Wall clock time and date at job start Tue Mar 31 2020 10:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00495 * 2 1 4 4 H 1.48500 * 109.47093 * 269.99851 * 3 2 1 5 5 H 1.48497 * 109.46983 * 29.99659 * 3 2 1 6 6 H 1.48495 * 109.47183 * 149.99771 * 3 2 1 7 7 C 1.38815 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00232 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00036 * 359.97438 * 7 2 1 10 10 C 1.47670 * 134.45671 * 180.02562 * 9 7 2 11 11 C 1.53516 * 85.97702 * 204.28209 * 10 9 7 12 12 C 1.47671 * 134.45525 * 359.95444 * 9 7 2 13 13 C 1.52674 * 113.57427 * 91.01465 * 11 10 9 14 14 C 1.53339 * 109.10617 * 73.80888 * 13 11 10 15 15 N 1.46881 * 108.76286 * 52.40734 * 14 13 11 16 16 C 1.34781 * 120.46553 * 124.47312 * 15 14 13 17 17 O 1.21277 * 119.99866 * 359.97438 * 16 15 14 18 18 C 1.50694 * 119.99723 * 179.97438 * 16 15 14 19 19 C 1.50702 * 109.46850 * 179.97438 * 18 16 15 20 20 C 1.38677 * 120.41881 * 90.00003 * 19 18 16 21 21 C 1.38628 * 118.41857 * 179.97438 * 20 19 18 22 22 C 1.38215 * 119.16579 * 0.02562 * 21 20 19 23 23 N 1.31854 * 120.76332 * 359.97438 * 22 21 20 24 24 C 1.31888 * 121.72838 * 0.02562 * 23 22 21 25 25 C 1.46882 * 119.06794 * 304.73967 * 15 14 13 26 26 C 1.52668 * 113.56051 * 222.23639 * 11 10 9 27 27 H 0.97004 * 119.99314 * 0.02562 * 1 2 3 28 28 H 1.09001 * 113.79036 * 90.01870 * 10 9 7 29 29 H 1.09003 * 113.78811 * 318.54554 * 10 9 7 30 30 H 1.08998 * 113.79161 * 41.44593 * 12 9 7 31 31 H 1.09004 * 113.79129 * 269.98053 * 12 9 7 32 32 H 1.08993 * 109.53051 * 313.92089 * 13 11 10 33 33 H 1.08993 * 109.52876 * 193.69763 * 13 11 10 34 34 H 1.08998 * 109.58760 * 292.62306 * 14 13 11 35 35 H 1.09004 * 109.58681 * 172.18823 * 14 13 11 36 36 H 1.09004 * 109.47227 * 60.00373 * 18 16 15 37 37 H 1.08994 * 109.47370 * 299.99526 * 18 16 15 38 38 H 1.08003 * 120.78603 * 0.02562 * 20 19 18 39 39 H 1.08005 * 120.41354 * 179.97438 * 21 20 19 40 40 H 1.07995 * 119.62265 * 180.02562 * 22 21 20 41 41 H 1.07999 * 119.61890 * 179.97438 * 24 23 22 42 42 H 1.09009 * 109.58743 * 175.04175 * 25 15 14 43 43 H 1.08991 * 109.59351 * 295.47635 * 25 15 14 44 44 H 1.09000 * 109.53566 * 46.07799 * 26 11 10 45 45 H 1.08996 * 109.53458 * 166.30265 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 1.7212 -3.8108 0.0029 11 6 0.3474 -4.0816 -0.6266 12 6 -0.1045 -2.7566 0.0032 13 6 0.3605 -4.0605 -2.1532 14 6 1.0371 -5.3370 -2.6670 15 7 0.3914 -6.4986 -2.0414 16 6 -0.1310 -7.4816 -2.8012 17 8 -0.0703 -7.4106 -4.0104 18 6 -0.7905 -8.6688 -2.1483 19 6 -1.2879 -9.6146 -3.2110 20 6 -0.4700 -10.6280 -3.6875 21 6 -0.9698 -11.4746 -4.6649 22 6 -2.2574 -11.2816 -5.1290 23 7 -3.0069 -10.3070 -4.6527 24 6 -2.5646 -9.4828 -3.7229 25 6 0.3179 -6.5710 -0.5762 26 6 -0.3582 -5.3056 -0.0483 27 1 -0.4849 0.8401 -0.0004 28 1 1.8387 -4.2336 1.0006 29 1 2.5592 -4.0347 -0.6572 30 1 -0.7176 -2.1426 -0.6564 31 1 -0.5291 -2.8665 1.0011 32 1 0.9150 -3.1890 -2.5008 33 1 -0.6628 -4.0152 -2.5257 34 1 2.0947 -5.3212 -2.4041 35 1 0.9283 -5.3977 -3.7499 36 1 -1.6307 -8.3299 -1.5421 37 1 -0.0683 -9.1823 -1.5137 38 1 0.5322 -10.7552 -3.3057 39 1 -0.3605 -12.2744 -5.0593 40 1 -2.6543 -11.9370 -5.8900 41 1 -3.2077 -8.6959 -3.3574 42 1 -0.2645 -7.4443 -0.2822 43 1 1.3237 -6.6439 -0.1629 44 1 -0.2940 -5.2833 1.0396 45 1 -1.4048 -5.3007 -0.3528 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035688973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:04 Heat of formation + Delta-G solvation = 56.231238 kcal Electronic energy + Delta-G solvation = -26103.316237 eV Core-core repulsion = 22508.439116 eV Total energy + Delta-G solvation = -3594.877121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.74660 -39.99404 -38.64787 -35.78356 -33.85383 -32.51942 -32.14113 -31.10720 -30.52252 -28.17426 -26.73514 -25.05417 -23.77772 -23.69926 -23.39089 -22.30449 -21.19628 -19.48496 -17.76055 -17.30349 -16.83714 -16.74219 -16.60495 -16.00509 -15.27784 -14.99972 -14.84581 -14.66752 -14.09566 -13.81880 -13.79563 -13.59190 -13.36145 -13.31384 -13.24574 -12.50459 -12.39330 -12.36839 -12.07174 -11.75645 -11.70652 -11.12173 -11.05380 -10.87468 -10.84850 -10.37369 -10.19545 -10.07995 -9.84433 -9.72335 -9.64881 -9.57109 -9.36856 -9.12790 -8.79292 -8.46759 -6.86483 -5.76626 -3.08388 0.88877 1.09296 2.59842 3.01581 3.38506 3.43432 3.45258 3.64389 4.18956 4.44046 4.45546 4.53321 4.55434 4.73894 4.78031 4.88199 5.00926 5.09163 5.15139 5.19513 5.28208 5.32259 5.42523 5.47848 5.51354 5.56168 5.67315 5.84408 5.87473 5.89709 5.93606 6.01475 6.15812 6.25219 6.28414 6.41650 6.48556 6.59956 6.62766 6.79094 6.85723 7.23032 7.36836 7.44282 7.58410 7.78108 7.99106 8.16841 9.05281 9.71461 10.61386 11.40331 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.036905 B = 0.002501 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.522480 B =11193.815240 C =11243.663463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.222 4.222 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.126 3.874 11 C -0.108 4.108 12 C 0.173 3.827 13 C -0.096 4.096 14 C 0.113 3.887 15 N -0.604 5.604 16 C 0.514 3.486 17 O -0.541 6.541 18 C -0.099 4.099 19 C -0.114 4.114 20 C -0.062 4.062 21 C -0.172 4.172 22 C 0.093 3.907 23 N -0.485 5.485 24 C 0.114 3.886 25 C 0.108 3.892 26 C -0.120 4.120 27 H 0.253 0.747 28 H 0.031 0.969 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.025 0.975 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.104 0.896 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.185 -22.844 -3.144 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.349 4.349 8 H 0.096 0.904 9 N -0.335 5.335 10 C 0.000 4.000 11 C -0.110 4.110 12 C 0.048 3.952 13 C -0.134 4.134 14 C -0.008 4.008 15 N -0.338 5.338 16 C 0.302 3.698 17 O -0.418 6.418 18 C -0.139 4.139 19 C -0.116 4.116 20 C -0.089 4.089 21 C -0.192 4.192 22 C -0.063 4.063 23 N -0.193 5.193 24 C -0.043 4.043 25 C -0.015 4.015 26 C -0.159 4.159 27 H 0.063 0.937 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.042 0.958 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.122 0.878 38 H 0.149 0.851 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.952 -22.324 -4.111 22.890 hybrid contribution 1.422 0.968 0.677 1.849 sum -1.530 -21.356 -3.434 21.684 Atomic orbital electron populations 1.69817 1.04976 1.25257 1.56781 1.24764 0.95642 0.97445 1.02614 0.86157 0.78583 0.83625 0.77617 1.21557 1.21691 1.20769 1.19001 0.90195 0.82099 1.43635 0.90435 1.45959 1.02367 0.99181 1.86017 1.22591 0.94393 0.86650 0.96344 1.22392 0.97932 0.95534 0.95121 1.22237 0.88079 0.88377 0.96525 1.21481 1.00924 0.96849 0.94155 1.21700 0.96233 0.84253 0.98660 1.48135 1.57428 1.21234 1.06964 1.20395 0.78545 0.83578 0.87299 1.90712 1.58344 1.78696 1.14080 1.20650 1.02178 0.93973 0.97142 1.20340 0.95681 0.96649 0.98934 1.21434 0.99158 0.93299 0.94965 1.22095 0.97494 1.01039 0.98601 1.22747 0.91014 0.94818 0.97765 1.67689 1.37250 1.04146 1.10194 1.22619 0.93369 0.96320 0.92029 1.21722 1.01547 0.99018 0.79202 1.21758 0.99657 0.93925 1.00534 0.93697 0.95178 0.94207 0.91009 0.95767 0.89493 0.92134 0.91469 0.89435 0.87458 0.87766 0.85051 0.84843 0.82908 0.82967 0.90264 0.91066 0.90573 0.91735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.06 11.39 55.49 0.63 -26.43 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.22 -6.11 10.70 -15.06 -0.16 -6.27 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.66 16 9 N -0.61 -15.05 3.53 -179.73 -0.63 -15.68 16 10 C 0.13 2.40 7.72 -3.14 -0.02 2.38 16 11 C -0.11 -1.84 0.77 -154.41 -0.12 -1.96 16 12 C 0.17 3.89 6.64 -3.15 -0.02 3.87 16 13 C -0.10 -1.60 5.22 -26.72 -0.14 -1.74 16 14 C 0.11 1.63 6.30 -3.66 -0.02 1.61 16 15 N -0.60 -7.49 2.95 -172.95 -0.51 -8.00 16 16 C 0.51 6.52 7.69 -10.99 -0.08 6.43 16 17 O -0.54 -9.06 15.42 5.56 0.09 -8.97 16 18 C -0.10 -0.85 4.19 -29.04 -0.12 -0.97 16 19 C -0.11 -1.16 4.39 -104.48 -0.46 -1.61 16 20 C -0.06 -0.58 9.86 -39.28 -0.39 -0.96 16 21 C -0.17 -1.47 10.11 -39.45 -0.40 -1.87 16 22 C 0.09 0.90 11.18 -17.55 -0.20 0.70 16 23 N -0.48 -5.81 10.36 -13.26 -0.14 -5.95 16 24 C 0.11 1.27 10.86 -17.55 -0.19 1.08 16 25 C 0.11 1.09 6.19 -3.90 -0.02 1.07 16 26 C -0.12 -1.52 5.24 -26.97 -0.14 -1.66 16 27 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.03 0.55 8.07 -51.93 -0.42 0.13 16 29 H 0.04 0.73 7.41 -51.93 -0.38 0.35 16 30 H 0.07 1.82 7.12 -51.93 -0.37 1.45 16 31 H 0.02 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.09 1.69 8.01 -51.93 -0.42 1.27 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.94 7.49 -51.93 -0.39 0.55 16 35 H 0.09 1.35 6.98 -51.93 -0.36 0.99 16 36 H 0.11 0.72 7.66 -51.93 -0.40 0.32 16 37 H 0.10 0.64 7.87 -51.93 -0.41 0.23 16 38 H 0.13 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 41 H 0.15 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.08 0.56 5.89 -51.92 -0.31 0.25 16 43 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 44 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -34.28 362.54 -9.51 -43.79 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.80 Total: -1.01 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -2.59 Total: -0.24 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.65 Total: -56.06 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.28 -9.51 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035688973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.021 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds