Wall clock time and date at job start Tue Mar 31 2020 10:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99717 * 2 1 4 4 H 1.48504 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47391 * 299.99776 * 3 2 1 6 6 H 1.48496 * 109.47344 * 59.99712 * 3 2 1 7 7 C 1.38808 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.47870 * 126.94785 * 359.97438 * 9 7 2 11 11 C 1.58426 * 104.83440 * 182.30757 * 10 9 7 12 12 H 1.09000 * 116.63245 * 159.52100 * 11 10 9 13 13 C 1.57434 * 99.62563 * 32.32197 * 11 10 9 14 14 C 1.49296 * 126.94497 * 179.97438 * 9 7 2 15 15 H 1.09002 * 116.15037 * 15.84229 * 14 9 7 16 16 C 1.56015 * 104.09257 * 246.69761 * 14 9 7 17 17 N 1.47867 * 105.10373 * 287.92001 * 16 14 9 18 18 C 1.34776 * 126.94618 * 181.98350 * 17 16 14 19 19 O 1.21632 * 120.00289 * 180.02562 * 18 17 16 20 20 C 1.47262 * 119.99870 * 0.02562 * 18 17 16 21 21 C 1.46749 * 126.92575 * 180.02562 * 20 18 17 22 22 C 1.34061 * 106.31143 * 179.97438 * 21 20 18 23 23 N 1.37080 * 109.04433 * 0.02562 * 22 21 20 24 24 C 1.34578 * 109.94718 * 359.96422 * 23 22 21 25 25 C 1.47031 * 123.95266 * 179.97438 * 23 22 21 26 26 C 1.53140 * 108.84971 * 342.48246 * 25 23 22 27 27 C 1.53127 * 109.58102 * 51.18015 * 26 25 23 28 28 C 1.51096 * 126.72572 * 180.02562 * 22 21 20 29 29 H 0.96994 * 120.00349 * 0.02562 * 1 2 3 30 30 H 1.08999 * 110.31398 * 300.91316 * 10 9 7 31 31 H 1.08998 * 110.31164 * 62.99463 * 10 9 7 32 32 H 1.09001 * 112.53508 * 192.40867 * 13 11 10 33 33 H 1.09002 * 112.31191 * 64.87432 * 13 11 10 34 34 H 1.08998 * 110.31545 * 169.01404 * 16 14 9 35 35 H 1.08998 * 110.31870 * 46.82842 * 16 14 9 36 36 H 1.07997 * 126.84221 * 359.95976 * 21 20 18 37 37 H 1.08002 * 125.72659 * 179.97438 * 24 23 22 38 38 H 1.09009 * 109.57747 * 222.67590 * 25 23 22 39 39 H 1.08997 * 109.57935 * 102.29722 * 25 23 22 40 40 H 1.09002 * 109.45091 * 171.20965 * 26 25 23 41 41 H 1.08997 * 109.45031 * 291.15773 * 26 25 23 42 42 H 1.09003 * 109.52368 * 49.73518 * 27 26 25 43 43 H 1.08996 * 109.52464 * 169.93486 * 27 26 25 44 44 H 1.09000 * 109.71616 * 283.82231 * 28 22 21 45 45 H 1.08998 * 109.71977 * 44.42886 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1422 -2.5669 0.0005 11 6 -0.3597 -4.1349 0.0622 12 1 -1.3325 -4.4799 0.4124 13 6 0.8994 -4.5420 0.9152 14 6 1.9104 -3.7617 0.0005 15 1 2.9646 -3.8350 0.2676 16 6 1.5084 -4.3456 -1.3892 17 7 0.0554 -4.6030 -1.2933 18 6 -0.7355 -5.1452 -2.2404 19 8 -1.9226 -5.3002 -2.0258 20 6 -0.1623 -5.5501 -3.5351 21 6 -0.8777 -6.1508 -4.6668 22 6 0.0365 -6.3511 -5.6267 23 7 1.2584 -5.9225 -5.1770 24 6 1.1442 -5.4417 -3.9252 25 6 2.4951 -5.9906 -5.9693 26 6 2.2894 -6.9754 -7.1239 27 6 1.0050 -6.6204 -7.8784 28 6 -0.2044 -6.9491 -6.9932 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5813 -2.0914 0.8775 31 1 -0.5739 -2.1519 -0.9102 32 1 1.0787 -5.6171 0.9085 33 1 0.8608 -4.1402 1.9277 34 1 2.0456 -5.2749 -1.5790 35 1 1.7132 -3.6214 -2.1777 36 1 -1.9308 -6.3850 -4.7164 37 1 1.9492 -5.0388 -3.3285 38 1 3.3148 -6.3341 -5.3381 39 1 2.7281 -5.0034 -6.3684 40 1 3.1382 -6.9182 -7.8053 41 1 2.2094 -7.9876 -6.7277 42 1 1.0051 -5.5569 -8.1177 43 1 0.9507 -7.2018 -8.7988 44 1 -0.3164 -8.0299 -6.9070 45 1 -1.1064 -6.5196 -7.4289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032823708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:14 Heat of formation + Delta-G solvation = 73.626855 kcal Electronic energy + Delta-G solvation = -26840.739978 eV Core-core repulsion = 23246.617188 eV Total energy + Delta-G solvation = -3594.122790 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.47935 -39.71162 -37.43119 -35.92026 -33.56896 -32.78294 -31.57920 -29.75884 -28.61695 -28.41920 -27.41833 -25.22088 -24.66011 -23.72854 -21.88077 -21.71148 -20.06326 -19.58517 -18.77709 -18.50559 -16.99507 -16.54927 -16.00492 -15.61266 -15.45170 -14.84666 -14.49572 -14.37893 -14.03997 -13.84033 -13.77417 -13.63804 -13.13875 -12.94977 -12.73804 -12.30515 -11.87906 -11.73607 -11.68547 -11.57427 -11.39704 -11.27529 -11.20532 -11.05829 -10.92855 -10.82992 -10.67909 -10.52053 -10.15620 -10.03420 -9.61422 -9.31094 -8.68249 -8.43324 -8.03241 -7.79288 -6.89374 -5.74382 -3.09097 2.06356 2.56419 2.81808 3.37651 3.42077 3.45802 3.61780 4.07492 4.22333 4.35289 4.42691 4.43293 4.65859 4.96017 5.01259 5.05384 5.08897 5.18891 5.24447 5.35336 5.37072 5.43813 5.48709 5.55046 5.58879 5.61510 5.66946 5.75174 5.78628 5.85349 5.92307 6.08091 6.24131 6.25819 6.36613 6.48089 6.58242 6.62887 6.78968 7.01134 7.18123 7.33693 7.46406 7.58080 7.76846 8.12759 8.30608 8.91097 9.12501 9.73320 10.43460 11.37489 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.003736 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.330740 B = 7493.629633 C = 8285.492987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.231 4.231 8 H 0.081 0.919 9 N -0.597 5.597 10 C 0.176 3.824 11 C 0.098 3.902 12 H 0.114 0.886 13 C -0.151 4.151 14 C 0.140 3.860 15 H 0.104 0.896 16 C 0.082 3.918 17 N -0.605 5.605 18 C 0.601 3.399 19 O -0.562 6.562 20 C -0.216 4.216 21 C -0.138 4.138 22 C 0.003 3.997 23 N -0.444 5.444 24 C 0.041 3.959 25 C 0.101 3.899 26 C -0.133 4.133 27 C -0.125 4.125 28 C -0.049 4.049 29 H 0.253 0.747 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.144 0.856 37 H 0.179 0.821 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.366 -15.505 -12.716 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.322 5.322 10 C 0.051 3.949 11 C -0.005 4.005 12 H 0.132 0.868 13 C -0.191 4.191 14 C 0.031 3.969 15 H 0.122 0.878 16 C -0.044 4.044 17 N -0.338 5.338 18 C 0.392 3.608 19 O -0.442 6.442 20 C -0.226 4.226 21 C -0.162 4.162 22 C -0.104 4.104 23 N -0.122 5.122 24 C -0.093 4.093 25 C -0.020 4.020 26 C -0.170 4.170 27 C -0.163 4.163 28 C -0.087 4.087 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.162 0.838 37 H 0.196 0.804 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.949 -15.339 -12.881 20.895 hybrid contribution 0.517 1.091 -0.048 1.208 sum 6.466 -14.249 -12.930 20.298 Atomic orbital electron populations 1.69923 1.04931 1.25185 1.56362 1.24820 0.95665 0.97690 1.02096 0.86057 0.78627 0.83840 0.77253 1.20502 1.21826 1.21731 1.19076 0.90374 0.82068 1.44404 0.90156 1.45220 1.01514 0.99206 1.86211 1.22378 0.84428 0.86896 1.01197 1.24839 0.97510 0.97500 0.80647 0.86809 1.24179 0.96890 0.98831 0.99158 1.23165 0.96474 0.86356 0.90912 0.87833 1.23454 0.80876 0.98162 1.01918 1.48986 1.09261 1.60238 1.15312 1.16998 0.85062 0.76649 0.82053 1.90709 1.15304 1.57661 1.80568 1.20440 0.93191 1.12675 0.96291 1.21495 0.98595 1.04400 0.91751 1.20245 0.84714 1.07961 0.97521 1.43903 1.07727 1.48120 1.12403 1.22564 0.98808 1.01984 0.85976 1.22050 0.85299 1.01205 0.93417 1.21833 0.99196 0.99368 0.96630 1.21646 0.93932 1.02314 0.98380 1.20322 0.98734 1.00331 0.89265 0.93613 0.92771 0.93334 0.91581 0.89882 0.92936 0.91067 0.83795 0.80400 0.89346 0.89975 0.89732 0.90779 0.91285 0.90761 0.90360 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.07 10.56 55.49 0.59 -26.49 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.76 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.17 10.37 -15.06 -0.16 -6.32 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.60 -14.52 3.02 -154.76 -0.47 -14.98 16 10 C 0.18 4.36 4.89 -0.29 0.00 4.36 16 11 C 0.10 1.99 5.35 -60.97 -0.33 1.67 16 12 H 0.11 2.28 8.05 -51.93 -0.42 1.86 16 13 C -0.15 -2.63 6.86 -22.10 -0.15 -2.78 16 14 C 0.14 2.62 5.47 -62.55 -0.34 2.27 16 15 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 16 C 0.08 1.42 4.37 -1.68 -0.01 1.42 16 17 N -0.61 -12.07 2.95 -156.38 -0.46 -12.53 16 18 C 0.60 12.69 7.89 -12.59 -0.10 12.59 16 19 O -0.56 -13.57 17.31 5.25 0.09 -13.48 16 20 C -0.22 -3.87 6.27 -103.32 -0.65 -4.52 16 21 C -0.14 -2.21 10.88 -37.61 -0.41 -2.62 16 22 C 0.00 0.04 6.53 -81.52 -0.53 -0.49 16 23 N -0.44 -5.50 3.11 -111.87 -0.35 -5.85 16 24 C 0.04 0.60 10.06 -16.88 -0.17 0.43 16 25 C 0.10 0.83 6.89 -3.68 -0.03 0.80 16 26 C -0.13 -0.83 5.91 -26.59 -0.16 -0.99 16 27 C -0.13 -0.86 5.97 -26.44 -0.16 -1.02 16 28 C -0.05 -0.43 6.26 -27.46 -0.17 -0.60 16 29 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.05 1.47 7.46 -51.93 -0.39 1.08 16 31 H 0.05 1.39 7.67 -51.93 -0.40 0.99 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 34 H 0.05 0.75 6.94 -51.93 -0.36 0.39 16 35 H 0.07 1.35 7.23 -51.93 -0.38 0.97 16 36 H 0.14 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.18 2.39 4.51 -52.49 -0.24 2.15 16 38 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 39 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 42 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 352.82 15.07 5.32 5.32 Total: -1.00 -34.41 352.82 -10.55 -44.96 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.79 Total: 2.35 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -3.45 Total: 3.94 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.69 Total: -59.85 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.09 Total: -13.48 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.41 -10.55 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032823708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.589 kcal (2) G-P(sol) polarization free energy of solvation -34.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds