Wall clock time and date at job start Tue Mar 31 2020 11:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47422 * 125.64800 * 359.96776 * 9 7 2 11 11 C 1.55136 * 104.72050 * 155.81448 * 10 9 7 12 12 C 1.55163 * 101.48333 * 37.29811 * 11 10 9 13 13 H 1.09000 * 110.86906 * 82.76241 * 12 11 10 14 14 C 1.52995 * 110.71726 * 205.96911 * 12 11 10 15 15 N 1.46502 * 109.47048 * 179.97438 * 14 12 11 16 16 C 1.34770 * 120.00253 * 180.02562 * 15 14 12 17 17 O 1.21284 * 120.00140 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00325 * 179.97438 * 16 15 14 19 19 H 1.09000 * 115.54758 * 34.28131 * 18 16 15 20 20 C 1.52996 * 117.49937 * 248.60638 * 18 16 15 21 21 C 1.52997 * 117.49876 * 179.97438 * 18 16 15 22 22 H 1.08996 * 117.50341 * 359.97438 * 21 18 16 23 23 C 1.50706 * 117.49760 * 214.98110 * 21 18 16 24 24 C 1.38644 * 120.78847 * 299.71936 * 23 21 18 25 25 C 1.38207 * 119.16268 * 179.75601 * 24 23 21 26 26 N 1.31875 * 120.76174 * 0.53093 * 25 24 23 27 27 C 1.31867 * 121.72509 * 359.74576 * 26 25 24 28 28 C 1.38200 * 120.76529 * 359.97438 * 27 26 25 29 29 C 1.47020 * 125.64411 * 180.27542 * 9 7 2 30 30 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 31 31 H 1.08991 * 110.36917 * 274.74799 * 10 9 7 32 32 H 1.09000 * 110.36516 * 37.07108 * 10 9 7 33 33 H 1.08995 * 111.19563 * 279.19409 * 11 10 9 34 34 H 1.09000 * 110.90588 * 155.27564 * 11 10 9 35 35 H 1.09002 * 109.47223 * 299.97333 * 14 12 11 36 36 H 1.08997 * 109.47409 * 59.97364 * 14 12 11 37 37 H 0.97003 * 119.99945 * 359.97438 * 15 14 12 38 38 H 1.08996 * 117.50181 * 359.97438 * 20 18 16 39 39 H 1.09008 * 117.49566 * 145.02286 * 20 18 16 40 40 H 1.07998 * 120.42410 * 0.02562 * 24 23 21 41 41 H 1.08002 * 119.62116 * 180.29963 * 25 24 23 42 42 H 1.08001 * 119.61714 * 179.97438 * 27 26 25 43 43 H 1.07996 * 120.42239 * 180.02562 * 28 27 26 44 44 H 1.08991 * 109.88560 * 300.44049 * 29 9 7 45 45 H 1.09008 * 109.88523 * 61.45753 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.1414 -2.5331 0.0140 11 6 -0.4019 -3.9356 -0.5959 12 6 0.7786 -4.7526 -0.0071 13 1 0.5487 -5.0951 1.0019 14 6 1.1228 -5.9362 -0.9133 15 7 2.2390 -6.6870 -0.3330 16 6 2.7170 -7.7783 -0.9630 17 8 2.2228 -8.1392 -2.0101 18 6 3.8655 -8.5503 -0.3664 19 1 3.8904 -8.5893 0.7226 20 6 5.2060 -8.5040 -1.1025 21 6 4.3621 -9.7801 -1.1292 22 1 3.8578 -10.0311 -2.0623 23 6 4.8484 -10.9530 -0.3174 24 6 5.9179 -10.8180 0.5544 25 6 6.3328 -11.9145 1.2863 26 7 5.7306 -13.0804 1.1546 27 6 4.7142 -13.2467 0.3312 28 6 4.2406 -12.1942 -0.4289 29 6 1.9320 -3.7274 0.0138 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5225 -2.4837 1.0339 32 1 -0.6020 -1.7607 -0.6018 33 1 -0.3528 -3.9073 -1.6844 34 1 -1.3590 -4.3343 -0.2597 35 1 0.2545 -6.5887 -1.0044 36 1 1.4060 -5.5685 -1.8995 37 1 2.6346 -6.3982 0.5043 38 1 5.2571 -7.9155 -2.0186 39 1 6.1128 -8.5129 -0.4978 40 1 6.4178 -9.8669 0.6636 41 1 7.1620 -11.8165 1.9712 42 1 4.2464 -14.2168 0.2498 43 1 3.4075 -12.3366 -1.1013 44 1 2.5579 -3.8556 -0.8692 45 1 2.5311 -3.8584 0.9150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028547802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:40 Heat of formation + Delta-G solvation = 25.301219 kcal Electronic energy + Delta-G solvation = -24868.896052 eV Core-core repulsion = 21272.677705 eV Total energy + Delta-G solvation = -3596.218347 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.53993 -40.73276 -39.36809 -37.77823 -36.02542 -34.30728 -32.96322 -32.08562 -31.64587 -29.94459 -27.55068 -26.21389 -25.41702 -24.45876 -23.89939 -22.21044 -21.80065 -21.33818 -20.74519 -18.96533 -18.57684 -17.76167 -17.18257 -17.12449 -16.72936 -16.54410 -16.39039 -15.97930 -15.61156 -15.14134 -14.96257 -14.78324 -14.48294 -14.29387 -14.25936 -13.56007 -13.51861 -13.36770 -13.13557 -12.95037 -12.82990 -12.66562 -12.55973 -12.14246 -12.01883 -11.86294 -11.82736 -11.60648 -11.58989 -11.37453 -10.94545 -10.74381 -10.42541 -10.25225 -10.10210 -10.06658 -8.87889 -7.77406 -5.21735 0.20715 0.22632 1.46328 1.46667 1.48359 1.56855 2.10601 2.49559 2.68506 3.04484 3.32074 3.38551 3.59989 3.62378 3.65224 3.75944 3.80602 3.91530 3.98677 4.03585 4.11131 4.19080 4.23711 4.29091 4.44769 4.63707 4.64266 4.70305 4.77774 4.79889 4.91107 4.91703 4.94440 4.98331 5.05731 5.12566 5.13527 5.34891 5.41812 5.44240 5.48561 5.65675 5.79340 5.82908 6.32182 6.53140 7.05304 7.11210 7.20482 7.79381 8.42643 9.24349 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025147 B = 0.002120 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.188007 B =13205.785862 C =13821.476492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.980 3.020 4 H -0.287 1.287 5 H -0.294 1.294 6 H -0.269 1.269 7 C -0.238 4.238 8 H 0.081 0.919 9 N -0.629 5.629 10 C 0.151 3.849 11 C -0.123 4.123 12 C -0.093 4.093 13 H 0.096 0.904 14 C 0.144 3.856 15 N -0.712 5.712 16 C 0.538 3.462 17 O -0.585 6.585 18 C -0.172 4.172 19 H 0.149 0.851 20 C -0.126 4.126 21 C -0.093 4.093 22 H 0.114 0.886 23 C -0.015 4.015 24 C -0.170 4.170 25 C 0.091 3.909 26 N -0.518 5.518 27 C 0.090 3.910 28 C -0.173 4.173 29 C 0.138 3.862 30 H 0.247 0.753 31 H -0.009 1.009 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.415 0.585 38 H 0.100 0.900 39 H 0.138 0.862 40 H 0.161 0.839 41 H 0.178 0.822 42 H 0.173 0.827 43 H 0.144 0.856 44 H 0.021 0.979 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.389 -23.609 1.787 25.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.808 3.192 4 H -0.214 1.214 5 H -0.221 1.221 6 H -0.194 1.194 7 C -0.367 4.367 8 H 0.099 0.901 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.162 4.162 12 C -0.113 4.113 13 H 0.114 0.886 14 C 0.020 3.980 15 N -0.362 5.362 16 C 0.325 3.675 17 O -0.466 6.466 18 C -0.193 4.193 19 H 0.167 0.833 20 C -0.163 4.163 21 C -0.112 4.112 22 H 0.132 0.868 23 C -0.023 4.023 24 C -0.189 4.189 25 C -0.065 4.065 26 N -0.228 5.228 27 C -0.066 4.066 28 C -0.192 4.192 29 C 0.013 3.987 30 H 0.056 0.944 31 H 0.009 0.991 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.070 0.930 37 H 0.251 0.749 38 H 0.119 0.881 39 H 0.156 0.844 40 H 0.178 0.822 41 H 0.195 0.805 42 H 0.191 0.809 43 H 0.162 0.838 44 H 0.039 0.961 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 10.299 -24.350 1.556 26.484 hybrid contribution -0.196 2.066 -0.198 2.085 sum 10.103 -22.284 1.358 24.505 Atomic orbital electron populations 1.70048 1.06199 1.24981 1.58687 1.25648 0.96670 1.01050 1.02876 0.85053 0.77624 0.79064 0.77443 1.21364 1.22088 1.19382 1.19454 0.91020 0.83845 1.42362 0.90134 1.44837 1.02821 1.01056 1.86789 1.21786 0.84155 0.94851 0.96625 1.22886 0.97829 0.95554 0.99955 1.22282 0.95749 0.93285 0.99947 0.88567 1.21195 0.89179 0.91701 0.95939 1.45894 1.35430 1.27732 1.27178 1.20090 0.83440 0.80233 0.83700 1.90685 1.61510 1.69436 1.24973 1.22334 0.95117 1.00780 1.01118 0.83314 1.23289 0.93102 0.97545 1.02360 1.20972 1.03534 0.87011 0.99661 0.86785 1.19614 0.94429 0.93634 0.94659 1.22314 0.97565 1.01855 0.97194 1.23204 0.98503 0.87598 0.97237 1.67702 1.09370 1.26506 1.19199 1.23096 0.92373 0.99864 0.91252 1.22214 1.01863 0.93375 1.01779 1.21496 0.94710 0.84587 0.97887 0.94375 0.99116 0.91127 0.91966 0.89328 0.90806 0.92951 0.74871 0.88122 0.84370 0.82163 0.80512 0.80942 0.83803 0.96075 0.95191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.38 10.09 21.65 0.22 -56.16 16 2 C -0.07 -3.96 5.49 84.86 0.47 -3.49 16 3 Si 0.98 45.32 29.55 68.60 2.03 47.35 16 4 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.24 -13.19 10.27 84.03 0.86 -12.33 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 9 N -0.63 -31.74 3.39 -691.54 -2.35 -34.09 16 10 C 0.15 7.29 5.90 86.94 0.51 7.80 16 11 C -0.12 -4.34 6.54 32.07 0.21 -4.13 16 12 C -0.09 -2.82 3.01 -9.60 -0.03 -2.84 16 13 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 14 C 0.14 3.83 4.99 86.38 0.43 4.26 16 15 N -0.71 -15.74 5.40 -463.07 -2.50 -18.24 16 16 C 0.54 12.72 7.61 87.66 0.67 13.38 16 17 O -0.59 -18.70 16.26 -3.04 -0.05 -18.75 16 18 C -0.17 -2.70 5.84 -11.54 -0.07 -2.76 16 19 H 0.15 1.65 8.14 -2.39 -0.02 1.64 16 20 C -0.13 -1.60 9.59 30.60 0.29 -1.30 16 21 C -0.09 -1.46 5.59 -11.53 -0.06 -1.53 16 22 H 0.11 2.22 7.67 -2.39 -0.02 2.20 16 23 C -0.02 -0.22 5.64 -19.67 -0.11 -0.33 16 24 C -0.17 -2.00 9.39 22.36 0.21 -1.79 16 25 C 0.09 1.23 11.18 84.68 0.95 2.17 16 26 N -0.52 -9.18 10.36 -195.84 -2.03 -11.21 16 27 C 0.09 1.36 11.18 84.68 0.95 2.31 16 28 C -0.17 -2.56 9.84 22.36 0.22 -2.34 16 29 C 0.14 5.28 6.52 86.73 0.57 5.85 16 30 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.07 3.95 5.87 -2.39 -0.01 3.93 16 33 H 0.06 2.21 8.05 -2.39 -0.02 2.19 16 34 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.05 1.61 8.06 -2.39 -0.02 1.59 16 37 H 0.41 7.24 8.33 -92.71 -0.77 6.47 16 38 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.14 0.96 6.25 -2.38 -0.01 0.94 16 40 H 0.16 1.01 6.16 -2.91 -0.02 0.99 16 41 H 0.18 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 43 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 44 H 0.02 0.83 7.76 -2.39 -0.02 0.81 16 45 H 0.03 1.08 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -73.69 370.42 1.61 -72.08 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.23 Total: 16.08 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 6.06 Total: 2.93 kcal Atomic # 7 Polarization: -113.04 SS G_CDS: -6.66 Total: -119.70 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.05 Total: -18.75 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.69 1.61 -72.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028547802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.380 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds