Wall clock time and date at job start Tue Mar 31 2020 10:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99848 * 2 1 4 4 H 1.48501 * 109.46825 * 269.99913 * 3 2 1 5 5 H 1.48495 * 109.47355 * 30.00418 * 3 2 1 6 6 H 1.48504 * 109.46755 * 150.00173 * 3 2 1 7 7 C 1.38809 * 119.99694 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99881 * 179.97438 * 7 2 1 9 9 N 1.36941 * 120.00454 * 0.02562 * 7 2 1 10 10 C 1.47267 * 125.91711 * 0.52828 * 9 7 2 11 11 C 1.55296 * 106.87439 * 185.55661 * 10 9 7 12 12 C 1.53696 * 101.81580 * 21.83677 * 11 10 9 13 13 H 1.09002 * 111.10559 * 78.59921 * 12 11 10 14 14 C 1.51981 * 115.00263 * 206.53411 * 12 11 10 15 15 C 1.53468 * 107.37391 * 175.29257 * 14 12 11 16 16 N 1.46597 * 110.94524 * 308.46378 * 15 14 12 17 17 C 1.34776 * 119.75611 * 227.65855 * 16 15 14 18 18 O 1.21275 * 120.00382 * 179.73205 * 17 16 15 19 19 C 1.50700 * 119.99638 * 359.72297 * 17 16 15 20 20 C 1.50701 * 109.47421 * 180.02562 * 19 17 16 21 21 C 1.38677 * 120.41554 * 270.21945 * 20 19 17 22 22 C 1.38625 * 118.42126 * 180.26631 * 21 20 19 23 23 C 1.38223 * 119.15978 * 359.46985 * 22 21 20 24 24 N 1.31856 * 120.76567 * 0.30777 * 23 22 21 25 25 C 1.31884 * 121.72562 * 359.97275 * 24 23 22 26 26 C 1.47795 * 120.49444 * 47.37904 * 16 15 14 27 27 C 1.45502 * 126.39814 * 180.02562 * 9 7 2 28 28 H 1.09005 * 109.56671 * 265.84520 * 27 9 7 29 29 H 0.96995 * 119.99817 * 359.97438 * 1 2 3 30 30 H 1.09006 * 110.50464 * 65.97713 * 10 9 7 31 31 H 1.09004 * 109.65851 * 304.66979 * 10 9 7 32 32 H 1.09000 * 110.96130 * 263.70022 * 11 10 9 33 33 H 1.09002 * 110.98665 * 139.98203 * 11 10 9 34 34 H 1.08999 * 109.89350 * 294.88730 * 14 12 11 35 35 H 1.09004 * 109.88876 * 55.91885 * 14 12 11 36 36 H 1.08995 * 109.18375 * 188.02970 * 15 14 12 37 37 H 1.09000 * 109.04304 * 68.80053 * 15 14 12 38 38 H 1.08995 * 109.47282 * 60.00258 * 19 17 16 39 39 H 1.09008 * 109.47529 * 300.00299 * 19 17 16 40 40 H 1.08003 * 120.78603 * 0.02562 * 21 20 19 41 41 H 1.08002 * 120.42343 * 179.75479 * 22 21 20 42 42 H 1.08005 * 119.61951 * 180.28273 * 23 22 21 43 43 H 1.07998 * 119.61861 * 180.02562 * 25 24 23 44 44 H 1.08998 * 110.06305 * 68.23670 * 26 16 15 45 45 H 1.09001 * 110.06941 * 189.69196 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1392 -2.5400 -0.0110 11 6 -0.4363 -4.0570 0.1378 12 6 0.8636 -4.5711 0.7765 13 1 0.8897 -4.3524 1.8441 14 6 1.1831 -6.0305 0.4973 15 6 2.5597 -6.3234 1.1092 16 7 3.5507 -5.3383 0.6659 17 6 4.7505 -5.7533 0.2135 18 8 5.5718 -4.9424 -0.1589 19 6 5.0716 -7.2250 0.1707 20 6 6.4646 -7.4198 -0.3702 21 6 6.6740 -7.5698 -1.7329 22 6 7.9717 -7.7521 -2.1849 23 6 9.0077 -7.7671 -1.2700 24 7 8.7718 -7.6167 0.0186 25 6 7.5499 -7.4467 0.4847 26 6 3.2415 -3.8935 0.7054 27 6 1.9081 -3.7214 0.0016 28 1 1.9869 -4.0862 -1.0226 29 1 -0.4849 0.8400 0.0004 30 1 -0.5541 -2.1705 -0.9489 31 1 -0.5712 -1.9929 0.8270 32 1 -0.6020 -4.5192 -0.8354 33 1 -1.2879 -4.2252 0.7971 34 1 0.4284 -6.6697 0.9555 35 1 1.2127 -6.2044 -0.5784 36 1 2.8824 -7.3191 0.8049 37 1 2.4806 -6.2889 2.1958 38 1 4.3563 -7.7344 -0.4749 39 1 5.0118 -7.6395 1.1772 40 1 5.8452 -7.5490 -2.4251 41 1 8.1713 -7.8762 -3.2390 42 1 10.0221 -7.9040 -1.6144 43 1 7.3957 -7.3264 1.5468 44 1 3.1648 -3.5557 1.7389 45 1 4.0166 -3.3308 0.1851 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042020513.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:25 Heat of formation + Delta-G solvation = 10.602792 kcal Electronic energy + Delta-G solvation = -26469.278059 eV Core-core repulsion = 22872.422340 eV Total energy + Delta-G solvation = -3596.855719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.68037 -40.88612 -39.61524 -36.87033 -34.70665 -34.55192 -32.92676 -32.78467 -31.21747 -30.22762 -28.64585 -26.54267 -25.27962 -24.49371 -23.52809 -23.24979 -21.80192 -21.24872 -19.99986 -18.71666 -18.05148 -17.97676 -17.42864 -16.91592 -16.85698 -16.31347 -15.89959 -15.75293 -15.59492 -15.20137 -14.90318 -14.53383 -14.38487 -14.12037 -13.99581 -13.92792 -13.79712 -13.51875 -13.21179 -13.13539 -12.93892 -12.74617 -12.52112 -12.42897 -12.08941 -11.98160 -11.79846 -11.53755 -11.32848 -11.01139 -10.98807 -10.74205 -10.64728 -10.39708 -9.88121 -9.65674 -8.92788 -7.88517 -5.24057 0.16723 0.37978 1.41198 1.42190 1.51248 1.63844 1.97651 2.46804 2.89301 3.28855 3.46889 3.53619 3.68671 3.76093 3.90744 3.93396 3.99183 4.03243 4.10751 4.13663 4.30321 4.32811 4.36167 4.49342 4.55794 4.59661 4.64336 4.76511 4.78643 4.85507 4.89036 4.95706 4.96803 5.14464 5.18299 5.20173 5.26779 5.32842 5.39162 5.52055 5.63405 5.66600 5.78883 5.80721 6.18726 6.46902 7.04401 7.07434 7.19696 7.76147 8.40670 9.21229 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016119 B = 0.003433 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.684785 B = 8153.737628 C = 9412.935275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.061 4.061 3 Si 0.970 3.030 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.239 4.239 8 H 0.072 0.928 9 N -0.614 5.614 10 C 0.180 3.820 11 C -0.123 4.123 12 C -0.096 4.096 13 H 0.074 0.926 14 C -0.112 4.112 15 C 0.100 3.900 16 N -0.604 5.604 17 C 0.506 3.494 18 O -0.592 6.592 19 C -0.085 4.085 20 C -0.125 4.125 21 C -0.075 4.075 22 C -0.173 4.173 23 C 0.079 3.921 24 N -0.516 5.516 25 C 0.093 3.907 26 C 0.130 3.870 27 C 0.148 3.852 28 H 0.009 0.991 29 H 0.247 0.753 30 H -0.005 1.005 31 H 0.023 0.977 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.149 0.851 41 H 0.161 0.839 42 H 0.176 0.824 43 H 0.161 0.839 44 H 0.061 0.939 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.531 -23.971 0.572 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.254 4.254 3 Si 0.799 3.201 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.339 5.339 10 C 0.055 3.945 11 C -0.161 4.161 12 C -0.116 4.116 13 H 0.092 0.908 14 C -0.150 4.150 15 C -0.021 4.021 16 N -0.337 5.337 17 C 0.295 3.705 18 O -0.473 6.473 19 C -0.124 4.124 20 C -0.127 4.127 21 C -0.101 4.101 22 C -0.192 4.192 23 C -0.077 4.077 24 N -0.225 5.225 25 C -0.064 4.064 26 C 0.006 3.994 27 C 0.040 3.960 28 H 0.027 0.973 29 H 0.057 0.943 30 H 0.014 0.986 31 H 0.041 0.959 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.102 0.898 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.179 0.821 42 H 0.193 0.807 43 H 0.179 0.821 44 H 0.079 0.921 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.614 -23.347 0.989 24.577 hybrid contribution -0.393 2.100 -0.856 2.301 sum 7.221 -21.247 0.132 22.441 Atomic orbital electron populations 1.70161 1.06012 1.25222 1.58219 1.25545 0.96575 1.00668 1.02636 0.85199 0.77720 0.79733 0.77458 1.21496 1.21465 1.19866 1.19300 0.90559 0.83978 1.42968 0.90994 1.44271 1.02674 1.00496 1.86446 1.21213 0.82977 0.92793 0.97488 1.22611 0.97805 0.94792 1.00874 1.22211 0.94357 0.95971 0.99042 0.90803 1.21751 0.97165 0.94066 1.02009 1.22076 0.87545 0.92108 1.00365 1.48371 1.15246 1.06450 1.63657 1.21373 0.80892 0.92304 0.75883 1.90717 1.49049 1.57705 1.49806 1.20731 0.94197 0.90826 1.06665 1.20542 0.96349 1.00964 0.94894 1.21830 0.98533 0.94561 0.95170 1.22445 0.93165 1.01038 1.02599 1.23214 1.01019 0.95206 0.88267 1.67662 1.24238 1.12906 1.17689 1.22867 0.87482 0.95045 1.00986 1.21197 0.96854 0.81455 0.99909 1.21148 0.93302 0.86000 0.95560 0.97341 0.94331 0.98632 0.95897 0.91150 0.89697 0.86753 0.91302 0.85513 0.89811 0.84278 0.84135 0.83349 0.82146 0.80718 0.82144 0.92080 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.83 10.36 21.65 0.22 -57.60 16 2 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 3 Si 0.97 47.65 29.55 68.60 2.03 49.67 16 4 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 5 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.24 -13.86 9.87 84.03 0.83 -13.03 16 8 H 0.07 4.15 7.44 -2.91 -0.02 4.13 16 9 N -0.61 -31.94 3.31 -671.66 -2.22 -34.17 16 10 C 0.18 8.88 5.42 87.02 0.47 9.35 16 11 C -0.12 -4.16 6.54 31.62 0.21 -3.95 16 12 C -0.10 -2.91 2.61 -10.09 -0.03 -2.93 16 13 H 0.07 2.33 8.13 -2.39 -0.02 2.31 16 14 C -0.11 -2.04 5.71 30.42 0.17 -1.87 16 15 C 0.10 1.56 6.19 86.52 0.54 2.10 16 16 N -0.60 -16.12 3.02 -819.70 -2.47 -18.60 16 17 C 0.51 13.80 7.67 87.66 0.67 14.47 16 18 O -0.59 -23.12 15.40 -3.02 -0.05 -23.17 16 19 C -0.08 -1.28 4.19 29.10 0.12 -1.15 16 20 C -0.13 -2.53 4.39 -19.77 -0.09 -2.61 16 21 C -0.08 -1.42 9.86 22.47 0.22 -1.20 16 22 C -0.17 -3.03 10.11 22.36 0.23 -2.80 16 23 C 0.08 1.58 11.18 84.69 0.95 2.53 16 24 N -0.52 -12.82 10.36 -195.84 -2.03 -14.84 16 25 C 0.09 2.10 10.86 84.67 0.92 3.02 16 26 C 0.13 4.94 5.68 85.72 0.49 5.42 16 27 C 0.15 5.99 2.78 45.58 0.13 6.12 16 28 H 0.01 0.39 7.94 -2.38 -0.02 0.38 16 29 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.00 -0.25 7.79 -2.38 -0.02 -0.27 16 31 H 0.02 1.26 7.10 -2.38 -0.02 1.24 16 32 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 33 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.07 1.31 7.99 -2.38 -0.02 1.29 16 36 H 0.13 0.87 5.85 -2.39 -0.01 0.85 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.14 1.18 7.49 -2.39 -0.02 1.16 16 39 H 0.14 1.17 7.96 -2.38 -0.02 1.15 16 40 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 41 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.18 2.43 8.06 -2.91 -0.02 2.41 16 43 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 44 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 45 H 0.05 2.33 6.79 -2.39 -0.02 2.32 16 Total: -1.00 -82.69 357.60 2.75 -79.94 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: 0.98 Total: 8.41 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.29 Total: 10.35 kcal Atomic # 7 Polarization: -118.71 SS G_CDS: -6.50 Total: -125.21 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 2.03 Total: 49.67 kcal Total: -82.69 2.75 -79.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042020513.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.542 kcal (2) G-P(sol) polarization free energy of solvation -82.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds