Wall clock time and date at job start Tue Mar 31 2020 10:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99848 * 2 1 4 4 H 1.48501 * 109.46825 * 269.99913 * 3 2 1 5 5 H 1.48495 * 109.47355 * 30.00418 * 3 2 1 6 6 H 1.48504 * 109.46755 * 150.00173 * 3 2 1 7 7 C 1.38809 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99881 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00454 * 0.02562 * 7 2 1 10 10 C 1.47267 * 125.91711 * 0.52828 * 9 7 2 11 11 C 1.55296 * 106.87439 * 185.55661 * 10 9 7 12 12 C 1.53696 * 101.81580 * 21.83677 * 11 10 9 13 13 H 1.09002 * 111.10559 * 78.59921 * 12 11 10 14 14 C 1.51981 * 115.00263 * 206.53411 * 12 11 10 15 15 C 1.53468 * 107.37391 * 175.29257 * 14 12 11 16 16 N 1.46597 * 110.94524 * 308.46378 * 15 14 12 17 17 C 1.34776 * 119.75611 * 227.65855 * 16 15 14 18 18 O 1.21275 * 120.00382 * 179.73205 * 17 16 15 19 19 C 1.50700 * 119.99638 * 359.72297 * 17 16 15 20 20 C 1.50701 * 109.47421 * 180.02562 * 19 17 16 21 21 C 1.38677 * 120.41554 * 270.21945 * 20 19 17 22 22 C 1.38625 * 118.42126 * 180.26631 * 21 20 19 23 23 C 1.38223 * 119.15978 * 359.46985 * 22 21 20 24 24 N 1.31856 * 120.76567 * 0.30777 * 23 22 21 25 25 C 1.31884 * 121.72562 * 359.97275 * 24 23 22 26 26 C 1.47795 * 120.49444 * 47.37904 * 16 15 14 27 27 C 1.45502 * 126.39814 * 180.02562 * 9 7 2 28 28 H 1.09005 * 109.56671 * 265.84520 * 27 9 7 29 29 H 0.96995 * 119.99817 * 359.97438 * 1 2 3 30 30 H 1.09006 * 110.50464 * 65.97713 * 10 9 7 31 31 H 1.09004 * 109.65851 * 304.66979 * 10 9 7 32 32 H 1.09000 * 110.96130 * 263.70022 * 11 10 9 33 33 H 1.09002 * 110.98665 * 139.98203 * 11 10 9 34 34 H 1.08999 * 109.89350 * 294.88730 * 14 12 11 35 35 H 1.09004 * 109.88876 * 55.91885 * 14 12 11 36 36 H 1.08995 * 109.18375 * 188.02970 * 15 14 12 37 37 H 1.09000 * 109.04304 * 68.80053 * 15 14 12 38 38 H 1.08995 * 109.47282 * 60.00258 * 19 17 16 39 39 H 1.09008 * 109.47529 * 300.00299 * 19 17 16 40 40 H 1.08003 * 120.78603 * 0.02562 * 21 20 19 41 41 H 1.08002 * 120.42343 * 179.75479 * 22 21 20 42 42 H 1.08005 * 119.61951 * 180.28273 * 23 22 21 43 43 H 1.07998 * 119.61861 * 180.02562 * 25 24 23 44 44 H 1.08998 * 110.06305 * 68.23670 * 26 16 15 45 45 H 1.09001 * 110.06941 * 189.69196 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1392 -2.5400 -0.0110 11 6 -0.4363 -4.0570 0.1378 12 6 0.8636 -4.5711 0.7765 13 1 0.8897 -4.3524 1.8441 14 6 1.1831 -6.0305 0.4973 15 6 2.5597 -6.3234 1.1092 16 7 3.5507 -5.3383 0.6659 17 6 4.7505 -5.7533 0.2135 18 8 5.5718 -4.9424 -0.1589 19 6 5.0716 -7.2250 0.1707 20 6 6.4646 -7.4198 -0.3702 21 6 6.6740 -7.5698 -1.7329 22 6 7.9717 -7.7521 -2.1849 23 6 9.0077 -7.7671 -1.2700 24 7 8.7718 -7.6167 0.0186 25 6 7.5499 -7.4467 0.4847 26 6 3.2415 -3.8935 0.7054 27 6 1.9081 -3.7214 0.0016 28 1 1.9869 -4.0862 -1.0226 29 1 -0.4849 0.8400 0.0004 30 1 -0.5541 -2.1705 -0.9489 31 1 -0.5712 -1.9929 0.8270 32 1 -0.6020 -4.5192 -0.8354 33 1 -1.2879 -4.2252 0.7971 34 1 0.4284 -6.6697 0.9555 35 1 1.2127 -6.2044 -0.5784 36 1 2.8824 -7.3191 0.8049 37 1 2.4806 -6.2889 2.1958 38 1 4.3563 -7.7344 -0.4749 39 1 5.0118 -7.6395 1.1772 40 1 5.8452 -7.5490 -2.4251 41 1 8.1713 -7.8762 -3.2390 42 1 10.0221 -7.9040 -1.6144 43 1 7.3957 -7.3264 1.5468 44 1 3.1648 -3.5557 1.7389 45 1 4.0166 -3.3308 0.1851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042020513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:26 Heat of formation + Delta-G solvation = 32.902514 kcal Electronic energy + Delta-G solvation = -26468.311070 eV Core-core repulsion = 22872.422340 eV Total energy + Delta-G solvation = -3595.888730 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.65498 -39.85410 -38.24648 -35.45118 -33.74294 -32.92141 -32.07165 -31.28724 -29.84070 -28.64010 -27.62975 -24.71879 -23.89518 -23.70675 -22.41130 -22.22421 -20.14857 -19.75147 -18.88438 -17.24042 -17.15473 -16.64037 -16.52220 -15.81112 -15.16405 -15.10676 -14.68931 -14.37918 -14.14226 -13.91019 -13.62766 -13.50091 -13.26416 -13.19053 -12.93205 -12.83358 -12.29402 -12.26010 -11.94873 -11.68378 -11.50945 -11.32785 -10.95107 -10.82180 -10.76060 -10.14817 -10.00703 -9.99767 -9.88612 -9.73842 -9.66885 -9.58612 -9.48889 -9.06829 -8.62381 -8.45299 -6.87112 -5.72356 -3.06985 0.95199 1.16239 2.71728 3.08205 3.41493 3.47141 3.48921 3.70527 4.24988 4.48986 4.50764 4.61079 4.61789 4.80020 4.82227 4.88244 4.96714 5.11089 5.15346 5.21236 5.36363 5.43521 5.50543 5.59799 5.61205 5.67027 5.75128 5.89097 5.95081 5.99479 6.04824 6.08321 6.10774 6.14646 6.36625 6.45832 6.53787 6.55223 6.69635 6.73325 7.03156 7.52807 7.55456 7.61761 7.81655 7.83559 8.23763 8.29980 9.19763 9.81837 10.46922 11.39001 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.003433 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.684785 B = 8153.737628 C = 9412.935275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.592 5.592 10 C 0.178 3.822 11 C -0.139 4.139 12 C -0.113 4.113 13 H 0.078 0.922 14 C -0.120 4.120 15 C 0.107 3.893 16 N -0.606 5.606 17 C 0.511 3.489 18 O -0.534 6.534 19 C -0.098 4.098 20 C -0.114 4.114 21 C -0.061 4.061 22 C -0.172 4.172 23 C 0.093 3.907 24 N -0.485 5.485 25 C 0.113 3.887 26 C 0.117 3.883 27 C 0.157 3.843 28 H 0.023 0.977 29 H 0.252 0.748 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.070 0.930 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.664 -20.411 0.246 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.317 5.317 10 C 0.053 3.947 11 C -0.177 4.177 12 C -0.133 4.133 13 H 0.096 0.904 14 C -0.159 4.159 15 C -0.016 4.016 16 N -0.340 5.340 17 C 0.298 3.702 18 O -0.411 6.411 19 C -0.139 4.139 20 C -0.116 4.116 21 C -0.087 4.087 22 C -0.192 4.192 23 C -0.064 4.064 24 N -0.194 5.194 25 C -0.044 4.044 26 C -0.005 4.005 27 C 0.048 3.952 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.150 0.850 41 H 0.152 0.848 42 H 0.171 0.829 43 H 0.169 0.831 44 H 0.089 0.911 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.755 -19.717 0.648 21.197 hybrid contribution -0.485 0.987 -0.697 1.302 sum 7.269 -18.730 -0.048 20.091 Atomic orbital electron populations 1.69954 1.04885 1.25062 1.56996 1.24785 0.95689 0.97679 1.02056 0.86140 0.78696 0.83464 0.77654 1.21573 1.21665 1.20559 1.19057 0.90483 0.82336 1.43934 0.90329 1.43982 1.01762 0.99277 1.86659 1.21402 0.83728 0.88552 1.00985 1.22742 0.96009 0.99776 0.99166 1.22268 0.97457 0.93304 1.00250 0.90400 1.21731 0.95353 0.97546 1.01252 1.21663 0.89297 0.91339 0.99276 1.48299 1.14004 1.07971 1.63746 1.20415 0.81885 0.90401 0.77527 1.90736 1.47294 1.55663 1.47373 1.20666 0.94451 0.94941 1.03814 1.20340 0.95708 1.00974 0.94586 1.21454 0.97554 0.94847 0.94876 1.22103 0.93577 1.02164 1.01312 1.22739 0.99489 0.95527 0.88608 1.67675 1.23486 1.11792 1.16409 1.22580 0.87222 0.94530 1.00109 1.21699 0.99016 0.78278 1.01481 1.20974 0.91111 0.87608 0.95519 0.95941 0.93756 0.94695 0.92424 0.92663 0.92260 0.90788 0.91464 0.90332 0.91576 0.87753 0.87685 0.84976 0.84803 0.82908 0.83064 0.91144 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.91 10.36 55.49 0.57 -26.33 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.23 -6.37 9.87 -15.06 -0.15 -6.52 16 8 H 0.08 2.15 7.44 -52.49 -0.39 1.76 16 9 N -0.59 -14.80 3.31 -163.65 -0.54 -15.34 16 10 C 0.18 4.22 5.42 -2.41 -0.01 4.21 16 11 C -0.14 -2.46 6.54 -25.15 -0.16 -2.62 16 12 C -0.11 -1.84 2.61 -89.53 -0.23 -2.07 16 13 H 0.08 1.32 8.13 -51.93 -0.42 0.89 16 14 C -0.12 -1.41 5.71 -27.01 -0.15 -1.56 16 15 C 0.11 1.12 6.19 -3.75 -0.02 1.10 16 16 N -0.61 -8.74 3.02 -173.02 -0.52 -9.27 16 17 C 0.51 7.44 7.67 -10.99 -0.08 7.36 16 18 O -0.53 -10.29 15.40 5.56 0.09 -10.21 16 19 C -0.10 -0.94 4.19 -29.03 -0.12 -1.06 16 20 C -0.11 -1.28 4.39 -104.48 -0.46 -1.73 16 21 C -0.06 -0.65 9.86 -39.28 -0.39 -1.04 16 22 C -0.17 -1.66 10.11 -39.44 -0.40 -2.06 16 23 C 0.09 0.98 11.18 -17.55 -0.20 0.79 16 24 N -0.49 -6.18 10.36 -13.25 -0.14 -6.32 16 25 C 0.11 1.34 10.86 -17.55 -0.19 1.15 16 26 C 0.12 2.19 5.68 -3.96 -0.02 2.17 16 27 C 0.16 3.16 2.78 -67.85 -0.19 2.97 16 28 H 0.02 0.50 7.94 -51.93 -0.41 0.08 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.03 0.92 7.79 -51.93 -0.40 0.51 16 31 H 0.06 1.52 7.10 -51.93 -0.37 1.15 16 32 H 0.05 0.92 8.12 -51.93 -0.42 0.50 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.81 7.99 -51.93 -0.41 0.40 16 36 H 0.08 0.56 5.85 -51.93 -0.30 0.26 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.76 7.49 -51.93 -0.39 0.37 16 39 H 0.10 0.73 7.96 -51.92 -0.41 0.32 16 40 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 41 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.15 1.17 8.06 -52.48 -0.42 0.74 16 43 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 45 H 0.09 1.96 6.79 -51.93 -0.35 1.61 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -34.19 357.60 -9.87 -44.06 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -6.81 Total: -0.16 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -2.88 Total: 0.81 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: -0.63 Total: -57.26 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.19 -9.87 -44.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042020513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.960 kcal (2) G-P(sol) polarization free energy of solvation -34.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds