Wall clock time and date at job start Tue Mar 31 2020 10:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99480 * 2 1 4 4 H 1.48499 * 109.46739 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47237 * 299.99538 * 3 2 1 6 6 H 1.48496 * 109.47390 * 59.99984 * 3 2 1 7 7 C 1.38807 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00209 * 359.97438 * 7 2 1 10 10 C 1.48151 * 126.40392 * 359.97438 * 9 7 2 11 11 C 1.55288 * 107.04635 * 175.10030 * 10 9 7 12 12 C 1.53749 * 101.83930 * 337.52100 * 11 10 9 13 13 H 1.08995 * 111.30135 * 280.15859 * 12 11 10 14 14 C 1.52246 * 114.74913 * 152.76134 * 12 11 10 15 15 N 1.47717 * 106.35476 * 189.45843 * 14 12 11 16 16 C 1.34780 * 119.68018 * 232.05919 * 15 14 12 17 17 O 1.21280 * 120.00423 * 359.97438 * 16 15 14 18 18 C 1.50701 * 119.99795 * 180.02562 * 16 15 14 19 19 C 1.50703 * 109.47064 * 179.97438 * 18 16 15 20 20 C 1.38672 * 120.41759 * 269.71910 * 19 18 16 21 21 C 1.38625 * 118.42259 * 179.78105 * 20 19 18 22 22 C 1.38227 * 119.15599 * 0.47430 * 21 20 19 23 23 N 1.31851 * 120.76511 * 359.76701 * 22 21 20 24 24 C 1.31881 * 121.72912 * 0.02562 * 23 22 21 25 25 C 1.46589 * 120.63291 * 52.33061 * 15 14 12 26 26 C 1.54371 * 110.35136 * 311.82193 * 25 15 14 27 27 C 1.46155 * 125.88421 * 179.06033 * 9 7 2 28 28 H 1.08996 * 108.64748 * 93.64918 * 27 9 7 29 29 H 0.96998 * 120.00274 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.92362 * 55.75552 * 10 9 7 31 31 H 1.09004 * 110.09064 * 294.54024 * 10 9 7 32 32 H 1.08996 * 110.96097 * 219.38370 * 11 10 9 33 33 H 1.09005 * 110.98987 * 95.66814 * 11 10 9 34 34 H 1.08996 * 110.06861 * 70.24578 * 14 12 11 35 35 H 1.09001 * 110.16273 * 308.71636 * 14 12 11 36 36 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 37 37 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 38 38 H 1.08010 * 120.79118 * 0.02562 * 20 19 18 39 39 H 1.08005 * 120.42346 * 180.21973 * 21 20 19 40 40 H 1.08001 * 119.61762 * 179.78996 * 22 21 20 41 41 H 1.08001 * 119.61772 * 180.02562 * 24 23 22 42 42 H 1.09002 * 109.25674 * 72.19360 * 25 15 14 43 43 H 1.09007 * 109.25693 * 191.62247 * 25 15 14 44 44 H 1.09004 * 110.04468 * 291.81612 * 26 25 15 45 45 H 1.09000 * 109.86111 * 170.71777 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 -0.1466 -2.5534 0.0028 11 6 -0.4340 -4.0742 -0.1231 12 6 0.8681 -4.5898 -0.7577 13 1 0.8840 -4.4078 -1.8322 14 6 1.2010 -6.0410 -0.4398 15 7 2.5736 -6.2710 -0.9348 16 6 2.8229 -7.3144 -1.7507 17 8 1.9224 -8.0594 -2.0748 18 6 4.2207 -7.5560 -2.2593 19 6 4.2293 -8.7755 -3.1447 20 6 4.4661 -10.0317 -2.6072 21 6 4.4600 -11.1256 -3.4587 22 6 4.2297 -10.9280 -4.8072 23 7 4.0131 -9.7180 -5.2842 24 6 4.0076 -8.6553 -4.5033 25 6 3.6684 -5.3786 -0.5423 26 6 3.2504 -3.9038 -0.7245 27 6 1.9228 -3.7219 -0.0172 28 1 2.0202 -4.0746 1.0096 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5807 -2.0221 -0.8442 31 1 -0.5654 -2.1722 0.9342 32 1 -1.2858 -4.2571 -0.7780 33 1 -0.5946 -4.5237 0.8569 34 1 0.5032 -6.7052 -0.9499 35 1 1.1582 -6.2093 0.6363 36 1 4.5543 -6.6896 -2.8305 37 1 4.8920 -7.7153 -1.4155 38 1 4.6469 -10.1554 -1.5495 39 1 4.6371 -12.1191 -3.0740 40 1 4.2267 -11.7745 -5.4778 41 1 3.8260 -7.6801 -4.9303 42 1 3.9210 -5.5576 0.5029 43 1 4.5406 -5.5852 -1.1626 44 1 3.1402 -3.6749 -1.7845 45 1 3.9999 -3.2489 -0.2801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036691661.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:43 Heat of formation + Delta-G solvation = 10.752266 kcal Electronic energy + Delta-G solvation = -26286.790051 eV Core-core repulsion = 22689.940814 eV Total energy + Delta-G solvation = -3596.849237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66165 -40.85699 -39.54969 -36.76751 -34.77530 -34.31730 -32.97371 -32.80059 -31.44477 -29.99233 -28.55170 -26.63901 -25.01613 -24.47845 -23.76578 -23.18980 -21.86708 -21.18952 -20.00628 -18.66177 -17.98999 -17.84551 -17.43297 -17.01148 -16.80678 -16.30761 -15.99671 -15.72695 -15.60392 -15.12323 -14.77485 -14.62527 -14.33956 -14.17337 -13.96186 -13.88209 -13.81774 -13.35340 -13.16256 -13.10321 -13.00280 -12.70938 -12.45892 -12.41897 -12.04713 -11.95036 -11.76933 -11.59782 -11.50177 -11.03702 -10.92292 -10.71100 -10.62150 -10.37720 -9.86795 -9.66342 -8.86222 -7.82075 -5.16400 0.18401 0.40034 1.47109 1.47597 1.57525 1.63421 2.01240 2.51610 2.90496 3.36940 3.43832 3.52809 3.68933 3.76801 3.87800 3.93583 3.96337 4.02990 4.11511 4.15078 4.24555 4.25831 4.42407 4.50526 4.52807 4.58339 4.66572 4.73791 4.76289 4.84747 4.86824 4.92474 4.94766 5.06341 5.09394 5.21870 5.25366 5.33628 5.48072 5.56028 5.58158 5.66623 5.77235 5.82479 6.21697 6.43213 7.06372 7.10699 7.17797 7.81063 8.49085 9.30133 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025922 B = 0.002812 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.922754 B = 9953.444567 C =10401.222449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.074 4.074 3 Si 0.974 3.026 4 H -0.259 1.259 5 H -0.298 1.298 6 H -0.297 1.297 7 C -0.225 4.225 8 H 0.091 0.909 9 N -0.617 5.617 10 C 0.184 3.816 11 C -0.123 4.123 12 C -0.109 4.109 13 H 0.059 0.941 14 C 0.135 3.865 15 N -0.609 5.609 16 C 0.513 3.487 17 O -0.584 6.584 18 C -0.092 4.092 19 C -0.123 4.123 20 C -0.071 4.071 21 C -0.170 4.170 22 C 0.078 3.922 23 N -0.518 5.518 24 C 0.089 3.911 25 C 0.117 3.883 26 C -0.126 4.126 27 C 0.156 3.844 28 H 0.024 0.976 29 H 0.243 0.757 30 H 0.013 0.987 31 H 0.004 0.996 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.140 0.860 38 H 0.155 0.845 39 H 0.164 0.836 40 H 0.175 0.825 41 H 0.154 0.846 42 H 0.088 0.912 43 H 0.121 0.879 44 H 0.054 0.946 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.766 -20.820 -2.304 24.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.226 1.226 6 H -0.224 1.224 7 C -0.354 4.354 8 H 0.109 0.891 9 N -0.342 5.342 10 C 0.059 3.941 11 C -0.162 4.162 12 C -0.129 4.129 13 H 0.077 0.923 14 C 0.012 3.988 15 N -0.341 5.341 16 C 0.303 3.697 17 O -0.464 6.464 18 C -0.132 4.132 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.189 4.189 22 C -0.079 4.079 23 N -0.226 5.226 24 C -0.067 4.067 25 C -0.006 4.006 26 C -0.165 4.165 27 C 0.049 3.951 28 H 0.042 0.958 29 H 0.053 0.947 30 H 0.032 0.968 31 H 0.022 0.978 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.146 0.854 37 H 0.158 0.842 38 H 0.173 0.827 39 H 0.182 0.818 40 H 0.192 0.808 41 H 0.171 0.829 42 H 0.106 0.894 43 H 0.139 0.861 44 H 0.073 0.927 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.140 -20.874 -3.339 24.377 hybrid contribution -0.329 1.564 0.792 1.784 sum 11.811 -19.310 -2.547 22.779 Atomic orbital electron populations 1.70180 1.06455 1.24932 1.59147 1.25647 0.96503 1.01078 1.03427 0.85064 0.78558 0.79792 0.76312 1.18331 1.22551 1.22423 1.19488 0.91142 0.83358 1.41405 0.89141 1.44711 1.02031 1.01041 1.86414 1.21249 0.83837 0.91515 0.97472 1.22575 0.97015 0.95636 1.00942 1.22447 0.96368 0.94995 0.99095 0.92263 1.21415 0.83190 0.94475 0.99680 1.48390 1.09797 1.27920 1.47965 1.21103 0.91565 0.79721 0.77360 1.90695 1.48507 1.47966 1.59219 1.20745 0.93687 0.97566 1.01220 1.20500 1.00998 0.96014 0.95019 1.21832 0.94824 0.91624 1.01444 1.22462 1.00838 1.01172 0.94459 1.23233 0.94894 0.94723 0.95002 1.67649 1.13636 1.00342 1.41018 1.22799 0.95391 0.97833 0.90716 1.22033 0.88792 0.87022 1.02715 1.21910 0.97323 0.96740 1.00492 1.21021 0.93386 0.84733 0.95944 0.95817 0.94727 0.96828 0.97784 0.90794 0.90347 0.90087 0.89920 0.85400 0.84190 0.82739 0.81835 0.80778 0.82919 0.89395 0.86106 0.92701 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.98 10.44 21.65 0.23 -57.75 16 2 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 3 Si 0.97 45.15 29.55 68.60 2.03 47.18 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 7 C -0.22 -12.04 9.89 84.03 0.83 -11.21 16 8 H 0.09 4.50 7.27 -2.91 -0.02 4.48 16 9 N -0.62 -30.44 3.37 -668.33 -2.25 -32.69 16 10 C 0.18 9.11 5.46 86.85 0.47 9.58 16 11 C -0.12 -4.49 6.56 31.63 0.21 -4.29 16 12 C -0.11 -3.67 2.81 -9.98 -0.03 -3.70 16 13 H 0.06 2.23 8.11 -2.39 -0.02 2.21 16 14 C 0.14 3.70 5.95 85.90 0.51 4.21 16 15 N -0.61 -14.12 2.99 -817.19 -2.45 -16.56 16 16 C 0.51 12.07 7.67 87.66 0.67 12.74 16 17 O -0.58 -18.95 15.39 -3.03 -0.05 -18.99 16 18 C -0.09 -1.34 4.18 29.10 0.12 -1.22 16 19 C -0.12 -2.30 4.39 -19.77 -0.09 -2.39 16 20 C -0.07 -1.14 9.86 22.47 0.22 -0.92 16 21 C -0.17 -2.51 10.11 22.36 0.23 -2.29 16 22 C 0.08 1.43 11.18 84.69 0.95 2.37 16 23 N -0.52 -12.47 10.36 -195.85 -2.03 -14.50 16 24 C 0.09 2.00 10.86 84.67 0.92 2.92 16 25 C 0.12 2.16 6.23 86.83 0.54 2.70 16 26 C -0.13 -3.59 5.56 30.58 0.17 -3.42 16 27 C 0.16 5.74 2.61 45.39 0.12 5.86 16 28 H 0.02 0.89 7.92 -2.39 -0.02 0.87 16 29 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 30 H 0.01 0.76 7.21 -2.39 -0.02 0.74 16 31 H 0.00 0.22 7.77 -2.38 -0.02 0.20 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.08 2.56 8.12 -2.38 -0.02 2.54 16 34 H 0.08 2.40 7.00 -2.39 -0.02 2.38 16 35 H 0.08 2.05 8.08 -2.39 -0.02 2.04 16 36 H 0.13 1.38 7.51 -2.39 -0.02 1.36 16 37 H 0.14 1.07 7.93 -2.39 -0.02 1.05 16 38 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 39 H 0.16 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.18 2.15 8.06 -2.91 -0.02 2.12 16 41 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 42 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.12 1.33 5.83 -2.38 -0.01 1.31 16 44 H 0.05 1.72 8.11 -2.38 -0.02 1.70 16 45 H 0.08 2.23 7.67 -2.39 -0.02 2.21 16 Total: -1.00 -76.94 357.60 2.77 -74.17 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.98 Total: 11.91 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 6.31 Total: 7.24 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -6.50 Total: -121.51 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.05 Total: -18.99 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -76.94 2.77 -74.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036691661.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.925 kcal (2) G-P(sol) polarization free energy of solvation -76.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds