Wall clock time and date at job start Tue Mar 31 2020 11:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99891 * 2 1 4 4 H 1.48494 * 109.46738 * 274.98469 * 3 2 1 5 5 H 1.48506 * 109.47192 * 34.98222 * 3 2 1 6 6 H 1.48495 * 109.47137 * 154.98266 * 3 2 1 7 7 C 1.38813 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99901 * 187.03201 * 7 2 1 9 9 N 1.36934 * 119.99778 * 7.03073 * 7 2 1 10 10 C 1.48150 * 126.40220 * 6.77111 * 9 7 2 11 11 C 1.55300 * 107.04696 * 175.03100 * 10 9 7 12 12 C 1.53698 * 101.81117 * 337.55604 * 11 10 9 13 13 H 1.09000 * 111.11327 * 281.39530 * 12 11 10 14 14 C 1.51913 * 115.01624 * 153.45732 * 12 11 10 15 15 C 1.53888 * 107.33505 * 184.56342 * 14 12 11 16 16 N 1.46597 * 110.68502 * 51.81366 * 15 14 12 17 17 C 1.34777 * 119.75824 * 132.27484 * 16 15 14 18 18 O 1.21781 * 119.99962 * 175.11164 * 17 16 15 19 19 C 1.41516 * 119.99837 * 355.11194 * 17 16 15 20 20 C 1.35619 * 119.99712 * 217.72111 * 19 17 16 21 21 C 1.41672 * 120.00325 * 6.91171 * 20 19 17 22 22 C 1.38277 * 126.25745 * 212.95835 * 21 20 19 23 23 C 1.39798 * 107.07697 * 179.97438 * 22 21 20 24 24 C 1.35509 * 107.90548 * 0.02562 * 23 22 21 25 25 N 1.35750 * 108.90912 * 359.76502 * 24 23 22 26 26 H 0.97009 * 125.68623 * 180.23594 * 25 24 23 27 27 C 1.47797 * 120.48554 * 312.25984 * 16 15 14 28 28 C 1.45509 * 126.39667 * 186.80888 * 9 7 2 29 29 H 1.09003 * 109.56520 * 94.11893 * 28 9 7 30 30 H 0.96997 * 120.00001 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.92186 * 294.38031 * 10 9 7 32 32 H 1.09000 * 109.92244 * 55.48146 * 10 9 7 33 33 H 1.08996 * 110.95922 * 95.68440 * 11 10 9 34 34 H 1.08998 * 110.95789 * 219.38859 * 11 10 9 35 35 H 1.08998 * 109.85533 * 65.11738 * 14 12 11 36 36 H 1.08999 * 109.89282 * 304.03315 * 14 12 11 37 37 H 1.09003 * 109.23148 * 291.51696 * 15 14 12 38 38 H 1.09004 * 109.23237 * 172.11103 * 15 14 12 39 39 H 1.07992 * 120.00247 * 37.71122 * 19 17 16 40 40 H 1.08000 * 119.99813 * 186.91566 * 20 19 17 41 41 H 1.07998 * 126.46508 * 359.94403 * 22 21 20 42 42 H 1.07990 * 126.04445 * 179.97438 * 23 22 21 43 43 H 1.07997 * 125.53868 * 180.02562 * 24 23 22 44 44 H 1.09007 * 110.06340 * 170.49032 * 27 16 15 45 45 H 1.08997 * 110.06530 * 292.05073 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6201 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0843 -1.2056 0.1150 9 7 1.3334 -2.3836 -0.1441 10 6 -0.1080 -2.5394 -0.4492 11 6 -0.3718 -4.0581 -0.6383 12 6 1.0306 -4.5796 -0.9898 13 1 1.2764 -4.3737 -2.0316 14 6 1.2827 -6.0348 -0.6340 15 6 2.7583 -6.3354 -0.9507 16 7 3.6356 -5.3451 -0.3191 17 6 4.7156 -5.7546 0.3754 18 8 5.4960 -4.9356 0.8263 19 6 4.9427 -7.1363 0.5808 20 6 5.4441 -7.5726 1.7629 21 6 5.6033 -6.6685 2.8419 22 6 6.5953 -6.7103 3.8044 23 6 6.3732 -5.6351 4.6698 24 6 5.2760 -4.9695 4.2343 25 7 4.8014 -5.5846 3.1212 26 1 4.0254 -5.3078 2.6090 27 6 3.3446 -3.9010 -0.4387 28 6 1.8952 -3.7207 -0.0260 29 1 1.7572 -4.0861 0.9916 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7062 -2.1588 0.3788 32 1 -0.3544 -2.0000 -1.3638 33 1 -0.7352 -4.5087 0.2853 34 1 -1.0701 -4.2336 -1.4566 35 1 0.6368 -6.6791 -1.2305 36 1 1.0909 -6.1959 0.4268 37 1 2.9063 -6.3092 -2.0303 38 1 3.0106 -7.3281 -0.5779 39 1 4.7165 -7.8431 -0.2037 40 1 5.7222 -8.6094 1.8817 41 1 7.3912 -7.4368 3.8746 42 1 6.9699 -5.3805 5.5331 43 1 4.8512 -4.0901 4.6953 44 1 3.9959 -3.3321 0.2250 45 1 3.4832 -3.5757 -1.4697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042029277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:24 Heat of formation + Delta-G solvation = 73.859894 kcal Electronic energy + Delta-G solvation = -27218.741516 eV Core-core repulsion = 23624.628831 eV Total energy + Delta-G solvation = -3594.112685 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.22967 -40.04672 -38.34165 -35.41039 -33.88708 -32.94239 -31.30122 -30.82455 -29.82078 -28.64444 -27.89367 -24.86103 -24.49114 -22.64739 -22.29380 -20.51465 -20.27890 -20.14117 -19.69986 -18.91201 -17.64725 -16.57624 -16.50784 -15.33690 -15.29050 -14.88651 -14.42267 -14.39081 -13.93494 -13.90675 -13.69507 -13.57537 -13.12285 -13.06423 -12.75512 -12.56247 -12.29965 -12.15828 -11.97536 -11.92550 -11.59220 -11.34952 -10.95906 -10.87247 -10.80845 -10.19354 -10.09694 -10.06012 -9.94198 -9.72455 -9.63415 -9.48393 -8.78407 -8.67450 -8.42462 -7.58072 -6.89653 -5.77269 -3.11758 0.85380 2.56730 3.01968 3.18273 3.30829 3.38561 3.44976 3.46593 3.56712 4.46987 4.70577 4.81268 4.93159 4.94266 5.09045 5.27457 5.33449 5.37615 5.46501 5.49087 5.56743 5.57439 5.63337 5.71226 5.80215 5.93311 5.95248 5.98769 6.04715 6.07482 6.10841 6.30715 6.34027 6.36708 6.43223 6.49579 6.65821 6.70680 6.97325 7.03950 7.20345 7.43576 7.55095 7.58774 7.65820 7.75154 8.17720 8.31121 9.13267 9.76994 10.43615 11.35114 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.004548 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.295773 B = 6154.684647 C = 7516.307486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.003 4.003 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.590 5.590 10 C 0.175 3.825 11 C -0.137 4.137 12 C -0.114 4.114 13 H 0.077 0.923 14 C -0.119 4.119 15 C 0.108 3.892 16 N -0.607 5.607 17 C 0.534 3.466 18 O -0.534 6.534 19 C -0.237 4.237 20 C 0.009 3.991 21 C 0.012 3.988 22 C -0.159 4.159 23 C -0.213 4.213 24 C 0.018 3.982 25 N -0.521 5.521 26 H 0.414 0.586 27 C 0.115 3.885 28 C 0.158 3.842 29 H 0.018 0.982 30 H 0.253 0.747 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.137 0.863 40 H 0.143 0.857 41 H 0.136 0.864 42 H 0.134 0.866 43 H 0.163 0.837 44 H 0.090 0.910 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 -18.207 1.839 19.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.200 4.200 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.360 4.360 8 H 0.096 0.904 9 N -0.315 5.315 10 C 0.051 3.949 11 C -0.175 4.175 12 C -0.134 4.134 13 H 0.095 0.905 14 C -0.157 4.157 15 C -0.015 4.015 16 N -0.340 5.340 17 C 0.325 3.675 18 O -0.412 6.412 19 C -0.259 4.259 20 C -0.012 4.012 21 C -0.099 4.099 22 C -0.184 4.184 23 C -0.237 4.237 24 C -0.119 4.119 25 N -0.114 5.114 26 H 0.253 0.747 27 C -0.007 4.007 28 C 0.049 3.951 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.154 0.846 42 H 0.152 0.848 43 H 0.180 0.820 44 H 0.108 0.892 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.522 -17.447 1.987 18.407 hybrid contribution -0.031 1.089 -0.474 1.188 sum 5.491 -16.358 1.513 17.322 Atomic orbital electron populations 1.69951 1.04944 1.25168 1.56439 1.24786 0.95615 0.97707 1.01919 0.86149 0.78835 0.83590 0.77563 1.21575 1.21695 1.20482 1.19025 0.90823 0.82482 1.43659 0.90371 1.44146 1.05347 0.99141 1.82868 1.21534 0.84715 0.88606 1.00044 1.22709 0.95326 0.99493 0.99997 1.22266 0.97524 0.93459 1.00121 0.90468 1.21782 0.94718 0.97373 1.01860 1.21754 0.90544 0.91567 0.97654 1.48400 1.25481 1.07790 1.52371 1.17366 0.81559 0.89696 0.78902 1.90934 1.44649 1.55395 1.50256 1.22099 1.08144 0.95841 0.99825 1.20671 0.91942 0.98172 0.90391 1.18113 0.98156 0.93324 1.00334 1.21248 0.99707 1.01412 0.96022 1.20723 1.00143 0.99543 1.03291 1.21995 0.98644 1.00221 0.91023 1.42228 1.24747 1.21820 1.22588 0.74745 1.21697 0.98152 0.78617 1.02269 1.20937 0.91054 0.87717 0.95413 0.96429 0.93721 0.92952 0.94289 0.92463 0.92231 0.90826 0.91526 0.91741 0.90057 0.84539 0.83925 0.84581 0.84767 0.81965 0.89162 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.64 10.61 55.49 0.59 -26.05 16 2 C 0.00 -0.10 5.46 -17.43 -0.10 -0.19 16 3 Si 0.91 22.20 29.56 -169.99 -5.02 17.17 16 4 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.34 9.89 -15.06 -0.15 -6.48 16 8 H 0.08 2.11 7.37 -52.49 -0.39 1.72 16 9 N -0.59 -14.52 3.35 -162.91 -0.55 -15.06 16 10 C 0.18 4.10 5.45 -1.91 -0.01 4.09 16 11 C -0.14 -2.40 6.54 -25.15 -0.16 -2.57 16 12 C -0.11 -1.84 2.61 -89.55 -0.23 -2.08 16 13 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 14 C -0.12 -1.43 5.71 -26.82 -0.15 -1.58 16 15 C 0.11 1.21 6.20 -3.53 -0.02 1.19 16 16 N -0.61 -8.96 3.01 -176.18 -0.53 -9.49 16 17 C 0.53 8.17 5.45 -15.01 -0.08 8.09 16 18 O -0.53 -10.30 13.53 5.12 0.07 -10.23 16 19 C -0.24 -2.72 8.45 -39.27 -0.33 -3.05 16 20 C 0.01 0.09 9.93 -39.21 -0.39 -0.30 16 21 C 0.01 0.17 5.52 -83.91 -0.46 -0.30 16 22 C -0.16 -2.06 10.86 -38.98 -0.42 -2.48 16 23 C -0.21 -2.80 10.81 -39.97 -0.43 -3.23 16 24 C 0.02 0.24 11.90 -16.79 -0.20 0.04 16 25 N -0.52 -7.67 4.44 -10.57 -0.05 -7.71 16 26 H 0.41 6.33 7.25 -40.82 -0.30 6.03 16 27 C 0.12 2.13 5.63 -3.95 -0.02 2.11 16 28 C 0.16 3.12 2.77 -67.83 -0.19 2.93 16 29 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.05 1.37 7.30 -51.93 -0.38 0.99 16 32 H 0.04 1.00 7.78 -51.93 -0.40 0.60 16 33 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.82 7.97 -51.93 -0.41 0.41 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.70 5.68 -51.93 -0.29 0.40 16 39 H 0.14 1.12 6.85 -52.49 -0.36 0.76 16 40 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 42 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 43 H 0.16 1.94 8.06 -52.49 -0.42 1.51 16 44 H 0.09 1.90 6.81 -51.93 -0.35 1.55 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -32.64 353.27 -10.18 -42.83 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.66 Total: 7.03 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -3.36 Total: -3.80 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.53 Total: -58.32 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.64 -10.18 -42.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042029277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.686 kcal (2) G-P(sol) polarization free energy of solvation -32.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds