Wall clock time and date at job start Tue Mar 31 2020 10:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86804 * 119.99994 * 2 1 4 4 H 1.48493 * 109.47085 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47310 * 300.00558 * 3 2 1 6 6 H 1.48505 * 109.46619 * 60.00362 * 3 2 1 7 7 C 1.38814 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99728 * 179.97438 * 7 2 1 9 9 N 1.36928 * 120.00016 * 359.97438 * 7 2 1 10 10 C 1.47740 * 125.97424 * 0.02562 * 9 7 2 11 11 C 1.55071 * 104.87504 * 157.70516 * 10 9 7 12 12 C 1.56008 * 101.16950 * 36.82834 * 11 10 9 13 13 H 1.08999 * 110.86342 * 204.44161 * 12 11 10 14 14 C 1.52043 * 107.46914 * 83.32722 * 12 11 10 15 15 N 1.46123 * 111.67383 * 208.66754 * 14 12 11 16 16 C 1.34770 * 120.93552 * 232.43231 * 15 14 12 17 17 O 1.21293 * 119.99984 * 359.97438 * 16 15 14 18 18 C 1.50697 * 120.00405 * 180.02562 * 16 15 14 19 19 C 1.50700 * 109.47626 * 180.02562 * 18 16 15 20 20 C 1.38677 * 120.41537 * 270.26209 * 19 18 16 21 21 C 1.38625 * 118.42126 * 180.22222 * 20 19 18 22 22 C 1.38223 * 119.15978 * 359.46985 * 21 20 19 23 23 N 1.31856 * 120.76567 * 0.30777 * 22 21 20 24 24 C 1.31884 * 121.72562 * 359.97275 * 23 22 21 25 25 C 1.47067 * 118.13232 * 52.70243 * 15 14 12 26 26 C 1.53099 * 107.54377 * 300.90043 * 25 15 14 27 27 C 1.46513 * 125.97606 * 180.02562 * 9 7 2 28 28 H 1.08999 * 106.02572 * 291.67789 * 27 9 7 29 29 H 0.97006 * 120.00314 * 359.97438 * 1 2 3 30 30 H 1.08998 * 110.35660 * 38.86152 * 10 9 7 31 31 H 1.08994 * 110.35845 * 276.55498 * 10 9 7 32 32 H 1.08997 * 111.08134 * 278.85377 * 11 10 9 33 33 H 1.08996 * 111.08462 * 154.80185 * 11 10 9 34 34 H 1.09005 * 109.03773 * 88.10877 * 14 12 11 35 35 H 1.08995 * 109.04338 * 329.23782 * 14 12 11 36 36 H 1.08993 * 109.47255 * 59.99261 * 18 16 15 37 37 H 1.09007 * 109.46622 * 299.99552 * 18 16 15 38 38 H 1.08003 * 120.78603 * 359.97006 * 20 19 18 39 39 H 1.08002 * 120.42343 * 179.75479 * 21 20 19 40 40 H 1.08005 * 119.61951 * 180.28273 * 22 21 20 41 41 H 1.07998 * 119.61861 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.79660 * 60.48856 * 25 15 14 43 43 H 1.08997 * 109.79857 * 181.34095 * 25 15 14 44 44 H 1.09003 * 109.00961 * 291.79852 * 26 25 15 45 45 H 1.09000 * 108.82120 * 173.28899 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0901 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1438 -2.5418 -0.0005 11 6 -0.3954 -3.9624 -0.5691 12 6 0.7996 -4.7515 0.0496 13 1 1.0392 -5.6281 -0.5523 14 6 0.3968 -5.1598 1.4577 15 7 1.5573 -5.2796 2.3376 16 6 1.7686 -6.3996 3.0569 17 8 0.9897 -7.3261 2.9794 18 6 2.9721 -6.5004 3.9583 19 6 2.9758 -7.8428 4.6432 20 6 2.3357 -8.0110 5.8618 21 6 2.3690 -9.2623 6.4574 22 6 3.0250 -10.2962 5.8161 23 7 3.6191 -10.1009 4.6553 24 6 3.6124 -8.9229 4.0623 25 6 2.4848 -4.1414 2.4210 26 6 3.0222 -3.8798 1.0114 27 6 1.9220 -3.7262 -0.0005 28 1 2.3980 -3.8435 -0.9741 29 1 -0.4851 0.8401 0.0004 30 1 -0.6038 -1.7898 -0.6417 31 1 -0.5331 -2.4652 1.0146 32 1 -0.3444 -3.9636 -1.6579 33 1 -1.3492 -4.3601 -0.2227 34 1 -0.1183 -6.1195 1.4160 35 1 -0.2822 -4.4106 1.8647 36 1 2.9321 -5.7099 4.7075 37 1 3.8803 -6.3931 3.3650 38 1 1.8268 -7.1856 6.3374 39 1 1.8845 -9.4285 7.4083 40 1 3.0516 -11.2753 6.2713 41 1 4.1097 -8.8012 3.1113 42 1 1.9567 -3.2608 2.7866 43 1 3.3080 -4.3844 3.0928 44 1 3.6609 -4.7118 0.7149 45 1 3.6183 -2.9674 1.0261 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036691659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:36 Heat of formation + Delta-G solvation = 13.212010 kcal Electronic energy + Delta-G solvation = -26603.379637 eV Core-core repulsion = 23006.637062 eV Total energy + Delta-G solvation = -3596.742575 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68494 -40.89088 -39.59007 -36.58263 -34.82947 -34.35405 -33.25811 -32.80406 -31.20831 -29.74983 -28.63364 -26.78259 -25.53379 -24.48042 -24.01895 -23.28420 -21.92718 -20.88427 -19.55911 -18.48146 -18.07530 -17.96174 -17.41529 -17.19632 -16.86359 -16.22300 -16.05019 -15.81813 -15.59804 -15.14604 -14.58235 -14.55134 -14.44683 -14.25222 -14.01259 -13.92256 -13.76015 -13.29211 -13.10568 -12.98176 -12.89784 -12.70943 -12.53315 -12.36130 -12.17495 -11.91686 -11.65533 -11.59463 -11.39975 -11.22258 -10.97788 -10.67992 -10.63588 -10.38697 -9.87194 -9.59581 -8.78608 -7.73228 -5.13664 0.18001 0.38854 1.49459 1.50617 1.59828 1.61867 2.03687 2.52987 2.90421 3.38490 3.51286 3.57974 3.71438 3.75661 3.81076 3.92410 3.96083 4.01070 4.10421 4.13964 4.23682 4.28599 4.42633 4.49954 4.55884 4.60433 4.61900 4.74647 4.78733 4.80708 4.89259 4.94416 4.99639 5.11191 5.16781 5.21111 5.33612 5.38152 5.42728 5.54158 5.58300 5.67832 5.81644 5.86006 6.34030 6.48233 7.05523 7.15811 7.16384 7.85073 8.51501 9.31407 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.003034 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.694265 B = 9225.536212 C = 9700.334835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.069 4.069 3 Si 0.972 3.028 4 H -0.263 1.263 5 H -0.299 1.299 6 H -0.296 1.296 7 C -0.218 4.218 8 H 0.087 0.913 9 N -0.610 5.610 10 C 0.162 3.838 11 C -0.131 4.131 12 C -0.094 4.094 13 H 0.090 0.910 14 C 0.130 3.870 15 N -0.602 5.602 16 C 0.516 3.484 17 O -0.583 6.583 18 C -0.091 4.091 19 C -0.123 4.123 20 C -0.075 4.075 21 C -0.171 4.171 22 C 0.080 3.920 23 N -0.515 5.515 24 C 0.094 3.906 25 C 0.120 3.880 26 C -0.133 4.133 27 C 0.166 3.834 28 H 0.000 1.000 29 H 0.243 0.757 30 H 0.062 0.938 31 H -0.011 1.011 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.130 0.870 37 H 0.133 0.867 38 H 0.148 0.852 39 H 0.162 0.838 40 H 0.177 0.823 41 H 0.160 0.840 42 H 0.054 0.946 43 H 0.122 0.878 44 H 0.080 0.920 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.106 -14.912 11.171 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.227 1.227 6 H -0.224 1.224 7 C -0.347 4.347 8 H 0.104 0.896 9 N -0.335 5.335 10 C 0.036 3.964 11 C -0.170 4.170 12 C -0.113 4.113 13 H 0.109 0.891 14 C 0.007 3.993 15 N -0.334 5.334 16 C 0.307 3.693 17 O -0.464 6.464 18 C -0.131 4.131 19 C -0.125 4.125 20 C -0.100 4.100 21 C -0.190 4.190 22 C -0.076 4.076 23 N -0.223 5.223 24 C -0.063 4.063 25 C -0.002 4.002 26 C -0.173 4.173 27 C 0.060 3.940 28 H 0.018 0.982 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.006 0.994 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.069 0.931 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.166 0.834 39 H 0.180 0.820 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.098 0.902 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.127 -15.886 10.712 20.443 hybrid contribution -0.577 2.081 0.003 2.160 sum 6.550 -13.805 10.715 18.663 Atomic orbital electron populations 1.70091 1.06241 1.24627 1.59227 1.25531 0.96432 1.00696 1.03499 0.85083 0.78409 0.80017 0.76295 1.18724 1.22702 1.22385 1.19373 0.91025 0.83182 1.41146 0.89570 1.44783 1.02138 1.00463 1.86140 1.21634 0.84651 0.93685 0.96390 1.23164 0.97583 0.96250 0.99965 1.21831 0.96032 0.97383 0.96083 0.89127 1.20994 0.87739 1.01367 0.89191 1.48005 1.26358 1.15959 1.43036 1.21037 0.87323 0.80757 0.80229 1.90685 1.49226 1.39086 1.67360 1.20691 0.97304 0.95932 0.99150 1.20477 0.99546 0.96348 0.96173 1.21811 0.95259 0.98726 0.94255 1.22440 1.00662 0.93337 1.02574 1.23235 0.93049 1.00547 0.90786 1.67673 1.19073 1.24522 1.11076 1.22827 0.96554 0.87713 0.99159 1.21787 0.93011 0.87632 0.97802 1.21594 0.98206 1.02301 0.95203 1.19771 0.92914 0.84949 0.96413 0.98222 0.94716 0.91983 0.99353 0.91679 0.90050 0.90001 0.93135 0.85159 0.84915 0.83426 0.82005 0.80596 0.82307 0.92748 0.85972 0.90188 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.23 10.17 21.65 0.22 -55.01 16 2 C -0.07 -3.76 5.49 84.86 0.47 -3.29 16 3 Si 0.97 43.95 29.55 68.60 2.03 45.97 16 4 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 7 C -0.22 -11.28 9.62 84.04 0.81 -10.47 16 8 H 0.09 4.21 7.09 -2.91 -0.02 4.19 16 9 N -0.61 -28.90 3.29 -677.43 -2.23 -31.13 16 10 C 0.16 7.65 5.50 86.85 0.48 8.12 16 11 C -0.13 -4.75 6.39 32.35 0.21 -4.54 16 12 C -0.09 -3.09 3.45 -10.36 -0.04 -3.13 16 13 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 14 C 0.13 4.15 5.63 86.13 0.48 4.64 16 15 N -0.60 -16.66 2.93 -822.97 -2.42 -19.07 16 16 C 0.52 13.58 7.70 87.66 0.67 14.25 16 17 O -0.58 -19.99 15.45 -3.07 -0.05 -20.03 16 18 C -0.09 -1.55 4.21 29.10 0.12 -1.43 16 19 C -0.12 -2.48 4.39 -19.77 -0.09 -2.57 16 20 C -0.07 -1.36 9.86 22.47 0.22 -1.14 16 21 C -0.17 -2.76 10.11 22.36 0.23 -2.53 16 22 C 0.08 1.50 11.18 84.69 0.95 2.44 16 23 N -0.51 -12.26 10.36 -195.84 -2.03 -14.29 16 24 C 0.09 2.09 10.86 84.67 0.92 3.01 16 25 C 0.12 3.07 6.45 86.30 0.56 3.63 16 26 C -0.13 -3.96 5.62 29.74 0.17 -3.80 16 27 C 0.17 6.20 2.69 43.81 0.12 6.31 16 28 H 0.00 0.00 8.09 -2.39 -0.02 -0.02 16 29 H 0.24 13.87 8.31 -92.70 -0.77 13.10 16 30 H 0.06 3.42 6.04 -2.39 -0.01 3.41 16 31 H -0.01 -0.59 7.44 -2.39 -0.02 -0.61 16 32 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.61 7.94 -2.39 -0.02 2.59 16 34 H 0.08 2.63 6.98 -2.38 -0.02 2.62 16 35 H 0.05 1.79 6.80 -2.39 -0.02 1.78 16 36 H 0.13 1.59 7.81 -2.39 -0.02 1.57 16 37 H 0.13 1.60 7.77 -2.38 -0.02 1.58 16 38 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.18 2.19 8.06 -2.91 -0.02 2.17 16 41 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.12 2.01 5.97 -2.39 -0.01 2.00 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 2.27 6.82 -2.39 -0.02 2.26 16 Total: -1.00 -71.19 354.08 2.79 -68.40 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.99 Total: 15.66 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 6.27 Total: 9.51 kcal Atomic # 7 Polarization: -113.06 SS G_CDS: -6.45 Total: -119.51 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: -0.05 Total: -20.03 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.19 2.79 -68.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036691659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.609 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds