Wall clock time and date at job start Tue Mar 31 2020 11:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86805 * 120.00240 * 2 1 4 4 H 1.48501 * 109.47086 * 274.13956 * 3 2 1 5 5 H 1.48498 * 109.46975 * 34.14212 * 3 2 1 6 6 H 1.48501 * 109.46896 * 154.14160 * 3 2 1 7 7 C 1.38815 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00707 * 170.38206 * 7 2 1 9 9 N 1.36942 * 119.99839 * 350.38400 * 7 2 1 10 10 C 1.47568 * 125.67246 * 350.11042 * 9 7 2 11 11 C 1.55181 * 105.00705 * 203.82387 * 10 9 7 12 12 C 1.53644 * 101.42015 * 324.50891 * 11 10 9 13 13 C 1.53662 * 111.42196 * 272.73251 * 12 11 10 14 14 C 1.55438 * 101.30985 * 204.77330 * 13 12 11 15 15 N 1.47560 * 104.88096 * 35.82686 * 14 13 12 16 16 C 1.34777 * 125.67205 * 156.03358 * 15 14 13 17 17 O 1.21780 * 120.00056 * 179.69068 * 16 15 14 18 18 C 1.41524 * 120.00040 * 359.68571 * 16 15 14 19 19 C 1.35614 * 119.99886 * 180.02562 * 18 16 15 20 20 C 1.41673 * 119.99777 * 180.02562 * 19 18 16 21 21 C 1.38289 * 126.25711 * 180.02562 * 20 19 18 22 22 C 1.39787 * 107.07661 * 179.97438 * 21 20 19 23 23 C 1.35504 * 107.90859 * 359.97438 * 22 21 20 24 24 N 1.35753 * 108.91431 * 0.02562 * 23 22 21 25 25 H 0.97001 * 125.69382 * 180.02562 * 24 23 22 26 26 C 1.47406 * 108.65440 * 335.76461 * 15 14 13 27 27 C 1.47396 * 125.67698 * 170.06857 * 9 7 2 28 28 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 29 29 H 1.09000 * 110.33308 * 322.70921 * 10 9 7 30 30 H 1.09000 * 110.33259 * 84.83954 * 10 9 7 31 31 H 1.08993 * 111.03593 * 206.47101 * 11 10 9 32 32 H 1.09005 * 111.03171 * 82.53905 * 11 10 9 33 33 H 1.09003 * 111.03018 * 322.99960 * 13 12 11 34 34 H 1.08994 * 111.03584 * 86.89354 * 13 12 11 35 35 H 1.08997 * 110.48587 * 276.93566 * 14 13 12 36 36 H 1.09001 * 110.29926 * 154.62319 * 14 13 12 37 37 H 1.07996 * 119.99933 * 0.02562 * 18 16 15 38 38 H 1.07996 * 120.00181 * 359.97438 * 19 18 16 39 39 H 1.08002 * 126.46208 * 359.97438 * 21 20 19 40 40 H 1.07991 * 126.04520 * 180.02562 * 22 21 20 41 41 H 1.08000 * 125.53990 * 180.26262 * 23 22 21 42 42 H 1.08999 * 109.98375 * 121.72382 * 26 15 14 43 43 H 1.08994 * 109.98345 * 242.99385 * 26 15 14 44 44 H 1.09003 * 109.98518 * 58.57469 * 27 9 7 45 45 H 1.09004 * 109.98601 * 297.26809 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4102 2.0969 -1.3964 5 1 1.4943 2.6258 0.7858 6 1 3.5888 1.4164 0.6107 7 6 2.0103 -1.2021 0.0005 8 1 3.0789 -1.2089 -0.1557 9 7 1.3400 -2.3797 0.1992 10 6 -0.0670 -2.5077 0.6254 11 6 -0.1621 -3.9108 1.2813 12 6 0.8064 -4.7218 0.4067 13 6 0.0975 -5.3000 -0.8280 14 6 1.0003 -6.5228 -1.1532 15 7 1.4277 -7.0386 0.1616 16 6 1.8234 -8.3008 0.4199 17 8 2.1613 -8.6144 1.5470 18 6 1.8462 -9.2618 -0.6189 19 6 2.2439 -10.5319 -0.3589 20 6 2.2672 -11.4937 -1.3988 21 6 2.6472 -12.8181 -1.2796 22 6 2.5175 -13.3978 -2.5450 23 6 2.0708 -12.4433 -3.3968 24 7 1.9148 -11.2811 -2.7128 25 1 1.6060 -10.4412 -3.0870 26 6 1.3560 -5.9421 1.1442 27 6 1.9036 -3.7301 0.0220 28 1 -0.4850 0.8400 -0.0004 29 1 -0.3150 -1.7328 1.3507 30 1 -0.7310 -2.4451 -0.2367 31 1 -1.1754 -4.3065 1.2136 32 1 0.1766 -3.8822 2.3170 33 1 -0.9183 -5.6122 -0.5854 34 1 0.0988 -4.5848 -1.6505 35 1 1.8662 -6.2127 -1.7381 36 1 0.4309 -7.2810 -1.6907 37 1 1.5469 -8.9835 -1.6185 38 1 2.5436 -10.8100 0.6407 39 1 2.9813 -13.3114 -0.3788 40 1 2.7340 -14.4249 -2.7986 41 1 1.8679 -12.5852 -4.4481 42 1 0.6876 -6.2164 1.9604 43 1 2.3506 -5.7258 1.5341 44 1 2.7687 -3.8610 0.6722 45 1 2.1929 -3.8795 -1.0182 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041238557.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:50 Heat of formation + Delta-G solvation = 40.582505 kcal Electronic energy + Delta-G solvation = -25573.102449 eV Core-core repulsion = 21977.546748 eV Total energy + Delta-G solvation = -3595.555701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.04762 -41.51224 -39.88149 -37.19482 -34.88298 -34.48096 -32.14255 -31.98496 -30.77223 -30.22767 -29.20819 -27.43911 -25.79116 -24.12435 -23.62783 -22.25841 -21.60186 -21.18392 -20.29591 -19.66906 -18.86965 -18.72810 -17.55593 -16.99460 -16.79667 -16.50623 -16.03221 -15.68634 -15.37934 -15.14570 -14.86473 -14.61794 -14.35426 -14.17398 -13.99576 -13.77856 -13.58712 -13.28419 -13.17600 -13.14514 -12.94449 -12.93590 -12.74914 -12.69875 -12.41810 -12.01583 -11.81519 -11.56210 -11.48930 -11.31031 -11.29130 -11.04619 -10.67010 -9.89152 -9.70626 -8.85579 -8.60170 -7.88792 -5.22440 -0.34266 1.45149 1.46720 1.56144 1.56211 2.02824 2.04704 2.35849 2.48601 2.54385 3.27343 3.43529 3.53151 3.62465 3.77748 3.91759 3.98262 4.19836 4.24655 4.34755 4.38203 4.41544 4.45102 4.53290 4.61612 4.63070 4.72627 4.74987 4.84627 4.89617 4.96349 5.01057 5.05406 5.12434 5.22057 5.30664 5.33395 5.37015 5.44465 5.46300 5.61354 5.75299 5.94901 6.07397 6.19951 6.54224 6.64119 7.08414 7.14520 7.75565 8.42522 9.23040 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.002318 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.981357 B =12078.906168 C =12332.306564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.062 4.062 3 Si 0.975 3.025 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.244 4.244 8 H 0.075 0.925 9 N -0.624 5.624 10 C 0.182 3.818 11 C -0.118 4.118 12 C -0.071 4.071 13 C -0.109 4.109 14 C 0.105 3.895 15 N -0.615 5.615 16 C 0.561 3.439 17 O -0.602 6.602 18 C -0.257 4.257 19 C 0.043 3.957 20 C -0.024 4.024 21 C -0.149 4.149 22 C -0.229 4.229 23 C 0.032 3.968 24 N -0.539 5.539 25 H 0.428 0.572 26 C 0.132 3.868 27 C 0.150 3.850 28 H 0.248 0.752 29 H 0.029 0.971 30 H 0.007 0.993 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.204 0.796 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.018 0.982 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 -25.723 -8.597 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.256 4.256 3 Si 0.803 3.197 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.373 4.373 8 H 0.093 0.907 9 N -0.351 5.351 10 C 0.057 3.943 11 C -0.156 4.156 12 C -0.072 4.072 13 C -0.147 4.147 14 C -0.017 4.017 15 N -0.347 5.347 16 C 0.357 3.643 17 O -0.487 6.487 18 C -0.279 4.279 19 C 0.023 3.977 20 C -0.134 4.134 21 C -0.175 4.175 22 C -0.253 4.253 23 C -0.104 4.104 24 N -0.134 5.134 25 H 0.268 0.732 26 C 0.008 3.992 27 C 0.025 3.975 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.025 0.975 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.126 0.874 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.168 0.832 40 H 0.174 0.826 41 H 0.221 0.779 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.036 0.964 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.568 -25.567 -8.078 26.819 hybrid contribution 0.326 1.874 0.105 1.905 sum 0.893 -23.694 -7.973 25.015 Atomic orbital electron populations 1.70135 1.06218 1.25475 1.57542 1.25611 0.96525 1.00922 1.02494 0.85127 0.77754 0.79380 0.77422 1.21132 1.21911 1.19732 1.19351 0.91515 0.84248 1.42157 0.90722 1.44892 1.10091 1.00711 1.79395 1.21228 0.84751 0.92970 0.95309 1.22729 0.99100 0.95587 0.98233 1.21358 0.95919 0.93057 0.96842 1.22662 0.99056 0.96322 0.96645 1.22628 0.98549 0.96356 0.84167 1.48630 1.65345 1.08974 1.11766 1.17107 0.76844 0.81503 0.88855 1.90799 1.51990 1.80231 1.25687 1.21636 1.12564 0.93982 0.99699 1.20818 0.88602 0.90809 0.97518 1.18207 1.14024 0.95973 0.85209 1.21885 1.03406 0.92477 0.99736 1.21239 1.09877 1.01060 0.93102 1.22730 1.03276 0.84648 0.99744 1.42271 1.50895 1.12631 1.07606 0.73243 1.21631 1.00442 0.85246 0.91843 1.21259 0.94276 0.84455 0.97509 0.94235 0.95232 0.97532 0.89013 0.91890 0.88929 0.90145 0.90621 0.87350 0.83862 0.84496 0.83218 0.82587 0.77923 0.91165 0.92807 0.96392 0.95417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.36 10.68 21.65 0.23 -56.12 16 2 C -0.06 -3.52 5.40 84.86 0.46 -3.07 16 3 Si 0.97 45.83 29.56 68.60 2.03 47.86 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.24 -13.75 10.24 84.03 0.86 -12.89 16 8 H 0.07 4.09 7.85 -2.91 -0.02 4.07 16 9 N -0.62 -31.99 3.41 -693.03 -2.36 -34.35 16 10 C 0.18 8.76 5.37 86.92 0.47 9.23 16 11 C -0.12 -4.20 5.93 31.56 0.19 -4.01 16 12 C -0.07 -2.29 0.61 -51.86 -0.03 -2.32 16 13 C -0.11 -2.79 5.87 31.66 0.19 -2.60 16 14 C 0.10 2.17 6.46 87.02 0.56 2.73 16 15 N -0.62 -16.60 3.34 -822.99 -2.75 -19.35 16 16 C 0.56 16.06 7.61 85.05 0.65 16.71 16 17 O -0.60 -22.10 16.44 -4.60 -0.08 -22.18 16 18 C -0.26 -5.21 8.90 22.47 0.20 -5.01 16 19 C 0.04 0.84 9.40 22.51 0.21 1.06 16 20 C -0.02 -0.40 6.74 39.08 0.26 -0.13 16 21 C -0.15 -2.28 10.86 22.66 0.25 -2.03 16 22 C -0.23 -2.70 10.81 22.01 0.24 -2.47 16 23 C 0.03 0.28 11.90 83.45 0.99 1.28 16 24 N -0.54 -5.81 5.94 -187.33 -1.11 -6.92 16 25 H 0.43 2.58 7.87 -92.71 -0.73 1.85 16 26 C 0.13 4.07 6.13 86.15 0.53 4.60 16 27 C 0.15 6.13 6.39 86.15 0.55 6.68 16 28 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 29 H 0.03 1.62 6.95 -2.39 -0.02 1.60 16 30 H 0.01 0.34 8.06 -2.39 -0.02 0.32 16 31 H 0.09 2.76 7.78 -2.39 -0.02 2.74 16 32 H 0.06 2.25 8.09 -2.38 -0.02 2.23 16 33 H 0.09 2.08 7.82 -2.39 -0.02 2.06 16 34 H 0.08 2.27 7.94 -2.39 -0.02 2.25 16 35 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.11 1.48 7.12 -2.39 -0.02 1.46 16 37 H 0.14 1.92 5.61 -2.91 -0.02 1.91 16 38 H 0.14 2.95 7.46 -2.91 -0.02 2.93 16 39 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 40 H 0.16 1.25 8.06 -2.92 -0.02 1.22 16 41 H 0.20 0.24 8.06 -2.91 -0.02 0.22 16 42 H 0.07 2.17 7.86 -2.39 -0.02 2.15 16 43 H 0.05 1.83 7.42 -2.39 -0.02 1.82 16 44 H 0.02 0.76 7.44 -2.39 -0.02 0.75 16 45 H 0.03 1.11 7.78 -2.38 -0.02 1.10 16 Total: -1.00 -75.43 362.97 2.79 -72.63 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.27 Total: 10.68 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: 6.57 Total: 7.75 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -5.99 Total: -116.75 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.08 Total: -22.18 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -75.43 2.79 -72.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041238557.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.216 kcal (2) G-P(sol) polarization free energy of solvation -75.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds