Wall clock time and date at job start Tue Mar 31 2020 11:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99986 * 2 1 4 4 H 1.48502 * 109.47180 * 269.99440 * 3 2 1 5 5 H 1.48502 * 109.47335 * 29.99109 * 3 2 1 6 6 H 1.48504 * 109.47265 * 149.99560 * 3 2 1 7 7 C 1.38813 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99506 * 185.15100 * 7 2 1 9 9 N 1.36930 * 119.99886 * 5.15432 * 7 2 1 10 10 C 1.48301 * 128.20818 * 212.93011 * 9 7 2 11 11 H 1.08993 * 112.20576 * 343.87713 * 10 9 7 12 12 C 1.54606 * 104.26196 * 221.61895 * 10 9 7 13 13 C 1.54316 * 104.74900 * 334.86572 * 12 10 9 14 14 C 1.48300 * 128.21175 * 32.93574 * 9 7 2 15 15 H 1.08992 * 112.20492 * 16.73023 * 14 9 7 16 16 C 1.53700 * 107.27098 * 252.57772 * 14 9 7 17 17 C 1.53150 * 108.88189 * 295.99308 * 16 14 9 18 18 H 1.08997 * 109.40130 * 173.93392 * 17 16 14 19 19 C 1.53002 * 109.43511 * 293.83009 * 17 16 14 20 20 N 1.46499 * 109.47116 * 179.83224 * 19 17 16 21 21 C 1.34774 * 120.00027 * 180.27041 * 20 19 17 22 22 O 1.21512 * 120.00228 * 359.72815 * 21 20 19 23 23 C 1.48172 * 119.99941 * 179.72436 * 21 20 19 24 24 C 1.39305 * 119.72019 * 180.02562 * 23 21 20 25 25 C 1.38593 * 119.05823 * 179.97438 * 24 23 21 26 26 C 1.38632 * 118.48697 * 0.02562 * 25 24 23 27 27 C 1.38558 * 119.35038 * 359.97438 * 26 25 24 28 28 N 1.31519 * 120.90411 * 359.74239 * 27 26 25 29 29 C 1.53152 * 109.68806 * 53.89596 * 17 16 14 30 30 H 0.96999 * 119.99646 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.38344 * 93.67836 * 12 10 9 32 32 H 1.09003 * 110.38378 * 216.04776 * 12 10 9 33 33 H 1.09000 * 110.37792 * 241.17297 * 13 12 10 34 34 H 1.08998 * 110.38111 * 118.81582 * 13 12 10 35 35 H 1.08996 * 109.56991 * 176.17896 * 16 14 9 36 36 H 1.08997 * 109.57199 * 55.81158 * 16 14 9 37 37 H 1.08995 * 109.47407 * 59.83329 * 19 17 16 38 38 H 1.08994 * 109.46867 * 299.83205 * 19 17 16 39 39 H 0.97002 * 119.99951 * 0.02562 * 20 19 17 40 40 H 1.07995 * 120.47751 * 359.96100 * 24 23 21 41 41 H 1.07996 * 120.75580 * 180.02562 * 25 24 23 42 42 H 1.07999 * 120.31822 * 179.97438 * 26 25 24 43 43 H 1.08001 * 119.54550 * 180.02562 * 27 26 25 44 44 H 1.08992 * 109.57145 * 65.92113 * 29 17 16 45 45 H 1.08996 * 109.56870 * 186.29318 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6528 0.6998 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0870 -1.2040 0.0845 9 7 1.3297 -2.3856 -0.1055 10 6 1.6698 -3.6966 0.4986 11 1 2.7024 -3.7349 0.8453 12 6 1.3790 -4.7199 -0.6233 13 6 0.3249 -4.0336 -1.5174 14 6 0.0779 -2.6603 -0.8516 15 1 -0.1453 -1.8828 -1.5821 16 6 -1.0427 -2.8349 0.1858 17 6 -0.7381 -4.0680 1.0415 18 1 -1.4683 -4.1385 1.8477 19 6 -0.8175 -5.3239 0.1713 20 7 -0.5223 -6.5036 0.9883 21 6 -0.5285 -7.7296 0.4286 22 8 -0.7838 -7.8570 -0.7525 23 6 -0.2240 -8.9221 1.2536 24 6 -0.2315 -10.1866 0.6691 25 6 0.0558 -11.2925 1.4534 26 6 0.3403 -11.0952 2.7958 27 6 0.3297 -9.8087 3.3103 28 7 0.0591 -8.7761 2.5420 29 6 0.6679 -3.9484 1.6367 30 1 -0.4849 0.8401 -0.0004 31 1 2.2847 -4.9254 -1.1938 32 1 0.9774 -5.6414 -0.2019 33 1 -0.5952 -4.6176 -1.5359 34 1 0.7121 -3.9016 -2.5277 35 1 -1.9955 -2.9719 -0.3256 36 1 -1.0917 -1.9517 0.8225 37 1 -0.0911 -5.2516 -0.6381 38 1 -1.8200 -5.4133 -0.2470 39 1 -0.3189 -6.4019 1.9313 40 1 -0.4582 -10.3035 -0.3803 41 1 0.0581 -12.2853 1.0285 42 1 0.5678 -11.9360 3.4342 43 1 0.5513 -9.6513 4.3556 44 1 0.6972 -3.1161 2.3397 45 1 0.9260 -4.8734 2.1523 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048497836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:38 Heat of formation + Delta-G solvation = 101.199853 kcal Electronic energy + Delta-G solvation = -27188.867877 eV Core-core repulsion = 23595.940742 eV Total energy + Delta-G solvation = -3592.927136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.77044 -41.31512 -39.63231 -36.23256 -34.61217 -33.53887 -32.92443 -32.46261 -32.16554 -31.34475 -28.39008 -25.97509 -24.95166 -24.70909 -24.28865 -22.25685 -21.89654 -20.93912 -20.50315 -19.22198 -18.64548 -17.73636 -17.44409 -16.90405 -16.56032 -16.35111 -16.08763 -15.90318 -15.39169 -14.87385 -14.56216 -14.49288 -14.40128 -14.14423 -14.02488 -13.69247 -13.33569 -13.12968 -13.08394 -12.85493 -12.81899 -12.71422 -12.47305 -12.28570 -11.96096 -11.61078 -11.36683 -11.22524 -10.99752 -10.90962 -10.88055 -10.74949 -10.51888 -10.44920 -10.17924 -9.48770 -8.49929 -7.86253 -5.32131 -0.30299 0.30958 1.47020 1.47576 1.56245 1.77456 2.16821 2.50163 2.93386 3.20999 3.31298 3.61667 3.87235 3.95197 3.95945 4.01978 4.06668 4.10785 4.15436 4.24635 4.28769 4.38433 4.55142 4.56771 4.61040 4.73028 4.78384 4.82116 4.90961 4.97387 5.03328 5.10029 5.12935 5.18952 5.20767 5.30594 5.40284 5.49015 5.53695 5.55816 5.63002 5.69295 5.74072 5.97643 6.35820 6.47780 6.86002 7.11732 7.19317 7.73590 8.65664 9.25159 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.030646 B = 0.003175 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.439337 B = 8815.595234 C = 9082.447886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.039 4.039 3 Si 0.967 3.033 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.272 1.272 7 C -0.248 4.248 8 H 0.061 0.939 9 N -0.601 5.601 10 C 0.142 3.858 11 H 0.062 0.938 12 C -0.149 4.149 13 C -0.163 4.163 14 C 0.183 3.817 15 H 0.043 0.957 16 C -0.105 4.105 17 C -0.075 4.075 18 H 0.064 0.936 19 C 0.012 3.988 20 N -0.693 5.693 21 C 0.558 3.442 22 O -0.572 6.572 23 C 0.052 3.948 24 C -0.124 4.124 25 C -0.079 4.079 26 C -0.137 4.137 27 C 0.087 3.913 28 N -0.481 5.481 29 C -0.113 4.113 30 H 0.248 0.752 31 H 0.056 0.944 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.058 0.942 37 H 0.188 0.812 38 H 0.049 0.951 39 H 0.411 0.589 40 H 0.143 0.857 41 H 0.174 0.826 42 H 0.180 0.820 43 H 0.190 0.810 44 H 0.038 0.962 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 -23.626 6.470 24.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.236 4.236 3 Si 0.796 3.204 4 H -0.215 1.215 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.079 0.921 9 N -0.323 5.323 10 C 0.036 3.964 11 H 0.081 0.919 12 C -0.187 4.187 13 C -0.201 4.201 14 C 0.076 3.924 15 H 0.061 0.939 16 C -0.145 4.145 17 C -0.094 4.094 18 H 0.082 0.918 19 C -0.108 4.108 20 N -0.344 5.344 21 C 0.344 3.656 22 O -0.452 6.452 23 C -0.085 4.085 24 C -0.146 4.146 25 C -0.105 4.105 26 C -0.156 4.156 27 C -0.073 4.073 28 N -0.193 5.193 29 C -0.152 4.152 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.203 0.797 38 H 0.068 0.932 39 H 0.248 0.752 40 H 0.161 0.839 41 H 0.192 0.808 42 H 0.197 0.803 43 H 0.207 0.793 44 H 0.057 0.943 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.795 -22.529 5.984 23.324 hybrid contribution 0.112 0.888 0.089 0.899 sum -0.684 -21.641 6.073 22.488 Atomic orbital electron populations 1.70057 1.06133 1.25409 1.54846 1.25909 0.96370 1.00882 1.00471 0.85282 0.78015 0.79816 0.77316 1.21516 1.22008 1.19653 1.19079 0.89890 0.83471 1.45351 0.92091 1.45181 1.27054 1.05071 1.55043 1.21743 0.96282 0.86167 0.92258 0.91938 1.23310 0.98365 0.99443 0.97619 1.23444 0.99756 0.98158 0.98711 1.21136 0.87162 0.92142 0.91934 0.93896 1.21906 0.97300 0.96719 0.98567 1.21118 0.97165 0.93674 0.97393 0.91798 1.24980 1.04609 0.82768 0.98402 1.46113 1.68217 1.05596 1.14449 1.18316 0.77275 0.83492 0.86485 1.90741 1.51229 1.86560 1.16628 1.21013 1.02532 0.93524 0.91445 1.22281 0.97656 0.92196 1.02422 1.22056 0.94658 0.99816 0.93965 1.22844 0.96915 0.99536 0.96308 1.23437 0.94825 0.88169 1.00876 1.67505 1.10298 1.37065 1.04441 1.22028 0.95360 0.99898 0.97929 0.94287 0.92551 0.87348 0.87628 0.92626 0.93485 0.92334 0.79722 0.93245 0.75200 0.83934 0.80821 0.80299 0.79334 0.94314 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.22 10.35 21.65 0.22 -53.00 16 2 C -0.04 -2.20 5.43 84.86 0.46 -1.74 16 3 Si 0.97 45.25 29.56 68.60 2.03 47.28 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.25 -13.82 10.29 84.03 0.87 -12.95 16 8 H 0.06 3.36 7.83 -2.91 -0.02 3.34 16 9 N -0.60 -30.20 2.74 -637.22 -1.74 -31.94 16 10 C 0.14 5.87 4.32 45.43 0.20 6.07 16 11 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 12 C -0.15 -5.42 5.72 31.59 0.18 -5.24 16 13 C -0.16 -6.26 5.72 31.59 0.18 -6.08 16 14 C 0.18 8.56 3.10 45.43 0.14 8.70 16 15 H 0.04 2.31 7.52 -2.39 -0.02 2.29 16 16 C -0.11 -4.56 5.18 30.88 0.16 -4.40 16 17 C -0.07 -2.68 2.77 -10.69 -0.03 -2.71 16 18 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 19 C 0.01 0.38 2.70 86.38 0.23 0.62 16 20 N -0.69 -20.28 4.35 -465.67 -2.03 -22.31 16 21 C 0.56 17.00 7.55 86.88 0.66 17.66 16 22 O -0.57 -20.46 16.32 -3.75 -0.06 -20.53 16 23 C 0.05 1.28 6.75 41.91 0.28 1.56 16 24 C -0.12 -2.43 9.63 22.61 0.22 -2.21 16 25 C -0.08 -0.91 10.17 22.45 0.23 -0.68 16 26 C -0.14 -1.24 10.11 22.44 0.23 -1.01 16 27 C 0.09 1.19 11.18 84.82 0.95 2.14 16 28 N -0.48 -10.43 9.54 -184.92 -1.76 -12.20 16 29 C -0.11 -4.19 5.27 30.88 0.16 -4.03 16 30 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 31 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.11 3.64 3.91 -2.39 -0.01 3.63 16 33 H 0.11 3.74 4.85 -2.39 -0.01 3.73 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.06 3.01 6.80 -2.39 -0.02 2.99 16 37 H 0.19 6.39 1.12 -109.43 -0.12 6.26 16 38 H 0.05 1.66 8.01 -2.39 -0.02 1.64 16 39 H 0.41 11.06 6.62 -92.71 -0.61 10.45 16 40 H 0.14 2.83 7.64 -2.91 -0.02 2.81 16 41 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 43 H 0.19 1.38 8.06 -2.91 -0.02 1.35 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.07 2.22 6.69 -2.39 -0.02 2.21 16 Total: -1.00 -69.22 342.40 2.06 -67.16 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: 0.29 Total: 29.84 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 5.11 Total: -4.31 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -5.31 Total: -119.45 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -0.06 Total: -20.53 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -69.22 2.06 -67.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048497836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.359 kcal (2) G-P(sol) polarization free energy of solvation -69.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds