Wall clock time and date at job start Tue Mar 31 2020 11:14:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31614 * 1
3 3 Si 1.86797 * 120.00127 * 2 1
4 4 H 1.48496 * 109.47223 * 274.98801 * 3 2 1
5 5 H 1.48495 * 109.47033 * 34.98543 * 3 2 1
6 6 H 1.48503 * 109.47084 * 154.98914 * 3 2 1
7 7 C 1.38816 * 120.00091 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00398 * 186.84746 * 7 2 1
9 9 N 1.36942 * 119.99858 * 6.84458 * 7 2 1
10 10 C 1.47026 * 125.64773 * 353.98235 * 9 7 2
11 11 C 1.54320 * 107.26860 * 181.02204 * 10 9 7
12 12 C 1.55151 * 102.94359 * 22.19490 * 11 10 9
13 13 H 1.09007 * 111.04051 * 82.58677 * 12 11 10
14 14 C 1.52998 * 111.00466 * 206.41991 * 12 11 10
15 15 N 1.46507 * 109.47339 * 178.64826 * 14 12 11
16 16 C 1.34773 * 119.99674 * 180.02562 * 15 14 12
17 17 O 1.21274 * 120.00637 * 359.97438 * 16 15 14
18 18 C 1.50705 * 119.99279 * 180.02562 * 16 15 14
19 19 H 1.08997 * 110.87044 * 297.96313 * 18 16 15
20 20 C 1.54424 * 110.80791 * 174.48667 * 18 16 15
21 21 C 1.51061 * 105.14722 * 215.61393 * 20 18 16
22 22 C 1.38622 * 131.51719 * 197.04073 * 21 20 18
23 23 C 1.38212 * 119.09735 * 180.02562 * 22 21 20
24 24 N 1.31893 * 120.70916 * 359.95529 * 23 22 21
25 25 C 1.31832 * 121.78505 * 0.03117 * 24 23 22
26 26 C 1.38338 * 120.75656 * 359.97438 * 25 24 23
27 27 C 1.51189 * 131.26509 * 179.97438 * 26 25 24
28 28 C 1.47422 * 125.64999 * 173.93940 * 9 7 2
29 29 H 0.97004 * 119.99889 * 359.97438 * 1 2 3
30 30 H 1.08998 * 109.88125 * 300.44340 * 10 9 7
31 31 H 1.09002 * 109.88167 * 61.44957 * 10 9 7
32 32 H 1.08999 * 110.72109 * 263.82353 * 11 10 9
33 33 H 1.09005 * 110.71835 * 140.56046 * 11 10 9
34 34 H 1.09000 * 109.46873 * 58.65017 * 14 12 11
35 35 H 1.08995 * 109.47496 * 298.65342 * 14 12 11
36 36 H 0.97003 * 119.99368 * 0.02562 * 15 14 12
37 37 H 1.09000 * 110.30474 * 334.53177 * 20 18 16
38 38 H 1.09000 * 110.31002 * 96.59651 * 20 18 16
39 39 H 1.08000 * 120.45199 * 359.97438 * 22 21 20
40 40 H 1.07995 * 119.64861 * 179.97438 * 23 22 21
41 41 H 1.08000 * 119.61817 * 180.02562 * 25 24 23
42 42 H 1.08996 * 110.29370 * 44.02041 * 27 26 25
43 43 H 1.09000 * 110.29539 * 281.88426 * 27 26 25
44 44 H 1.09003 * 110.36273 * 37.07288 * 28 9 7
45 45 H 1.08995 * 110.36741 * 274.74823 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3161 0.0000 0.0000
3 14 2.2502 1.6177 0.0000
4 1 2.3923 2.1072 -1.3947
5 1 1.5043 2.6199 0.8027
6 1 3.5965 1.4119 0.5919
7 6 2.0102 -1.2022 -0.0005
8 1 3.0844 -1.2056 0.1110
9 7 1.3328 -2.3838 -0.1424
10 6 -0.1293 -2.5345 -0.1774
11 6 -0.4312 -4.0407 -0.3248
12 6 0.8656 -4.7085 0.2038
13 1 0.8575 -4.7721 1.2919
14 6 1.0652 -6.0903 -0.4219
15 7 2.3130 -6.6758 0.0748
16 6 2.6971 -7.8981 -0.3434
17 8 2.0097 -8.5136 -1.1304
18 6 3.9803 -8.5005 0.1680
19 1 4.8370 -7.8909 -0.1194
20 6 4.1449 -9.9506 -0.3365
21 6 4.8107 -10.6907 0.7997
22 6 5.4799 -11.9041 0.8388
23 6 5.9987 -12.3471 2.0409
24 7 5.8627 -11.6288 3.1387
25 6 5.2327 -10.4708 3.1373
26 6 4.6872 -9.9636 1.9715
27 6 3.9283 -8.6845 1.6998
28 6 1.9488 -3.7154 -0.2863
29 1 -0.4850 0.8401 0.0004
30 1 -0.5629 -2.1584 0.7492
31 1 -0.5381 -1.9871 -1.0267
32 1 -0.6000 -4.2996 -1.3701
33 1 -1.2878 -4.3239 0.2868
34 1 1.1154 -5.9943 -1.5065
35 1 0.2288 -6.7353 -0.1527
36 1 2.8626 -6.1836 0.7046
37 1 3.1706 -10.3884 -0.5537
38 1 4.7755 -9.9727 -1.2253
39 1 5.5936 -12.4956 -0.0576
40 1 6.5213 -13.2913 2.0816
41 1 5.1421 -9.9113 4.0566
42 1 4.4119 -7.8447 2.1988
43 1 2.8951 -8.7797 2.0337
44 1 2.8409 -3.7899 0.3357
45 1 2.1959 -3.9083 -1.3302
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001028799284.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:14:59
Heat of formation + Delta-G solvation = 15.227088 kcal
Electronic energy + Delta-G solvation = -25275.553090 eV
Core-core repulsion = 21678.897895 eV
Total energy + Delta-G solvation = -3596.655194 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-41.25277 -39.74583 -37.79355 -36.53304 -34.74547 -32.62409 -32.21857 -30.66402
-29.71908 -28.41556 -27.94148 -25.76264 -24.53467 -23.30619 -22.08874 -21.93884
-20.47863 -19.97801 -19.57449 -17.60417 -17.05372 -16.81345 -16.49640 -16.01863
-15.79394 -15.20958 -14.78894 -14.71313 -14.53087 -13.94799 -13.90150 -13.65139
-13.39577 -13.29490 -12.95766 -12.54569 -12.39091 -12.06156 -11.89062 -11.82851
-11.70576 -11.59089 -11.44804 -10.94520 -10.82805 -10.48300 -10.19575 -10.06356
-9.94192 -9.88954 -9.76196 -9.69775 -9.67073 -9.22829 -9.05021 -8.61680
-6.86682 -5.76313 -3.08983 0.77325 0.92356 2.50476 3.07201 3.37382
3.42579 3.44648 3.44962 3.83602 4.01294 4.20701 4.45902 4.49094
4.56800 4.61607 4.71934 4.93374 5.07559 5.09190 5.11578 5.19526
5.30541 5.35013 5.38145 5.49019 5.49677 5.56315 5.64201 5.69474
5.74895 5.84738 5.99119 6.00894 6.01302 6.29696 6.35536 6.38044
6.44148 6.48660 6.63118 6.86158 7.44778 7.51822 7.60088 7.64679
7.78918 8.12575 8.22337 9.17911 9.78639 10.44937 11.35834
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.023082 B = 0.002299 C = 0.002178
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1212.772385 B =12177.937188 C =12850.234380
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.007 4.007
3 Si 0.910 3.090
4 H -0.289 1.289
5 H -0.291 1.291
6 H -0.281 1.281
7 C -0.231 4.231
8 H 0.077 0.923
9 N -0.606 5.606
10 C 0.176 3.824
11 C -0.135 4.135
12 C -0.118 4.118
13 H 0.079 0.921
14 C 0.132 3.868
15 N -0.721 5.721
16 C 0.522 3.478
17 O -0.542 6.542
18 C -0.112 4.112
19 H 0.112 0.888
20 C -0.070 4.070
21 C -0.049 4.049
22 C -0.160 4.160
23 C 0.095 3.905
24 N -0.485 5.485
25 C 0.114 3.886
26 C -0.149 4.149
27 C -0.068 4.068
28 C 0.142 3.858
29 H 0.253 0.747
30 H 0.043 0.957
31 H 0.046 0.954
32 H 0.060 0.940
33 H 0.062 0.938
34 H 0.069 0.931
35 H 0.065 0.935
36 H 0.403 0.597
37 H 0.105 0.895
38 H 0.086 0.914
39 H 0.134 0.866
40 H 0.157 0.843
41 H 0.155 0.845
42 H 0.090 0.910
43 H 0.090 0.910
44 H 0.034 0.966
45 H 0.019 0.981
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.552 -21.913 2.855 23.695
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.204 4.204
3 Si 0.741 3.259
4 H -0.216 1.216
5 H -0.218 1.218
6 H -0.206 1.206
7 C -0.359 4.359
8 H 0.095 0.905
9 N -0.333 5.333
10 C 0.051 3.949
11 C -0.174 4.174
12 C -0.138 4.138
13 H 0.098 0.902
14 C 0.008 3.992
15 N -0.371 5.371
16 C 0.307 3.693
17 O -0.419 6.419
18 C -0.133 4.133
19 H 0.130 0.870
20 C -0.107 4.107
21 C -0.057 4.057
22 C -0.180 4.180
23 C -0.061 4.061
24 N -0.194 5.194
25 C -0.043 4.043
26 C -0.151 4.151
27 C -0.106 4.106
28 C 0.016 3.984
29 H 0.063 0.937
30 H 0.061 0.939
31 H 0.064 0.936
32 H 0.078 0.922
33 H 0.080 0.920
34 H 0.087 0.913
35 H 0.084 0.916
36 H 0.238 0.762
37 H 0.123 0.877
38 H 0.105 0.895
39 H 0.152 0.848
40 H 0.175 0.825
41 H 0.172 0.828
42 H 0.109 0.891
43 H 0.108 0.892
44 H 0.053 0.947
45 H 0.037 0.963
Dipole moment (debyes) X Y Z Total
from point charges 8.339 -22.416 3.086 24.115
hybrid contribution 0.372 1.490 -0.516 1.620
sum 8.711 -20.926 2.570 22.812
Atomic orbital electron populations
1.69975 1.04939 1.25097 1.56636 1.24833 0.95713 0.97722 1.02102
0.86122 0.78662 0.83592 0.77531 1.21599 1.21754 1.20634 1.19048
0.91065 0.82582 1.43235 0.90472 1.44478 1.01691 1.01094 1.86003
1.21164 0.84410 0.88310 1.00990 1.22852 0.95447 0.99106 0.99947
1.22621 0.98652 0.92377 1.00136 0.90217 1.21425 0.85130 0.93561
0.99067 1.46070 1.25427 1.18000 1.47621 1.20190 0.86602 0.81340
0.81174 1.90699 1.55289 1.61253 1.34687 1.22035 0.97385 0.97675
0.96198 0.86977 1.20950 1.02048 0.91950 0.95731 1.20913 0.94577
0.94021 0.96235 1.21648 0.99953 0.96335 1.00030 1.22722 0.96662
0.98972 0.87758 1.67742 1.15101 1.06140 1.30388 1.22260 0.93066
0.91924 0.97032 1.21485 1.00390 0.98267 0.94934 1.20936 1.00740
0.95023 0.93909 1.21557 0.93833 0.85955 0.97046 0.93715 0.93920
0.93565 0.92169 0.91963 0.91285 0.91635 0.76241 0.87704 0.89530
0.84785 0.82529 0.82767 0.89122 0.89202 0.94726 0.96298
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -26.72 10.36 55.49 0.57 -26.14 16
2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16
3 Si 0.91 21.79 29.56 -169.99 -5.02 16.77 16
4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16
7 C -0.23 -6.32 10.26 -15.06 -0.15 -6.47 16
8 H 0.08 2.03 7.84 -52.49 -0.41 1.62 16
9 N -0.61 -15.02 3.39 -170.07 -0.58 -15.60 16
10 C 0.18 4.15 5.38 -3.06 -0.02 4.14 16
11 C -0.13 -2.36 6.42 -24.90 -0.16 -2.52 16
12 C -0.12 -1.84 3.10 -88.48 -0.27 -2.11 16
13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16
14 C 0.13 1.76 5.12 -4.04 -0.02 1.74 16
15 N -0.72 -8.08 5.35 -60.29 -0.32 -8.41 16
16 C 0.52 6.07 7.06 -10.98 -0.08 6.00 16
17 O -0.54 -8.32 15.56 5.56 0.09 -8.23 16
18 C -0.11 -0.95 3.47 -90.31 -0.31 -1.26 16
19 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16
20 C -0.07 -0.61 6.06 -26.96 -0.16 -0.77 16
21 C -0.05 -0.44 6.20 -104.22 -0.65 -1.08 16
22 C -0.16 -1.25 10.12 -39.45 -0.40 -1.65 16
23 C 0.10 0.79 11.19 -17.53 -0.20 0.59 16
24 N -0.49 -4.91 10.36 -13.22 -0.14 -5.05 16
25 C 0.11 1.03 11.19 -17.51 -0.20 0.83 16
26 C -0.15 -1.30 6.19 -104.26 -0.64 -1.94 16
27 C -0.07 -0.51 6.26 -26.93 -0.17 -0.68 16
28 C 0.14 2.73 6.41 -2.53 -0.02 2.71 16
29 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16
30 H 0.04 1.11 7.54 -51.93 -0.39 0.72 16
31 H 0.05 1.22 7.36 -51.93 -0.38 0.84 16
32 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16
33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16
34 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16
35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16
36 H 0.40 3.78 8.33 -40.82 -0.34 3.44 16
37 H 0.10 1.07 7.07 -51.93 -0.37 0.71 16
38 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16
39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16
40 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16
41 H 0.16 1.05 8.06 -52.49 -0.42 0.63 16
42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16
43 H 0.09 0.70 7.88 -51.93 -0.41 0.29 16
44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16
45 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16
LS Contribution 365.45 15.07 5.51 5.51
Total: -1.00 -33.22 365.45 -10.35 -43.58
By element:
Atomic # 1 Polarization: 7.28 SS G_CDS: -6.92 Total: 0.36 kcal
Atomic # 6 Polarization: 0.76 SS G_CDS: -3.54 Total: -2.79 kcal
Atomic # 7 Polarization: -54.73 SS G_CDS: -0.46 Total: -55.19 kcal
Atomic # 8 Polarization: -8.32 SS G_CDS: 0.09 Total: -8.23 kcal
Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal
Total LS contribution 5.51 Total: 5.51 kcal
Total: -33.22 -10.35 -43.58 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001028799284.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.806 kcal
(2) G-P(sol) polarization free energy of solvation -33.224 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.578 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.227 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds