Wall clock time and date at job start Tue Mar 31 2020 11:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00240 * 2 1 4 4 H 1.48501 * 109.47086 * 274.13956 * 3 2 1 5 5 H 1.48498 * 109.46975 * 34.14212 * 3 2 1 6 6 H 1.48501 * 109.46896 * 154.14160 * 3 2 1 7 7 C 1.38815 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00707 * 170.38206 * 7 2 1 9 9 N 1.36942 * 119.99839 * 350.38400 * 7 2 1 10 10 C 1.47568 * 125.67246 * 350.11042 * 9 7 2 11 11 C 1.55181 * 105.00705 * 203.82387 * 10 9 7 12 12 C 1.53644 * 101.42015 * 324.50891 * 11 10 9 13 13 C 1.53662 * 111.42196 * 272.73251 * 12 11 10 14 14 C 1.55438 * 101.30985 * 204.77330 * 13 12 11 15 15 N 1.47560 * 104.88096 * 35.82686 * 14 13 12 16 16 C 1.34777 * 125.67205 * 156.03358 * 15 14 13 17 17 O 1.21780 * 120.00056 * 179.69068 * 16 15 14 18 18 C 1.41524 * 120.00040 * 359.68571 * 16 15 14 19 19 C 1.35614 * 119.99886 * 180.02562 * 18 16 15 20 20 C 1.41673 * 119.99777 * 180.02562 * 19 18 16 21 21 C 1.38289 * 126.25711 * 180.02562 * 20 19 18 22 22 C 1.39787 * 107.07661 * 179.97438 * 21 20 19 23 23 C 1.35504 * 107.90859 * 359.97438 * 22 21 20 24 24 N 1.35753 * 108.91431 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.69382 * 180.02562 * 24 23 22 26 26 C 1.47406 * 108.65440 * 335.76461 * 15 14 13 27 27 C 1.47396 * 125.67698 * 170.06857 * 9 7 2 28 28 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.33308 * 322.70921 * 10 9 7 30 30 H 1.09000 * 110.33259 * 84.83954 * 10 9 7 31 31 H 1.08993 * 111.03593 * 206.47101 * 11 10 9 32 32 H 1.09005 * 111.03171 * 82.53905 * 11 10 9 33 33 H 1.09003 * 111.03018 * 322.99960 * 13 12 11 34 34 H 1.08994 * 111.03584 * 86.89354 * 13 12 11 35 35 H 1.08997 * 110.48587 * 276.93566 * 14 13 12 36 36 H 1.09001 * 110.29926 * 154.62319 * 14 13 12 37 37 H 1.07996 * 119.99933 * 0.02562 * 18 16 15 38 38 H 1.07996 * 120.00181 * 359.97438 * 19 18 16 39 39 H 1.08002 * 126.46208 * 359.97438 * 21 20 19 40 40 H 1.07991 * 126.04520 * 180.02562 * 22 21 20 41 41 H 1.08000 * 125.53990 * 180.26262 * 23 22 21 42 42 H 1.08999 * 109.98375 * 121.72382 * 26 15 14 43 43 H 1.08994 * 109.98345 * 242.99385 * 26 15 14 44 44 H 1.09003 * 109.98518 * 58.57469 * 27 9 7 45 45 H 1.09004 * 109.98601 * 297.26809 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4102 2.0969 -1.3964 5 1 1.4943 2.6258 0.7858 6 1 3.5888 1.4164 0.6107 7 6 2.0103 -1.2021 0.0005 8 1 3.0789 -1.2089 -0.1557 9 7 1.3400 -2.3797 0.1992 10 6 -0.0670 -2.5077 0.6254 11 6 -0.1621 -3.9108 1.2813 12 6 0.8064 -4.7218 0.4067 13 6 0.0975 -5.3000 -0.8280 14 6 1.0003 -6.5228 -1.1532 15 7 1.4277 -7.0386 0.1616 16 6 1.8234 -8.3008 0.4199 17 8 2.1613 -8.6144 1.5470 18 6 1.8462 -9.2618 -0.6189 19 6 2.2439 -10.5319 -0.3589 20 6 2.2672 -11.4937 -1.3988 21 6 2.6472 -12.8181 -1.2796 22 6 2.5175 -13.3978 -2.5450 23 6 2.0708 -12.4433 -3.3968 24 7 1.9148 -11.2811 -2.7128 25 1 1.6060 -10.4412 -3.0870 26 6 1.3560 -5.9421 1.1442 27 6 1.9036 -3.7301 0.0220 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3150 -1.7328 1.3507 30 1 -0.7310 -2.4451 -0.2367 31 1 -1.1754 -4.3065 1.2136 32 1 0.1766 -3.8822 2.3170 33 1 -0.9183 -5.6122 -0.5854 34 1 0.0988 -4.5848 -1.6505 35 1 1.8662 -6.2127 -1.7381 36 1 0.4309 -7.2810 -1.6907 37 1 1.5469 -8.9835 -1.6185 38 1 2.5436 -10.8100 0.6407 39 1 2.9813 -13.3114 -0.3788 40 1 2.7340 -14.4249 -2.7986 41 1 1.8679 -12.5852 -4.4481 42 1 0.6876 -6.2164 1.9604 43 1 2.3506 -5.7258 1.5341 44 1 2.7687 -3.8610 0.6722 45 1 2.1929 -3.8795 -1.0182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041238557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:50 Heat of formation + Delta-G solvation = 61.040797 kcal Electronic energy + Delta-G solvation = -25572.215311 eV Core-core repulsion = 21977.546748 eV Total energy + Delta-G solvation = -3594.668563 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46031 -40.32459 -38.56318 -35.67946 -34.04510 -32.71674 -31.43651 -30.51214 -29.43403 -29.02010 -28.08659 -25.77975 -24.42987 -22.76840 -22.71745 -20.99174 -20.57922 -20.38713 -19.04820 -18.56617 -18.04172 -16.96387 -16.49714 -15.89218 -15.42226 -14.77427 -14.67603 -14.46066 -14.26216 -14.15331 -13.96911 -13.80004 -13.07707 -12.93690 -12.73152 -12.56030 -12.43622 -12.30017 -12.16482 -11.92210 -11.51926 -11.41576 -11.28483 -10.83780 -10.79271 -10.55435 -10.23195 -10.08309 -9.99122 -9.86658 -9.76989 -9.65248 -9.34493 -8.60514 -8.56356 -7.95681 -6.81527 -5.76403 -3.08438 0.43280 2.19833 2.70652 2.84571 3.12365 3.38274 3.44534 3.45892 3.46640 4.46524 4.50405 4.65295 4.69764 4.79173 4.85882 4.97958 4.98415 5.08108 5.24806 5.31938 5.40300 5.45599 5.49903 5.59461 5.73638 5.78408 5.80343 5.93079 5.96763 6.00403 6.05438 6.17363 6.23435 6.33928 6.34465 6.51294 6.54013 6.62140 6.64928 6.72371 6.82634 7.08691 7.48456 7.56173 7.61158 7.76898 8.23353 8.24082 9.17883 9.79513 10.47431 11.36745 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.002318 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.981357 B =12078.906168 C =12332.306564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.228 4.228 8 H 0.075 0.925 9 N -0.603 5.603 10 C 0.175 3.825 11 C -0.132 4.132 12 C -0.081 4.081 13 C -0.114 4.114 14 C 0.100 3.900 15 N -0.613 5.613 16 C 0.565 3.435 17 O -0.555 6.555 18 C -0.238 4.238 19 C 0.023 3.977 20 C 0.006 3.994 21 C -0.144 4.144 22 C -0.208 4.208 23 C 0.014 3.986 24 N -0.544 5.544 25 H 0.417 0.583 26 C 0.125 3.875 27 C 0.151 3.849 28 H 0.253 0.747 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.115 0.885 38 H 0.150 0.850 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.168 0.832 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 -23.523 -6.503 24.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.093 0.907 9 N -0.329 5.329 10 C 0.051 3.949 11 C -0.171 4.171 12 C -0.082 4.082 13 C -0.151 4.151 14 C -0.023 4.023 15 N -0.346 5.346 16 C 0.358 3.642 17 O -0.437 6.437 18 C -0.260 4.260 19 C 0.003 3.997 20 C -0.104 4.104 21 C -0.169 4.169 22 C -0.232 4.232 23 C -0.122 4.122 24 N -0.138 5.138 25 H 0.255 0.745 26 C 0.003 3.997 27 C 0.025 3.975 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.133 0.867 38 H 0.168 0.832 39 H 0.162 0.838 40 H 0.158 0.842 41 H 0.186 0.814 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.043 0.957 45 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 0.603 -23.365 -5.962 24.121 hybrid contribution 0.256 1.350 -0.489 1.458 sum 0.859 -22.015 -6.451 22.957 Atomic orbital electron populations 1.69950 1.04948 1.25164 1.56489 1.24809 0.95629 0.97785 1.02181 0.86141 0.78800 0.83563 0.77486 1.21655 1.21614 1.20609 1.19013 0.91140 0.82807 1.42675 0.90707 1.44602 1.09388 0.99631 1.79304 1.21444 0.85723 0.90947 0.96831 1.22864 0.96985 0.98729 0.98556 1.21526 0.97351 0.93752 0.95583 1.22681 0.97958 0.95865 0.98640 1.22512 0.98322 0.96325 0.85118 1.48596 1.65332 1.09418 1.11282 1.16552 0.77842 0.81157 0.88665 1.90827 1.49684 1.79509 1.23663 1.21765 1.09964 0.94730 0.99512 1.20841 0.90592 0.90694 0.97607 1.18310 1.11703 0.95991 0.84421 1.21549 1.04302 0.92334 0.98697 1.20898 1.09156 0.99791 0.93404 1.22080 1.06107 0.85542 0.98435 1.42214 1.51500 1.11785 1.08350 0.74517 1.21876 1.01428 0.84985 0.91437 1.21138 0.93310 0.85549 0.97475 0.93728 0.91410 0.95438 0.91852 0.91818 0.90697 0.89136 0.91134 0.91179 0.86741 0.83212 0.83757 0.84178 0.81436 0.91259 0.91169 0.95657 0.95879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.61 10.68 55.49 0.59 -26.02 16 2 C -0.01 -0.21 5.40 -17.43 -0.09 -0.30 16 3 Si 0.91 21.95 29.56 -169.99 -5.03 16.92 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.30 10.24 -15.06 -0.15 -6.46 16 8 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 9 N -0.60 -15.09 3.41 -170.40 -0.58 -15.68 16 10 C 0.18 4.10 5.37 -2.30 -0.01 4.09 16 11 C -0.13 -2.39 5.93 -25.24 -0.15 -2.54 16 12 C -0.08 -1.35 0.61 -154.02 -0.09 -1.44 16 13 C -0.11 -1.57 5.87 -25.09 -0.15 -1.72 16 14 C 0.10 1.18 6.46 -2.17 -0.01 1.17 16 15 N -0.61 -8.75 3.34 -174.13 -0.58 -9.34 16 16 C 0.56 8.33 7.61 -15.01 -0.11 8.22 16 17 O -0.56 -10.07 16.44 5.12 0.08 -9.98 16 18 C -0.24 -2.62 8.90 -39.27 -0.35 -2.97 16 19 C 0.02 0.24 9.40 -39.21 -0.37 -0.13 16 20 C 0.01 0.05 6.74 -83.90 -0.57 -0.51 16 21 C -0.14 -1.22 10.86 -38.98 -0.42 -1.65 16 22 C -0.21 -1.53 10.81 -39.98 -0.43 -1.96 16 23 C 0.01 0.09 11.90 -16.79 -0.20 -0.11 16 24 N -0.54 -3.83 5.94 -10.56 -0.06 -3.90 16 25 H 0.42 2.05 7.87 -40.82 -0.32 1.73 16 26 C 0.13 1.97 6.13 -3.64 -0.02 1.95 16 27 C 0.15 3.07 6.39 -3.64 -0.02 3.05 16 28 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.07 1.79 6.95 -51.93 -0.36 1.42 16 30 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 31 H 0.06 1.01 7.78 -51.93 -0.40 0.60 16 32 H 0.06 1.14 8.09 -51.93 -0.42 0.72 16 33 H 0.07 0.96 7.82 -51.93 -0.41 0.56 16 34 H 0.09 1.35 7.94 -51.93 -0.41 0.94 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.64 7.12 -51.93 -0.37 0.27 16 37 H 0.11 0.96 5.61 -52.49 -0.29 0.67 16 38 H 0.15 1.59 7.46 -52.49 -0.39 1.20 16 39 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.14 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.17 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.07 1.09 7.86 -51.93 -0.41 0.69 16 43 H 0.07 1.18 7.42 -51.93 -0.39 0.79 16 44 H 0.03 0.53 7.44 -51.93 -0.39 0.14 16 45 H 0.02 0.47 7.78 -51.93 -0.40 0.07 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -33.50 362.97 -9.89 -43.39 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.62 Total: 0.44 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -3.16 Total: -1.32 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.63 Total: -54.92 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.50 -9.89 -43.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041238557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.433 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds