Wall clock time and date at job start Tue Mar 31 2020 11:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99857 * 2 1 4 4 H 1.48502 * 109.47249 * 239.99929 * 3 2 1 5 5 H 1.48496 * 109.47150 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46963 * 120.00157 * 3 2 1 7 7 C 1.38813 * 120.00503 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00603 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99508 * 359.97438 * 7 2 1 10 10 C 1.47859 * 126.94809 * 0.02562 * 9 7 2 11 11 C 1.55483 * 105.17391 * 181.92091 * 10 9 7 12 12 H 1.09002 * 116.03833 * 159.75563 * 11 10 9 13 13 C 1.57430 * 99.68488 * 32.85627 * 11 10 9 14 14 C 1.49289 * 126.93954 * 180.02562 * 9 7 2 15 15 H 1.08998 * 116.15812 * 15.84728 * 14 9 7 16 16 C 1.56027 * 104.09326 * 246.69936 * 14 9 7 17 17 N 1.47864 * 105.10389 * 288.77131 * 16 14 9 18 18 C 1.34774 * 126.94466 * 181.97524 * 17 16 14 19 19 O 1.21628 * 120.00486 * 180.02562 * 18 17 16 20 20 C 1.47266 * 119.99735 * 0.02641 * 18 17 16 21 21 C 1.46680 * 126.94278 * 0.02562 * 20 18 17 22 22 C 1.34485 * 106.33156 * 179.73769 * 21 20 18 23 23 N 1.36446 * 108.85999 * 0.24050 * 22 21 20 24 24 H 0.96998 * 124.85436 * 179.97438 * 23 22 21 25 25 C 1.34665 * 110.29435 * 359.97438 * 23 22 21 26 26 C 1.50696 * 125.79840 * 179.97438 * 25 23 22 27 27 C 1.53782 * 113.61417 * 37.47801 * 26 25 23 28 28 C 1.53779 * 87.08154 * 220.01046 * 27 26 25 29 29 C 1.53783 * 87.08192 * 25.43389 * 28 27 26 30 30 H 0.96997 * 120.00113 * 0.02562 * 1 2 3 31 31 H 1.09005 * 110.31810 * 300.90654 * 10 9 7 32 32 H 1.09008 * 110.31646 * 62.98722 * 10 9 7 33 33 H 1.09002 * 112.53568 * 191.70738 * 13 11 10 34 34 H 1.08998 * 112.31474 * 64.17158 * 13 11 10 35 35 H 1.08990 * 110.31446 * 169.86316 * 16 14 9 36 36 H 1.08997 * 110.30686 * 47.67699 * 16 14 9 37 37 H 1.08002 * 126.83670 * 0.02562 * 21 20 18 38 38 H 1.08003 * 125.57269 * 180.23948 * 22 21 20 39 39 H 1.09002 * 112.84918 * 168.78053 * 26 25 23 40 40 H 1.08996 * 113.61537 * 334.56691 * 27 26 25 41 41 H 1.09003 * 113.61535 * 105.46658 * 27 26 25 42 42 H 1.08998 * 113.62176 * 270.88260 * 28 27 26 43 43 H 1.09007 * 113.61024 * 139.97696 * 28 27 26 44 44 H 1.08997 * 113.61347 * 220.01997 * 29 28 27 45 45 H 1.08998 * 113.69390 * 89.12175 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1421 -2.5669 -0.0005 11 6 -0.3647 -4.1049 0.0498 12 1 -1.3440 -4.4356 0.3959 13 6 0.8842 -4.5252 0.9112 14 6 1.9104 -3.7616 -0.0005 15 1 2.9646 -3.8351 0.2666 16 6 1.5084 -4.3457 -1.3904 17 7 0.0518 -4.5835 -1.3017 18 6 -0.7409 -5.1188 -2.2512 19 8 -1.9312 -5.2574 -2.0428 20 6 -0.1658 -5.5360 -3.5412 21 6 1.2389 -5.4403 -3.9523 22 6 1.3032 -5.9418 -5.1985 23 7 0.0529 -6.3302 -5.5827 24 1 -0.1658 -6.7239 -6.4418 25 6 -0.8342 -6.0888 -4.5987 26 6 -2.3114 -6.3822 -4.6520 27 6 -2.6538 -7.6881 -5.3884 28 6 -3.8484 -6.9376 -6.0004 29 6 -3.0458 -5.6438 -5.7835 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5814 -2.0915 0.8765 32 1 -0.5740 -2.1518 -0.9113 33 1 1.0493 -5.6026 0.9096 34 1 0.8453 -4.1191 1.9220 35 1 2.0344 -5.2825 -1.5736 36 1 1.7272 -3.6271 -2.1803 37 1 2.0593 -5.0497 -3.3685 38 1 2.1982 -6.0238 -5.7974 39 1 -2.7972 -6.2867 -3.6810 40 1 -1.9036 -7.9860 -6.1208 41 1 -2.9437 -8.5015 -4.7231 42 1 -4.7551 -6.9950 -5.3983 43 1 -4.0207 -7.1736 -7.0505 44 1 -3.6521 -4.8068 -5.4372 45 1 -2.4024 -5.3815 -6.6233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032626007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:18 Heat of formation + Delta-G solvation = 95.041029 kcal Electronic energy + Delta-G solvation = -26994.505378 eV Core-core repulsion = 23401.311175 eV Total energy + Delta-G solvation = -3593.194202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.35251 -39.70485 -38.24751 -37.35045 -33.53089 -31.75604 -30.56814 -29.66857 -28.80681 -28.43539 -25.75385 -25.38527 -24.99166 -23.64474 -22.10078 -20.95236 -19.87667 -19.46663 -19.39465 -18.15958 -17.76224 -16.65307 -15.75335 -15.56196 -15.42268 -14.88248 -14.58610 -14.33685 -14.03878 -13.75981 -13.33634 -13.18635 -12.87299 -12.67384 -12.60914 -12.29398 -12.16782 -11.86097 -11.73429 -11.52922 -11.19542 -10.94011 -10.83073 -10.77478 -10.61564 -10.56117 -10.50353 -10.37946 -10.15319 -10.00719 -9.55997 -9.22793 -8.66519 -8.62637 -8.11230 -7.72617 -6.84195 -5.69893 -3.04099 1.98630 2.60968 3.18339 3.41370 3.45393 3.47486 3.71692 4.01842 4.46176 4.47776 4.55623 4.58091 4.88340 5.01805 5.10773 5.12420 5.29780 5.39729 5.43962 5.52417 5.52463 5.58085 5.64277 5.71701 5.73849 5.77964 5.90027 5.90926 5.93079 6.03707 6.07969 6.18784 6.32782 6.42189 6.45321 6.53919 6.63778 6.70042 6.84235 6.93551 7.12051 7.49799 7.51795 7.60855 7.79688 8.17434 8.34238 8.89731 9.17003 9.78029 10.48153 11.42012 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017865 B = 0.003622 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.957942 B = 7728.717049 C = 7803.916628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.597 5.597 10 C 0.174 3.826 11 C 0.100 3.900 12 H 0.113 0.887 13 C -0.150 4.150 14 C 0.137 3.863 15 H 0.105 0.895 16 C 0.087 3.913 17 N -0.599 5.599 18 C 0.603 3.397 19 O -0.568 6.568 20 C -0.216 4.216 21 C -0.169 4.169 22 C -0.027 4.027 23 N -0.553 5.553 24 H 0.410 0.590 25 C 0.109 3.891 26 C -0.052 4.052 27 C -0.138 4.138 28 C -0.139 4.139 29 C -0.134 4.134 30 H 0.254 0.746 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.138 0.862 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.350 -15.980 -10.945 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.322 5.322 10 C 0.049 3.951 11 C -0.002 4.002 12 H 0.130 0.870 13 C -0.190 4.190 14 C 0.028 3.972 15 H 0.123 0.877 16 C -0.039 4.039 17 N -0.331 5.331 18 C 0.394 3.606 19 O -0.450 6.450 20 C -0.225 4.225 21 C -0.193 4.193 22 C -0.153 4.153 23 N -0.148 5.148 24 H 0.246 0.754 25 C -0.008 4.008 26 C -0.071 4.071 27 C -0.176 4.176 28 C -0.177 4.177 29 C -0.172 4.172 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.172 0.828 38 H 0.183 0.817 39 H 0.156 0.844 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.103 0.897 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.058 -15.818 -11.018 19.306 hybrid contribution 0.606 0.891 -0.617 1.242 sum -0.452 -14.927 -11.636 18.931 Atomic orbital electron populations 1.69914 1.04922 1.25303 1.56426 1.24805 0.95650 0.97627 1.02165 0.86214 0.78438 0.83326 0.77828 1.21221 1.21674 1.21165 1.18998 0.90339 0.82164 1.44383 0.90271 1.45225 1.01385 0.99261 1.86286 1.21818 0.84638 0.87443 1.01226 1.24264 0.97600 0.97467 0.80889 0.86959 1.24191 0.96904 0.98830 0.99091 1.23238 0.96413 0.86330 0.91223 0.87743 1.23457 0.80382 0.98593 1.01438 1.48904 1.09193 1.59822 1.15200 1.16929 0.84903 0.76632 0.82110 1.90640 1.15103 1.58527 1.80725 1.20203 0.93920 1.12838 0.95577 1.22603 0.96095 1.04838 0.95738 1.21703 0.87699 1.07777 0.98169 1.41453 1.07373 1.50671 1.15338 0.75427 1.19973 0.91727 1.00948 0.88159 1.21592 0.87998 0.95814 1.01722 1.22990 0.98114 0.97086 0.99406 1.22813 0.97557 0.96402 1.00900 1.22962 0.98763 0.97644 0.97788 0.93610 0.92776 0.93516 0.91679 0.89953 0.92657 0.90931 0.82823 0.81659 0.84401 0.91044 0.90858 0.89658 0.91493 0.90606 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.26 10.56 55.49 0.59 -26.68 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.24 10.37 -15.06 -0.16 -6.40 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.61 16 9 N -0.60 -14.71 3.02 -156.68 -0.47 -15.18 16 10 C 0.17 4.32 4.75 -1.98 -0.01 4.31 16 11 C 0.10 2.05 5.23 -62.64 -0.33 1.72 16 12 H 0.11 2.23 8.05 -51.93 -0.42 1.81 16 13 C -0.15 -2.66 6.83 -22.10 -0.15 -2.81 16 14 C 0.14 2.62 5.53 -62.55 -0.35 2.27 16 15 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 16 C 0.09 1.56 4.38 -1.67 -0.01 1.56 16 17 N -0.60 -11.93 2.95 -158.19 -0.47 -12.40 16 18 C 0.60 12.25 7.89 -12.59 -0.10 12.15 16 19 O -0.57 -12.59 14.95 5.25 0.08 -12.52 16 20 C -0.22 -3.71 6.24 -103.35 -0.64 -4.35 16 21 C -0.17 -2.47 9.54 -37.50 -0.36 -2.82 16 22 C -0.03 -0.30 11.89 -16.83 -0.20 -0.50 16 23 N -0.55 -6.02 5.72 -9.11 -0.05 -6.07 16 24 H 0.41 3.07 8.21 -40.82 -0.34 2.74 16 25 C 0.11 1.56 6.22 -81.88 -0.51 1.05 16 26 C -0.05 -0.68 3.93 -90.96 -0.36 -1.04 16 27 C -0.14 -1.32 7.62 -25.92 -0.20 -1.52 16 28 C -0.14 -1.24 8.08 -25.92 -0.21 -1.45 16 29 C -0.13 -1.47 7.63 -25.92 -0.20 -1.67 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.05 1.47 7.46 -51.93 -0.39 1.08 16 32 H 0.05 1.34 7.67 -51.92 -0.40 0.95 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.06 0.84 6.91 -51.93 -0.36 0.48 16 36 H 0.07 1.44 7.21 -51.93 -0.37 1.07 16 37 H 0.15 2.16 4.89 -52.49 -0.26 1.91 16 38 H 0.17 1.30 8.06 -52.48 -0.42 0.87 16 39 H 0.14 2.19 5.92 -51.93 -0.31 1.88 16 40 H 0.07 0.57 7.21 -51.93 -0.37 0.19 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 LS Contribution 352.51 15.07 5.31 5.31 Total: -1.00 -33.24 352.51 -10.46 -43.70 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.56 Total: 6.64 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -3.87 Total: 0.24 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: -0.41 Total: -60.33 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.08 Total: -12.52 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.24 -10.46 -43.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032626007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.742 kcal (2) G-P(sol) polarization free energy of solvation -33.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds