Wall clock time and date at job start Tue Mar 31 2020 10:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99717 * 2 1 4 4 H 1.48504 * 109.47361 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47391 * 299.99776 * 3 2 1 6 6 H 1.48496 * 109.47344 * 59.99712 * 3 2 1 7 7 C 1.38808 * 120.00436 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00009 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99727 * 0.02562 * 7 2 1 10 10 C 1.47870 * 126.94785 * 359.97438 * 9 7 2 11 11 C 1.58426 * 104.83440 * 182.30757 * 10 9 7 12 12 H 1.09000 * 116.63245 * 159.52100 * 11 10 9 13 13 C 1.57434 * 99.62563 * 32.32197 * 11 10 9 14 14 C 1.49296 * 126.94497 * 179.97438 * 9 7 2 15 15 H 1.09002 * 116.15037 * 15.84229 * 14 9 7 16 16 C 1.56015 * 104.09257 * 246.69761 * 14 9 7 17 17 N 1.47867 * 105.10373 * 287.92001 * 16 14 9 18 18 C 1.34776 * 126.94618 * 181.98350 * 17 16 14 19 19 O 1.21632 * 120.00289 * 180.02562 * 18 17 16 20 20 C 1.47262 * 119.99870 * 0.02562 * 18 17 16 21 21 C 1.46749 * 126.92575 * 180.02562 * 20 18 17 22 22 C 1.34061 * 106.31143 * 179.97438 * 21 20 18 23 23 N 1.37080 * 109.04433 * 0.02562 * 22 21 20 24 24 C 1.34578 * 109.94718 * 359.96422 * 23 22 21 25 25 C 1.47031 * 123.95266 * 179.97438 * 23 22 21 26 26 C 1.53140 * 108.84971 * 342.48246 * 25 23 22 27 27 C 1.53127 * 109.58102 * 51.18015 * 26 25 23 28 28 C 1.51096 * 126.72572 * 180.02562 * 22 21 20 29 29 H 0.96994 * 120.00349 * 0.02562 * 1 2 3 30 30 H 1.08999 * 110.31398 * 300.91316 * 10 9 7 31 31 H 1.08998 * 110.31164 * 62.99463 * 10 9 7 32 32 H 1.09001 * 112.53508 * 192.40867 * 13 11 10 33 33 H 1.09002 * 112.31191 * 64.87432 * 13 11 10 34 34 H 1.08998 * 110.31545 * 169.01404 * 16 14 9 35 35 H 1.08998 * 110.31870 * 46.82842 * 16 14 9 36 36 H 1.07997 * 126.84221 * 359.95976 * 21 20 18 37 37 H 1.08002 * 125.72659 * 179.97438 * 24 23 22 38 38 H 1.09009 * 109.57747 * 222.67590 * 25 23 22 39 39 H 1.08997 * 109.57935 * 102.29722 * 25 23 22 40 40 H 1.09002 * 109.45091 * 171.20965 * 26 25 23 41 41 H 1.08997 * 109.45031 * 291.15773 * 26 25 23 42 42 H 1.09003 * 109.52368 * 49.73518 * 27 26 25 43 43 H 1.08996 * 109.52464 * 169.93486 * 27 26 25 44 44 H 1.09000 * 109.71616 * 283.82231 * 28 22 21 45 45 H 1.08998 * 109.71977 * 44.42886 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 -0.1422 -2.5669 0.0005 11 6 -0.3597 -4.1349 0.0622 12 1 -1.3325 -4.4799 0.4124 13 6 0.8994 -4.5420 0.9152 14 6 1.9104 -3.7617 0.0005 15 1 2.9646 -3.8350 0.2676 16 6 1.5084 -4.3456 -1.3892 17 7 0.0554 -4.6030 -1.2933 18 6 -0.7355 -5.1452 -2.2404 19 8 -1.9226 -5.3002 -2.0258 20 6 -0.1623 -5.5501 -3.5351 21 6 -0.8777 -6.1508 -4.6668 22 6 0.0365 -6.3511 -5.6267 23 7 1.2584 -5.9225 -5.1770 24 6 1.1442 -5.4417 -3.9252 25 6 2.4951 -5.9906 -5.9693 26 6 2.2894 -6.9754 -7.1239 27 6 1.0050 -6.6204 -7.8784 28 6 -0.2044 -6.9491 -6.9932 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5813 -2.0914 0.8775 31 1 -0.5739 -2.1519 -0.9102 32 1 1.0787 -5.6171 0.9085 33 1 0.8608 -4.1402 1.9277 34 1 2.0456 -5.2749 -1.5790 35 1 1.7132 -3.6214 -2.1777 36 1 -1.9308 -6.3850 -4.7164 37 1 1.9492 -5.0388 -3.3285 38 1 3.3148 -6.3341 -5.3381 39 1 2.7281 -5.0034 -6.3684 40 1 3.1382 -6.9182 -7.8053 41 1 2.2094 -7.9876 -6.7277 42 1 1.0051 -5.5569 -8.1177 43 1 0.9507 -7.2018 -8.7988 44 1 -0.3164 -8.0299 -6.9070 45 1 -1.1064 -6.5196 -7.4289 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032823708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:14 Heat of formation + Delta-G solvation = 52.585937 kcal Electronic energy + Delta-G solvation = -26841.652381 eV Core-core repulsion = 23246.617188 eV Total energy + Delta-G solvation = -3595.035193 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.54845 -41.28995 -39.05930 -36.70504 -35.45296 -33.64429 -33.35281 -31.24465 -30.23071 -29.84211 -28.36555 -27.01678 -25.83598 -25.08609 -23.32779 -22.50326 -21.54727 -21.19969 -20.09546 -19.68946 -18.71389 -17.73776 -17.37316 -17.18876 -16.56740 -16.33054 -16.05357 -15.59336 -15.12761 -15.05847 -14.84177 -14.64146 -14.46734 -14.38606 -13.90276 -13.62529 -13.48920 -13.34262 -13.14295 -13.02681 -12.77002 -12.73797 -12.43548 -12.27232 -12.11587 -11.97334 -11.93211 -11.85281 -11.75575 -11.68453 -11.52397 -11.00496 -10.72261 -9.68756 -9.37315 -9.11925 -8.90492 -7.83259 -5.19868 0.77365 1.42676 1.46925 1.47917 1.58192 1.84246 2.14006 2.48882 2.58549 3.34265 3.40591 3.61611 3.67014 3.72934 3.82391 3.87805 3.92686 3.97664 4.06141 4.14449 4.23219 4.41313 4.45573 4.49993 4.54165 4.58560 4.67460 4.84929 4.87333 4.90628 4.91647 4.98197 5.03335 5.07626 5.12320 5.13965 5.18576 5.26068 5.33629 5.45744 5.56685 5.66222 5.79754 6.08455 6.09914 6.35964 6.73703 7.02832 7.30766 7.71520 8.42917 9.28164 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015786 B = 0.003736 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.330740 B = 7493.629633 C = 8285.492987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.074 4.074 3 Si 0.978 3.022 4 H -0.254 1.254 5 H -0.302 1.302 6 H -0.298 1.298 7 C -0.227 4.227 8 H 0.100 0.900 9 N -0.615 5.615 10 C 0.190 3.810 11 C 0.097 3.903 12 H 0.109 0.891 13 C -0.127 4.127 14 C 0.137 3.863 15 H 0.141 0.859 16 C 0.088 3.912 17 N -0.608 5.608 18 C 0.591 3.409 19 O -0.610 6.610 20 C -0.260 4.260 21 C -0.178 4.178 22 C 0.022 3.978 23 N -0.437 5.437 24 C 0.055 3.945 25 C 0.089 3.911 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.051 4.051 29 H 0.243 0.757 30 H 0.017 0.983 31 H -0.007 1.007 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.133 0.867 37 H 0.195 0.805 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.610 -17.740 -14.457 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.266 4.266 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.229 1.229 6 H -0.225 1.225 7 C -0.356 4.356 8 H 0.118 0.882 9 N -0.340 5.340 10 C 0.064 3.936 11 C -0.006 4.006 12 H 0.127 0.873 13 C -0.166 4.166 14 C 0.031 3.969 15 H 0.158 0.842 16 C -0.036 4.036 17 N -0.340 5.340 18 C 0.385 3.615 19 O -0.495 6.495 20 C -0.270 4.270 21 C -0.202 4.202 22 C -0.087 4.087 23 N -0.113 5.113 24 C -0.082 4.082 25 C -0.030 4.030 26 C -0.166 4.166 27 C -0.161 4.161 28 C -0.089 4.089 29 H 0.052 0.948 30 H 0.036 0.964 31 H 0.011 0.989 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.150 0.850 37 H 0.212 0.788 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.131 0.869 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.283 -17.622 -14.642 25.113 hybrid contribution -0.777 1.726 0.410 1.936 sum 9.505 -15.896 -14.233 23.358 Atomic orbital electron populations 1.70182 1.06792 1.25031 1.58903 1.25703 0.96355 1.01349 1.03237 0.85002 0.78684 0.79499 0.76107 1.17812 1.22947 1.22509 1.19617 0.91374 0.82916 1.41665 0.88195 1.45471 1.01353 1.01170 1.85981 1.21935 0.85094 0.89780 0.96837 1.24703 0.99286 0.94158 0.82484 0.87267 1.24093 0.93613 1.00790 0.98141 1.23607 0.98397 0.83126 0.91765 0.84163 1.23439 0.79619 0.99925 1.00577 1.49060 1.10408 1.59680 1.14809 1.17603 0.84660 0.76140 0.83132 1.90656 1.17346 1.59886 1.81570 1.20360 0.95185 1.15806 0.95648 1.21588 0.99041 1.06793 0.92815 1.20752 0.84162 1.05563 0.98213 1.44273 1.09063 1.46156 1.11768 1.22629 0.97705 1.00830 0.87003 1.22524 0.83767 1.02639 0.94074 1.21875 0.99858 0.98643 0.96180 1.21672 0.93110 1.02355 0.98926 1.20521 1.00191 1.00959 0.87207 0.94816 0.96449 0.98862 0.87884 0.89865 0.88155 0.92603 0.84954 0.78811 0.87117 0.89066 0.86856 0.90628 0.91981 0.88309 0.88790 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.88 10.56 21.65 0.23 -59.65 16 2 C -0.07 -4.21 5.49 84.86 0.47 -3.74 16 3 Si 0.98 45.49 29.55 68.60 2.03 47.52 16 4 H -0.25 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 7 C -0.23 -12.04 10.37 84.03 0.87 -11.16 16 8 H 0.10 4.81 7.83 -2.91 -0.02 4.79 16 9 N -0.62 -29.99 3.02 -643.55 -1.95 -31.94 16 10 C 0.19 9.95 4.89 88.06 0.43 10.38 16 11 C 0.10 4.07 5.35 47.95 0.26 4.33 16 12 H 0.11 4.63 8.05 -2.39 -0.02 4.61 16 13 C -0.13 -4.15 6.86 33.59 0.23 -3.92 16 14 C 0.14 4.77 5.47 46.93 0.26 5.03 16 15 H 0.14 3.91 8.14 -2.39 -0.02 3.89 16 16 C 0.09 2.90 4.37 87.16 0.38 3.28 16 17 N -0.61 -24.48 2.95 -766.90 -2.26 -26.74 16 18 C 0.59 26.00 7.89 86.62 0.68 26.69 16 19 O -0.61 -31.51 17.31 -4.13 -0.07 -31.58 16 20 C -0.26 -9.49 6.27 -19.02 -0.12 -9.61 16 21 C -0.18 -5.88 10.88 23.54 0.26 -5.63 16 22 C 0.02 0.54 6.53 40.91 0.27 0.81 16 23 N -0.44 -9.72 3.11 -507.84 -1.58 -11.30 16 24 C 0.05 1.52 10.06 83.93 0.84 2.37 16 25 C 0.09 1.09 6.89 86.32 0.59 1.68 16 26 C -0.13 -1.01 5.91 30.68 0.18 -0.83 16 27 C -0.12 -1.21 5.97 30.78 0.18 -1.03 16 28 C -0.05 -0.78 6.26 30.12 0.19 -0.59 16 29 H 0.24 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.02 1.02 7.46 -2.39 -0.02 1.00 16 31 H -0.01 -0.43 7.67 -2.39 -0.02 -0.45 16 32 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 34 H 0.10 2.40 6.94 -2.39 -0.02 2.39 16 35 H 0.06 2.03 7.23 -2.39 -0.02 2.02 16 36 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 37 H 0.20 4.61 4.51 -2.91 -0.01 4.60 16 38 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 41 H 0.08 0.63 8.11 -2.39 -0.02 0.61 16 42 H 0.06 0.73 8.12 -2.39 -0.02 0.71 16 43 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 44 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -82.60 352.82 3.36 -79.24 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.99 Total: 16.40 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 5.97 Total: 18.05 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -5.56 Total: -129.63 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -0.07 Total: -31.58 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -82.60 3.36 -79.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032823708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.828 kcal (2) G-P(sol) polarization free energy of solvation -82.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds