Wall clock time and date at job start Tue Mar 31 2020 11:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99891 * 2 1 4 4 H 1.48494 * 109.46738 * 274.98469 * 3 2 1 5 5 H 1.48506 * 109.47192 * 34.98222 * 3 2 1 6 6 H 1.48495 * 109.47137 * 154.98266 * 3 2 1 7 7 C 1.38813 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99901 * 187.03201 * 7 2 1 9 9 N 1.36934 * 119.99778 * 7.03073 * 7 2 1 10 10 C 1.48150 * 126.40220 * 6.77111 * 9 7 2 11 11 C 1.55300 * 107.04696 * 175.03100 * 10 9 7 12 12 C 1.53698 * 101.81117 * 337.55604 * 11 10 9 13 13 H 1.09000 * 111.11327 * 281.39530 * 12 11 10 14 14 C 1.51913 * 115.01624 * 153.45732 * 12 11 10 15 15 C 1.53888 * 107.33505 * 184.56342 * 14 12 11 16 16 N 1.46597 * 110.68502 * 51.81366 * 15 14 12 17 17 C 1.34777 * 119.75824 * 132.27484 * 16 15 14 18 18 O 1.21781 * 119.99962 * 175.11164 * 17 16 15 19 19 C 1.41516 * 119.99837 * 355.11194 * 17 16 15 20 20 C 1.35619 * 119.99712 * 217.72111 * 19 17 16 21 21 C 1.41672 * 120.00325 * 6.91171 * 20 19 17 22 22 C 1.38277 * 126.25745 * 212.95835 * 21 20 19 23 23 C 1.39798 * 107.07697 * 179.97438 * 22 21 20 24 24 C 1.35509 * 107.90548 * 0.02562 * 23 22 21 25 25 N 1.35750 * 108.90912 * 359.76502 * 24 23 22 26 26 H 0.97009 * 125.68623 * 180.23594 * 25 24 23 27 27 C 1.47797 * 120.48554 * 312.25984 * 16 15 14 28 28 C 1.45509 * 126.39667 * 186.80888 * 9 7 2 29 29 H 1.09003 * 109.56520 * 94.11893 * 28 9 7 30 30 H 0.96997 * 120.00001 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.92186 * 294.38031 * 10 9 7 32 32 H 1.09000 * 109.92244 * 55.48146 * 10 9 7 33 33 H 1.08996 * 110.95922 * 95.68440 * 11 10 9 34 34 H 1.08998 * 110.95789 * 219.38859 * 11 10 9 35 35 H 1.08998 * 109.85533 * 65.11738 * 14 12 11 36 36 H 1.08999 * 109.89282 * 304.03315 * 14 12 11 37 37 H 1.09003 * 109.23148 * 291.51696 * 15 14 12 38 38 H 1.09004 * 109.23237 * 172.11103 * 15 14 12 39 39 H 1.07992 * 120.00247 * 37.71122 * 19 17 16 40 40 H 1.08000 * 119.99813 * 186.91566 * 20 19 17 41 41 H 1.07998 * 126.46508 * 359.94403 * 22 21 20 42 42 H 1.07990 * 126.04445 * 179.97438 * 23 22 21 43 43 H 1.07997 * 125.53868 * 180.02562 * 24 23 22 44 44 H 1.09007 * 110.06340 * 170.49032 * 27 16 15 45 45 H 1.08997 * 110.06530 * 292.05073 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6201 0.8027 6 1 3.5964 1.4121 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0843 -1.2056 0.1150 9 7 1.3334 -2.3836 -0.1441 10 6 -0.1080 -2.5394 -0.4492 11 6 -0.3718 -4.0581 -0.6383 12 6 1.0306 -4.5796 -0.9898 13 1 1.2764 -4.3737 -2.0316 14 6 1.2827 -6.0348 -0.6340 15 6 2.7583 -6.3354 -0.9507 16 7 3.6356 -5.3451 -0.3191 17 6 4.7156 -5.7546 0.3754 18 8 5.4960 -4.9356 0.8263 19 6 4.9427 -7.1363 0.5808 20 6 5.4441 -7.5726 1.7629 21 6 5.6033 -6.6685 2.8419 22 6 6.5953 -6.7103 3.8044 23 6 6.3732 -5.6351 4.6698 24 6 5.2760 -4.9695 4.2343 25 7 4.8014 -5.5846 3.1212 26 1 4.0254 -5.3078 2.6090 27 6 3.3446 -3.9010 -0.4387 28 6 1.8952 -3.7207 -0.0260 29 1 1.7572 -4.0861 0.9916 30 1 -0.4850 0.8400 -0.0004 31 1 -0.7062 -2.1588 0.3788 32 1 -0.3544 -2.0000 -1.3638 33 1 -0.7352 -4.5087 0.2853 34 1 -1.0701 -4.2336 -1.4566 35 1 0.6368 -6.6791 -1.2305 36 1 1.0909 -6.1959 0.4268 37 1 2.9063 -6.3092 -2.0303 38 1 3.0106 -7.3281 -0.5779 39 1 4.7165 -7.8431 -0.2037 40 1 5.7222 -8.6094 1.8817 41 1 7.3912 -7.4368 3.8746 42 1 6.9699 -5.3805 5.5331 43 1 4.8512 -4.0901 4.6953 44 1 3.9959 -3.3321 0.2250 45 1 3.4832 -3.5757 -1.4697 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042029277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:23 Heat of formation + Delta-G solvation = 53.678802 kcal Electronic energy + Delta-G solvation = -27219.616634 eV Core-core repulsion = 23624.628831 eV Total energy + Delta-G solvation = -3594.987803 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.27881 -41.26527 -39.74298 -36.85137 -34.85277 -34.68088 -32.89574 -31.83886 -31.25180 -30.24359 -29.00615 -26.57205 -25.93049 -23.81209 -23.56254 -21.86006 -21.59359 -21.28296 -21.08833 -20.00872 -18.91693 -18.36420 -17.61724 -16.90889 -16.51023 -16.39011 -15.84885 -15.64998 -15.52491 -14.95067 -14.91148 -14.78941 -14.46627 -14.24162 -13.97539 -13.81435 -13.63977 -13.51187 -13.20496 -13.13339 -13.08572 -12.86307 -12.79449 -12.51637 -12.14570 -12.04275 -11.77685 -11.60222 -11.39217 -11.09813 -11.02085 -10.77996 -10.72162 -9.82532 -9.63875 -8.94107 -8.57080 -7.92203 -5.27356 -0.05534 1.39801 1.40137 1.49427 1.50728 1.92835 2.06241 2.31378 2.44806 2.55590 3.26048 3.44977 3.71764 3.87016 3.95223 3.95879 4.09361 4.24753 4.28330 4.28419 4.33127 4.51361 4.52068 4.55915 4.58053 4.69823 4.71757 4.82207 4.87223 4.90937 5.07580 5.09534 5.11840 5.13196 5.23182 5.33934 5.38834 5.45364 5.49672 5.57606 5.65874 5.71261 6.06444 6.14141 6.22302 6.44466 6.58742 7.02633 7.15957 7.71575 8.38774 9.18844 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013085 B = 0.004548 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.295773 B = 6154.684647 C = 7516.307486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.968 3.032 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.612 5.612 10 C 0.178 3.822 11 C -0.121 4.121 12 C -0.098 4.098 13 H 0.074 0.926 14 C -0.109 4.109 15 C 0.102 3.898 16 N -0.604 5.604 17 C 0.529 3.471 18 O -0.585 6.585 19 C -0.240 4.240 20 C 0.017 3.983 21 C -0.004 4.004 22 C -0.170 4.170 23 C -0.219 4.219 24 C -0.014 4.014 25 N -0.533 5.533 26 H 0.406 0.594 27 C 0.130 3.870 28 C 0.150 3.850 29 H 0.007 0.993 30 H 0.248 0.752 31 H 0.013 0.987 32 H 0.006 0.994 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.081 0.919 38 H 0.122 0.878 39 H 0.181 0.819 40 H 0.190 0.810 41 H 0.163 0.837 42 H 0.152 0.848 43 H 0.167 0.833 44 H 0.052 0.948 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.987 -22.205 0.947 23.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.252 4.252 3 Si 0.797 3.203 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.200 1.200 7 C -0.367 4.367 8 H 0.090 0.910 9 N -0.337 5.337 10 C 0.053 3.947 11 C -0.159 4.159 12 C -0.117 4.117 13 H 0.093 0.907 14 C -0.148 4.148 15 C -0.019 4.019 16 N -0.337 5.337 17 C 0.322 3.678 18 O -0.467 6.467 19 C -0.262 4.262 20 C -0.003 4.003 21 C -0.115 4.115 22 C -0.195 4.195 23 C -0.243 4.243 24 C -0.150 4.150 25 N -0.125 5.125 26 H 0.243 0.757 27 C 0.006 3.994 28 C 0.043 3.957 29 H 0.024 0.976 30 H 0.057 0.943 31 H 0.031 0.969 32 H 0.024 0.976 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.131 0.869 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.140 0.860 39 H 0.198 0.802 40 H 0.207 0.793 41 H 0.180 0.820 42 H 0.170 0.830 43 H 0.185 0.815 44 H 0.071 0.929 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.199 -21.506 1.087 22.408 hybrid contribution -0.204 2.342 -0.146 2.356 sum 5.995 -19.164 0.941 20.102 Atomic orbital electron populations 1.70144 1.06086 1.25318 1.57833 1.25527 0.96456 1.00644 1.02552 0.85211 0.77729 0.79892 0.77468 1.21166 1.21726 1.20029 1.19256 0.90863 0.84063 1.42553 0.91031 1.44413 1.06230 1.00348 1.82663 1.21362 0.83756 0.92719 0.96821 1.22583 0.96952 0.94596 1.01755 1.22211 0.95008 0.95789 0.98728 0.90738 1.21783 0.96083 0.94282 1.02604 1.22121 0.89132 0.92113 0.98582 1.48444 1.26217 1.06419 1.52616 1.18095 0.80751 0.91189 0.77724 1.90917 1.46498 1.57123 1.52182 1.22233 1.08698 0.93792 1.01436 1.21198 0.90391 0.99654 0.89076 1.18789 0.98050 0.93300 1.01369 1.21664 1.00257 1.01846 0.95694 1.21067 0.99804 0.99520 1.03870 1.22318 0.99739 1.01187 0.91708 1.42345 1.24915 1.22526 1.22751 0.75712 1.21200 0.96419 0.81373 1.00408 1.21093 0.92662 0.86084 0.95905 0.97591 0.94296 0.96850 0.97589 0.91126 0.89544 0.86873 0.91551 0.90113 0.85998 0.80208 0.79331 0.81957 0.83039 0.81527 0.92940 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.52 10.61 21.65 0.23 -57.29 16 2 C -0.06 -3.38 5.46 84.86 0.46 -2.92 16 3 Si 0.97 47.39 29.56 68.60 2.03 49.42 16 4 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.24 -13.68 9.89 84.03 0.83 -12.85 16 8 H 0.07 4.09 7.37 -2.91 -0.02 4.07 16 9 N -0.61 -31.45 3.35 -669.33 -2.24 -33.69 16 10 C 0.18 8.68 5.45 86.85 0.47 9.15 16 11 C -0.12 -4.07 6.54 31.62 0.21 -3.87 16 12 C -0.10 -2.97 2.61 -10.10 -0.03 -3.00 16 13 H 0.07 2.34 8.13 -2.39 -0.02 2.33 16 14 C -0.11 -2.14 5.71 30.54 0.17 -1.96 16 15 C 0.10 1.81 6.20 86.66 0.54 2.35 16 16 N -0.60 -16.88 3.01 -829.48 -2.50 -19.38 16 17 C 0.53 15.42 5.45 85.05 0.46 15.89 16 18 O -0.58 -22.97 13.53 -4.61 -0.06 -23.03 16 19 C -0.24 -4.53 8.45 22.47 0.19 -4.34 16 20 C 0.02 0.30 9.93 22.51 0.22 0.52 16 21 C 0.00 -0.10 5.52 39.08 0.22 0.12 16 22 C -0.17 -4.12 10.86 22.66 0.25 -3.87 16 23 C -0.22 -5.66 10.81 22.02 0.24 -5.42 16 24 C -0.01 -0.41 11.90 83.46 0.99 0.59 16 25 N -0.53 -15.88 4.44 -187.34 -0.83 -16.71 16 26 H 0.41 12.85 7.25 -92.70 -0.67 12.18 16 27 C 0.13 4.94 5.63 85.73 0.48 5.43 16 28 C 0.15 6.04 2.77 45.59 0.13 6.17 16 29 H 0.01 0.28 7.90 -2.39 -0.02 0.26 16 30 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 31 H 0.01 0.74 7.30 -2.38 -0.02 0.72 16 32 H 0.01 0.31 7.78 -2.39 -0.02 0.30 16 33 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.47 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.37 7.97 -2.39 -0.02 1.35 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.12 1.28 5.68 -2.38 -0.01 1.27 16 39 H 0.18 1.77 6.85 -2.91 -0.02 1.75 16 40 H 0.19 1.58 8.06 -2.91 -0.02 1.55 16 41 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 42 H 0.15 3.20 8.06 -2.92 -0.02 3.18 16 43 H 0.17 4.31 8.06 -2.91 -0.02 4.29 16 44 H 0.05 2.37 6.81 -2.38 -0.02 2.35 16 45 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -78.27 353.27 2.79 -75.48 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.32 Total: 23.21 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.84 Total: 1.98 kcal Atomic # 7 Polarization: -121.72 SS G_CDS: -5.34 Total: -127.06 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.06 Total: -23.03 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Total: -78.27 2.79 -75.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042029277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.158 kcal (2) G-P(sol) polarization free energy of solvation -78.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds