C -0.042 4.042 21 C -0.188 4.188 22 C 0.122 3.878 23 N -0.488 5.488 24 C 0.217 3.783 25 C -0.112 4.112 26 C -0.169 4.169 27 C -0.151 4.151 28 H 0.255 0.745 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.393 0.607 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.144 0.856 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.775 -18.781 6.594 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.194 4.194 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.092 0.908 9 N -0.311 5.311 10 C 0.049 3.951 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.054 0.946 15 C -0.015 4.015 16 N -0.368 5.368 17 C 0.339 3.661 18 O -0.402 6.402 19 C -0.181 4.181 20 C -0.068 4.068 21 C -0.208 4.208 22 C -0.036 4.036 23 N -0.196 5.196 24 C 0.079 3.921 25 C -0.131 4.131 26 C -0.206 4.206 27 C -0.189 4.189 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.227 0.773 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.177 0.823 41 H 0.162 0.838 42 H 0.122 0.878 43 H 0.112 0.888 44 H 0.118 0.882 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.857 -17.966 7.998 20.827 hybrid contribution 0.164 0.532 -1.313 1.426 sum 7.020 -17.434 6.685 19.948 Atomic orbital electron populations 1.69932 1.05122 1.25519 1.55003 1.25026 0.95636 0.97990 1.00753 0.86181 0.78947 0.83402 0.77604 1.21469 1.21518 1.20415 1.18934 0.90296 0.82073 1.45487 0.90843 1.44434 1.10266 1.02478 1.73895 1.21382 0.85755 0.89531 0.98433 1.22991 0.98013 0.99746 0.97930 1.22607 0.97483 0.96953 0.99425 1.21154 0.94983 0.88510 0.91086 0.94585 1.22282 0.98461 0.82661 0.98054 1.46084 1.63763 1.18419 1.08504 1.17989 0.78716 0.86437 0.82939 1.90745 1.53666 1.45602 1.50166 1.20879 1.05347 0.96044 0.95874 1.21802 0.93762 0.92089 0.99170 1.22076 1.01917 0.98699 0.98090 1.22945 0.93841 0.97046 0.89746 1.67493 1.15369 0.99822 1.36952 1.20564 0.89149 0.91499 0.90911 1.21273 1.06466 0.97558 0.87798 1.23002 0.96588 1.03451 0.97583 1.22839 0.92523 1.03092 1.00435 0.93510 0.92037 0.95033 0.92309 0.92301 0.92502 0.91767 0.91288 0.91300 0.77322 0.84264 0.84167 0.82336 0.83817 0.87809 0.88760 0.88207 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.28 10.82 55.49 0.60 -25.68 16 2 C 0.00 0.12 5.46 -17.43 -0.10 0.02 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.24 -6.47 9.74 -15.06 -0.15 -6.62 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.59 -14.28 3.12 -162.57 -0.51 -14.79 16 10 C 0.17 4.06 5.35 -2.53 -0.01 4.04 16 11 C -0.15 -2.63 7.09 -24.58 -0.17 -2.80 16 12 C -0.13 -2.03 6.06 -24.90 -0.15 -2.18 16 13 C 0.15 2.90 3.23 -66.95 -0.22 2.68 16 14 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 15 C 0.11 2.09 5.06 -4.05 -0.02 2.06 16 16 N -0.72 -10.58 5.27 -61.26 -0.32 -10.90 16 17 C 0.55 8.77 7.74 -12.33 -0.10 8.67 16 18 O -0.52 -10.03 13.42 5.32 0.07 -9.96 16 19 C -0.18 -2.31 5.89 -104.82 -0.62 -2.93 16 20 C -0.04 -0.40 9.63 -38.87 -0.37 -0.78 16 21 C -0.19 -1.50 10.10 -39.49 -0.40 -1.89 16 22 C 0.12 1.10 11.17 -17.47 -0.20 0.90 16 23 N -0.49 -5.89 9.28 -9.15 -0.08 -5.98 16 24 C 0.22 2.94 6.50 -82.18 -0.53 2.40 16 25 C -0.11 -1.55 4.62 -91.77 -0.42 -1.98 16 26 C -0.17 -1.93 10.03 -26.69 -0.27 -2.20 16 27 C -0.15 -1.86 10.24 -26.69 -0.27 -2.14 16 28 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.06 1.59 7.35 -51.93 -0.38 1.21 16 30 H 0.03 0.81 7.92 -51.93 -0.41 0.40 16 31 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 1.04 7.82 -51.93 -0.41 0.63 16 35 H 0.07 1.48 7.94 -51.93 -0.41 1.07 16 36 H 0.07 1.47 8.09 -51.93 -0.42 1.05 16 37 H 0.39 4.52 6.45 -40.82 -0.26 4.25 16 38 H 0.14 1.00 6.57 -52.49 -0.34 0.65 16 39 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.14 2.26 6.12 -51.93 -0.32 1.94 16 42 H 0.10 1.17 7.54 -51.93 -0.39 0.78 16 43 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -31.88 365.73 -10.45 -42.33 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.70 Total: 5.36 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: -4.00 Total: -2.73 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.31 Total: -57.35 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.07 Total: -9.96 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.88 -10.45 -42.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027996695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.940 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds