Wall clock time and date at job start Tue Mar 31 2020 10:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99859 * 2 1 4 4 H 1.48499 * 109.47739 * 270.00511 * 3 2 1 5 5 H 1.48504 * 109.47328 * 30.00541 * 3 2 1 6 6 H 1.48504 * 109.47186 * 150.00059 * 3 2 1 7 7 C 1.38805 * 120.00175 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00121 * 179.97438 * 7 2 1 9 9 N 1.36941 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.47421 * 125.64662 * 20.37805 * 9 7 2 11 11 C 1.54914 * 104.83426 * 155.88974 * 10 9 7 12 12 C 1.55155 * 101.57843 * 37.00590 * 11 10 9 13 13 C 1.47019 * 125.65030 * 200.39477 * 9 7 2 14 14 H 1.09004 * 110.01452 * 300.53138 * 13 9 7 15 15 C 1.53005 * 109.88312 * 61.62394 * 13 9 7 16 16 N 1.46488 * 109.47302 * 181.62678 * 15 13 9 17 17 C 1.34784 * 119.99921 * 185.16332 * 16 15 13 18 18 O 1.21547 * 119.99893 * 359.97438 * 17 16 15 19 19 C 1.47845 * 120.00025 * 180.02562 * 17 16 15 20 20 C 1.40021 * 120.55631 * 353.97564 * 19 17 16 21 21 C 1.38362 * 118.28710 * 179.97438 * 20 19 17 22 22 C 1.38352 * 119.30035 * 359.97438 * 21 20 19 23 23 N 1.31923 * 121.08006 * 359.97438 * 22 21 20 24 24 C 1.31692 * 121.88050 * 359.76369 * 23 22 21 25 25 C 1.50700 * 119.71755 * 180.25098 * 24 23 22 26 26 C 1.52999 * 117.49867 * 358.92236 * 25 24 23 27 27 C 1.53000 * 117.49746 * 290.26226 * 25 24 23 28 28 H 0.96996 * 120.00078 * 359.97438 * 1 2 3 29 29 H 1.08998 * 110.36935 * 37.05111 * 10 9 7 30 30 H 1.09003 * 110.46007 * 274.77544 * 10 9 7 31 31 H 1.08997 * 111.00316 * 278.93621 * 11 10 9 32 32 H 1.08999 * 111.00660 * 155.07828 * 11 10 9 33 33 H 1.08998 * 110.72172 * 206.13426 * 12 11 10 34 34 H 1.08997 * 110.71859 * 82.86603 * 12 11 10 35 35 H 1.08999 * 109.47104 * 301.62846 * 15 13 9 36 36 H 1.08997 * 109.46777 * 61.62337 * 15 13 9 37 37 H 0.97001 * 120.00340 * 5.15937 * 16 15 13 38 38 H 1.07999 * 120.85963 * 359.95167 * 20 19 17 39 39 H 1.08000 * 120.34815 * 179.97438 * 21 20 19 40 40 H 1.08001 * 119.45672 * 180.02562 * 22 21 20 41 41 H 1.09003 * 115.55169 * 144.59190 * 25 24 23 42 42 H 1.08997 * 117.49816 * 0.02562 * 26 25 24 43 43 H 1.09007 * 117.49991 * 145.02024 * 26 25 24 44 44 H 1.09001 * 117.50194 * 214.97891 * 27 25 24 45 45 H 1.08998 * 117.49751 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0466 -1.4000 5 1 1.4477 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.0767 -2.5705 -0.4172 11 6 -0.1782 -4.0613 -0.8258 12 6 0.7482 -4.7349 0.2209 13 6 1.8671 -3.6901 0.4153 14 1 2.7281 -3.9500 -0.2007 15 6 2.2786 -3.6362 1.8880 16 7 2.8523 -4.9251 2.2822 17 6 3.1914 -5.1469 3.5677 18 8 3.0216 -4.2773 4.3997 19 6 3.7710 -6.4476 3.9655 20 6 3.8569 -7.4998 3.0456 21 6 4.4082 -8.6965 3.4679 22 6 4.8530 -8.8140 4.7727 23 7 4.7601 -7.8049 5.6174 24 6 4.2480 -6.6449 5.2616 25 6 4.1708 -5.5231 6.2649 26 6 4.6792 -5.8049 7.6802 27 6 3.1767 -5.6741 7.4181 28 1 -0.4850 0.8400 0.0004 29 1 -0.3067 -1.9278 -1.2670 30 1 -0.7513 -2.3576 0.4121 31 1 0.1978 -4.2157 -1.8371 32 1 -1.2020 -4.4234 -0.7317 33 1 1.1553 -5.6681 -0.1683 34 1 0.2138 -4.9061 1.1553 35 1 3.0201 -2.8499 2.0295 36 1 1.4033 -3.4250 2.5022 37 1 2.9881 -5.6190 1.6181 38 1 3.5018 -7.3805 2.0327 39 1 4.4903 -9.5301 2.7862 40 1 5.2841 -9.7468 5.1049 41 1 4.3279 -4.5219 5.8637 42 1 5.0699 -6.8015 7.8855 43 1 5.1705 -4.9889 8.2103 44 1 2.6801 -4.7721 7.7760 45 1 2.5783 -6.5846 7.4509 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027996695.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:23 Heat of formation + Delta-G solvation = 31.541833 kcal Electronic energy + Delta-G solvation = -26058.488991 eV Core-core repulsion = 22462.541257 eV Total energy + Delta-G solvation = -3595.947734 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86108 -40.23903 -39.15995 -37.83092 -35.80583 -34.46461 -33.61336 -32.19135 -31.39710 -30.29007 -26.88145 -26.21030 -25.42797 -24.75010 -23.23112 -22.17328 -21.86052 -21.55789 -21.15048 -19.14236 -18.40459 -17.98396 -17.47758 -16.98268 -16.60223 -16.39533 -16.11972 -15.93600 -15.67992 -15.29420 -15.10762 -14.88032 -14.41809 -14.00525 -13.99550 -13.68156 -13.54833 -13.39556 -12.98209 -12.89334 -12.82006 -12.64549 -12.40222 -12.04331 -11.91928 -11.75675 -11.71498 -11.53711 -11.46226 -11.39435 -10.95346 -10.92070 -10.67624 -10.35373 -10.16339 -9.79228 -8.82126 -7.92679 -5.31839 -0.35140 0.19045 1.42633 1.45079 1.53147 1.84668 2.05898 2.47729 2.66923 3.07347 3.18934 3.28887 3.53444 3.69046 3.77637 3.85398 3.95478 3.98141 4.03249 4.14316 4.19252 4.24979 4.26193 4.44549 4.49647 4.56646 4.68752 4.72834 4.74184 4.95309 4.97220 4.99592 5.04887 5.06445 5.13618 5.17125 5.23605 5.29556 5.39712 5.43748 5.57428 5.63402 5.64833 5.76442 6.22022 6.52048 6.91437 7.07152 7.20419 7.73804 8.41820 9.19499 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.003311 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.267019 B = 8454.527846 C = 9547.620490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.054 4.054 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.272 1.272 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.175 3.825 11 C -0.132 4.132 12 C -0.113 4.113 13 C 0.148 3.852 14 H 0.054 0.946 15 C 0.132 3.868 16 N -0.700 5.700 17 C 0.551 3.449 18 O -0.568 6.568 19 C -0.200 4.200 20 C -0.038 4.038 21 C -0.171 4.171 22 C 0.121 3.879 23 N -0.506 5.506 24 C 0.198 3.802 25 C -0.133 4.133 26 C -0.149 4.149 27 C -0.154 4.154 28 H 0.248 0.752 29 H 0.025 0.975 30 H -0.005 1.005 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.413 0.587 38 H 0.168 0.832 39 H 0.185 0.815 40 H 0.196 0.804 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.285 -22.971 5.616 25.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.249 4.249 3 Si 0.797 3.203 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.197 1.197 7 C -0.374 4.374 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.050 3.950 11 C -0.171 4.171 12 C -0.151 4.151 13 C 0.040 3.960 14 H 0.072 0.928 15 C 0.006 3.994 16 N -0.353 5.353 17 C 0.339 3.661 18 O -0.449 6.449 19 C -0.205 4.205 20 C -0.064 4.064 21 C -0.191 4.191 22 C -0.036 4.036 23 N -0.215 5.215 24 C 0.061 3.939 25 C -0.152 4.152 26 C -0.186 4.186 27 C -0.191 4.191 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.013 0.987 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.251 0.749 38 H 0.186 0.814 39 H 0.202 0.798 40 H 0.213 0.787 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.397 -22.216 7.002 24.761 hybrid contribution -0.232 1.699 -0.988 1.979 sum 8.165 -20.518 6.014 22.887 Atomic orbital electron populations 1.70123 1.06393 1.25555 1.56865 1.25772 0.96436 1.01101 1.01577 0.85230 0.77783 0.79583 0.77668 1.20722 1.22175 1.19742 1.19250 0.90647 0.83542 1.43911 0.90757 1.44703 1.10581 1.03544 1.74537 1.21204 0.84864 0.93213 0.95745 1.22858 1.00114 0.95051 0.99044 1.22608 0.95716 0.97649 0.99110 1.21368 0.96751 0.87182 0.90668 0.92811 1.21688 0.96215 0.83849 0.97650 1.45715 1.63353 1.17292 1.08953 1.18528 0.77859 0.87267 0.82469 1.90733 1.55344 1.47406 1.51386 1.20653 1.07447 0.95498 0.96899 1.22171 0.93011 0.91500 0.99677 1.22543 0.99419 0.98955 0.98134 1.23697 0.92550 0.97262 0.90083 1.67501 1.15924 0.99923 1.38172 1.20490 0.90375 0.92063 0.91008 1.21147 1.08074 0.96934 0.89016 1.23023 0.95747 1.04025 0.95828 1.22840 0.93149 1.02996 1.00150 0.94250 0.95637 0.98726 0.90840 0.89945 0.87302 0.91885 0.94799 0.94620 0.74898 0.81416 0.79807 0.78744 0.86796 0.87225 0.87708 0.88561 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.07 10.82 21.65 0.23 -56.84 16 2 C -0.05 -3.11 5.46 84.86 0.46 -2.65 16 3 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.24 -13.59 9.74 84.03 0.82 -12.77 16 8 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 9 N -0.61 -30.28 3.12 -668.26 -2.09 -32.37 16 10 C 0.17 8.39 5.35 86.86 0.46 8.86 16 11 C -0.13 -4.39 7.09 31.99 0.23 -4.17 16 12 C -0.11 -3.26 6.06 31.78 0.19 -3.07 16 13 C 0.15 5.50 3.23 45.34 0.15 5.65 16 14 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 15 C 0.13 5.12 5.06 86.38 0.44 5.56 16 16 N -0.70 -20.04 5.27 -465.99 -2.46 -22.49 16 17 C 0.55 17.66 7.74 86.79 0.67 18.33 16 18 O -0.57 -23.18 13.42 -3.86 -0.05 -23.23 16 19 C -0.20 -5.00 5.89 -19.99 -0.12 -5.12 16 20 C -0.04 -0.58 9.63 22.73 0.22 -0.36 16 21 C -0.17 -1.82 10.10 22.33 0.23 -1.59 16 22 C 0.12 1.68 11.17 84.71 0.95 2.62 16 23 N -0.51 -11.18 9.28 -182.85 -1.70 -12.88 16 24 C 0.20 5.27 6.50 42.89 0.28 5.55 16 25 C -0.13 -3.83 4.62 -11.54 -0.05 -3.88 16 26 C -0.15 -3.42 10.03 30.62 0.31 -3.12 16 27 C -0.15 -3.92 10.24 30.62 0.31 -3.61 16 28 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.03 1.37 7.35 -2.39 -0.02 1.35 16 30 H -0.01 -0.29 7.92 -2.39 -0.02 -0.31 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.06 1.87 7.82 -2.39 -0.02 1.85 16 35 H 0.03 1.53 7.94 -2.39 -0.02 1.51 16 36 H 0.04 1.61 8.09 -2.39 -0.02 1.59 16 37 H 0.41 8.17 6.45 -92.71 -0.60 7.57 16 38 H 0.17 1.49 6.57 -2.91 -0.02 1.47 16 39 H 0.18 0.40 8.06 -2.91 -0.02 0.38 16 40 H 0.20 1.18 8.06 -2.91 -0.02 1.15 16 41 H 0.11 3.93 6.12 -2.39 -0.01 3.92 16 42 H 0.11 2.38 7.54 -2.39 -0.02 2.36 16 43 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -76.82 365.73 1.91 -74.91 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.40 Total: 18.20 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 5.54 Total: 6.24 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -6.00 Total: -124.58 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.05 Total: -23.23 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -76.82 1.91 -74.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027996695.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.450 kcal (2) G-P(sol) polarization free energy of solvation -76.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds