Wall clock time and date at job start Tue Mar 31 2020 10:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99994 * 2 1 4 4 H 1.48493 * 109.47085 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47310 * 300.00558 * 3 2 1 6 6 H 1.48505 * 109.46619 * 60.00362 * 3 2 1 7 7 C 1.38814 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99728 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.47740 * 125.97424 * 0.02562 * 9 7 2 11 11 C 1.55071 * 104.87504 * 157.70516 * 10 9 7 12 12 C 1.56008 * 101.16950 * 36.82834 * 11 10 9 13 13 H 1.08999 * 110.86342 * 204.44161 * 12 11 10 14 14 C 1.52043 * 107.46914 * 83.32722 * 12 11 10 15 15 N 1.46123 * 111.67383 * 208.66754 * 14 12 11 16 16 C 1.34770 * 120.93552 * 232.43231 * 15 14 12 17 17 O 1.21293 * 119.99984 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00405 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.47626 * 180.02562 * 18 16 15 20 20 C 1.38677 * 120.41537 * 270.26209 * 19 18 16 21 21 C 1.38625 * 118.42126 * 180.22222 * 20 19 18 22 22 C 1.38223 * 119.15978 * 359.46985 * 21 20 19 23 23 N 1.31856 * 120.76567 * 0.30777 * 22 21 20 24 24 C 1.31884 * 121.72562 * 359.97275 * 23 22 21 25 25 C 1.47067 * 118.13232 * 52.70243 * 15 14 12 26 26 C 1.53099 * 107.54377 * 300.90043 * 25 15 14 27 27 C 1.46513 * 125.97606 * 180.02562 * 9 7 2 28 28 H 1.08999 * 106.02572 * 291.67789 * 27 9 7 29 29 H 0.97006 * 120.00314 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.35660 * 38.86152 * 10 9 7 31 31 H 1.08994 * 110.35845 * 276.55498 * 10 9 7 32 32 H 1.08997 * 111.08134 * 278.85377 * 11 10 9 33 33 H 1.08996 * 111.08462 * 154.80185 * 11 10 9 34 34 H 1.09005 * 109.03773 * 88.10877 * 14 12 11 35 35 H 1.08995 * 109.04338 * 329.23782 * 14 12 11 36 36 H 1.08993 * 109.47255 * 59.99261 * 18 16 15 37 37 H 1.09007 * 109.46622 * 299.99552 * 18 16 15 38 38 H 1.08003 * 120.78603 * 359.97006 * 20 19 18 39 39 H 1.08002 * 120.42343 * 179.75479 * 21 20 19 40 40 H 1.08005 * 119.61951 * 180.28273 * 22 21 20 41 41 H 1.07998 * 119.61861 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.79660 * 60.48856 * 25 15 14 43 43 H 1.08997 * 109.79857 * 181.34095 * 25 15 14 44 44 H 1.09003 * 109.00961 * 291.79852 * 26 25 15 45 45 H 1.09000 * 108.82120 * 173.28899 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1438 -2.5418 -0.0005 11 6 -0.3954 -3.9624 -0.5691 12 6 0.7996 -4.7515 0.0496 13 1 1.0392 -5.6281 -0.5523 14 6 0.3968 -5.1598 1.4577 15 7 1.5573 -5.2796 2.3376 16 6 1.7686 -6.3996 3.0569 17 8 0.9897 -7.3261 2.9794 18 6 2.9721 -6.5004 3.9583 19 6 2.9758 -7.8428 4.6432 20 6 2.3357 -8.0110 5.8618 21 6 2.3690 -9.2623 6.4574 22 6 3.0250 -10.2962 5.8161 23 7 3.6191 -10.1009 4.6553 24 6 3.6124 -8.9229 4.0623 25 6 2.4848 -4.1414 2.4210 26 6 3.0222 -3.8798 1.0114 27 6 1.9220 -3.7262 -0.0005 28 1 2.3980 -3.8435 -0.9741 29 1 -0.4851 0.8401 0.0004 30 1 -0.6038 -1.7898 -0.6417 31 1 -0.5331 -2.4652 1.0146 32 1 -0.3444 -3.9636 -1.6579 33 1 -1.3492 -4.3601 -0.2227 34 1 -0.1183 -6.1195 1.4160 35 1 -0.2822 -4.4106 1.8647 36 1 2.9321 -5.7099 4.7075 37 1 3.8803 -6.3931 3.3650 38 1 1.8268 -7.1856 6.3374 39 1 1.8845 -9.4285 7.4083 40 1 3.0516 -11.2753 6.2713 41 1 4.1097 -8.8012 3.1113 42 1 1.9567 -3.2608 2.7866 43 1 3.3080 -4.3844 3.0928 44 1 3.6609 -4.7118 0.7149 45 1 3.6183 -2.9674 1.0261 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036691659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:37 Heat of formation + Delta-G solvation = 31.890688 kcal Electronic energy + Delta-G solvation = -26602.569669 eV Core-core repulsion = 23006.637062 eV Total energy + Delta-G solvation = -3595.932606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.64348 -39.84750 -38.23026 -35.16598 -33.77642 -32.83094 -32.04550 -31.76221 -29.61937 -28.45446 -27.39257 -25.21274 -24.00830 -23.71264 -22.65594 -22.38312 -20.19559 -19.64383 -18.15282 -17.24567 -17.09730 -16.62743 -16.45550 -16.00412 -15.23625 -15.10440 -14.86377 -14.46271 -14.01702 -13.97518 -13.58819 -13.47234 -13.24318 -13.19215 -12.93546 -12.58330 -12.21606 -12.12929 -11.80076 -11.71242 -11.32376 -11.19285 -11.09071 -10.82959 -10.62953 -10.20771 -10.15881 -10.01712 -9.97766 -9.70068 -9.68276 -9.59930 -9.54120 -9.06504 -8.69536 -8.31254 -6.86868 -5.72617 -3.12171 0.94867 1.15303 2.71407 3.16046 3.34468 3.40098 3.42740 3.71379 4.25495 4.42255 4.51932 4.62069 4.67270 4.81886 4.84913 5.10595 5.15242 5.23262 5.25910 5.26293 5.38247 5.44912 5.51006 5.53580 5.60980 5.68011 5.81843 5.89774 5.93948 6.08738 6.10141 6.17794 6.26526 6.29532 6.38788 6.52718 6.54851 6.65493 6.71070 6.86991 6.93401 7.45894 7.57595 7.62359 7.80314 7.82887 8.28534 8.29131 9.15312 9.77575 10.44267 11.33019 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.003034 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.694265 B = 9225.536212 C = 9700.334835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.009 4.009 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.594 5.594 10 C 0.156 3.844 11 C -0.142 4.142 12 C -0.104 4.104 13 H 0.071 0.929 14 C 0.124 3.876 15 N -0.601 5.601 16 C 0.515 3.485 17 O -0.546 6.546 18 C -0.099 4.099 19 C -0.111 4.111 20 C -0.062 4.062 21 C -0.172 4.172 22 C 0.092 3.908 23 N -0.485 5.485 24 C 0.113 3.887 25 C 0.112 3.888 26 C -0.137 4.137 27 C 0.172 3.828 28 H 0.012 0.988 29 H 0.251 0.749 30 H 0.100 0.900 31 H 0.013 0.987 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.051 0.949 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.271 -13.606 9.813 17.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.031 3.969 11 C -0.182 4.182 12 C -0.124 4.124 13 H 0.089 0.911 14 C 0.002 3.998 15 N -0.333 5.333 16 C 0.303 3.697 17 O -0.424 6.424 18 C -0.139 4.139 19 C -0.114 4.114 20 C -0.088 4.088 21 C -0.192 4.192 22 C -0.065 4.065 23 N -0.193 5.193 24 C -0.044 4.044 25 C -0.010 4.010 26 C -0.177 4.177 27 C 0.064 3.936 28 H 0.030 0.970 29 H 0.062 0.938 30 H 0.118 0.882 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.171 0.829 41 H 0.170 0.830 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.249 -14.554 9.349 18.077 hybrid contribution 0.015 1.764 0.418 1.813 sum 5.263 -12.790 9.767 16.932 Atomic orbital electron populations 1.69844 1.04887 1.24723 1.57344 1.24765 0.95668 0.97627 1.02468 0.86055 0.78654 0.83845 0.77260 1.20550 1.21799 1.21827 1.19011 0.90440 0.82244 1.43155 0.90415 1.44552 1.01757 0.99252 1.86293 1.21911 0.84743 0.91871 0.98357 1.23303 0.95822 0.99022 1.00004 1.21883 0.97588 0.97547 0.95359 0.91051 1.21213 0.87098 1.02155 0.89377 1.47976 1.26795 1.15375 1.43143 1.20346 0.86761 0.81938 0.80681 1.90697 1.47582 1.37890 1.66246 1.20638 0.98607 0.95516 0.99174 1.20352 0.99222 0.96138 0.95665 1.21451 0.95427 0.97699 0.94237 1.22093 1.01436 0.93980 1.01698 1.22734 0.93460 0.99060 0.91215 1.67679 1.17887 1.23917 1.09862 1.22594 0.95821 0.87432 0.98573 1.21789 0.92297 0.88711 0.98201 1.21684 0.99377 1.01656 0.94944 1.19528 0.91681 0.86569 0.95815 0.97043 0.93784 0.88223 0.96938 0.91881 0.92071 0.89955 0.91295 0.87712 0.87526 0.85003 0.84851 0.82940 0.83027 0.90109 0.90581 0.93002 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.71 10.17 55.49 0.56 -25.14 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.22 -5.66 9.62 -15.06 -0.14 -5.80 16 8 H 0.08 1.93 7.09 -52.49 -0.37 1.55 16 9 N -0.59 -13.91 3.29 -165.47 -0.54 -14.45 16 10 C 0.16 3.57 5.50 -2.27 -0.01 3.55 16 11 C -0.14 -2.60 6.39 -24.03 -0.15 -2.75 16 12 C -0.10 -1.78 3.45 -89.95 -0.31 -2.09 16 13 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.12 2.04 5.63 -4.73 -0.03 2.01 16 15 N -0.60 -8.98 2.93 -174.05 -0.51 -9.49 16 16 C 0.52 7.44 7.70 -10.99 -0.08 7.35 16 17 O -0.55 -9.80 15.45 5.55 0.09 -9.71 16 18 C -0.10 -1.02 4.21 -29.04 -0.12 -1.15 16 19 C -0.11 -1.26 4.39 -104.48 -0.46 -1.72 16 20 C -0.06 -0.65 9.86 -39.28 -0.39 -1.03 16 21 C -0.17 -1.61 10.11 -39.44 -0.40 -2.01 16 22 C 0.09 0.95 11.18 -17.55 -0.20 0.75 16 23 N -0.49 -6.10 10.36 -13.25 -0.14 -6.24 16 24 C 0.11 1.35 10.86 -17.55 -0.19 1.16 16 25 C 0.11 1.59 6.45 -3.68 -0.02 1.57 16 26 C -0.14 -2.19 5.62 -28.04 -0.16 -2.35 16 27 C 0.17 3.30 2.69 -69.74 -0.19 3.11 16 28 H 0.01 0.24 8.09 -51.93 -0.42 -0.18 16 29 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.10 2.61 6.04 -51.93 -0.31 2.30 16 31 H 0.01 0.31 7.44 -51.93 -0.39 -0.08 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 1.00 7.94 -51.93 -0.41 0.58 16 34 H 0.08 1.37 6.98 -51.93 -0.36 1.01 16 35 H 0.07 1.22 6.80 -51.93 -0.35 0.86 16 36 H 0.10 0.88 7.81 -51.93 -0.41 0.47 16 37 H 0.11 0.90 7.77 -51.93 -0.40 0.49 16 38 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.08 0.80 5.97 -51.93 -0.31 0.49 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 1.40 6.82 -51.93 -0.35 1.04 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -31.61 354.08 -9.79 -41.40 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -6.61 Total: 1.98 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -2.95 Total: 0.24 kcal Atomic # 7 Polarization: -54.70 SS G_CDS: -0.63 Total: -55.32 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.61 -9.79 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036691659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.291 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds