Wall clock time and date at job start Tue Mar 31 2020 11:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99956 * 2 1 4 4 H 1.48500 * 109.47224 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47412 * 300.00440 * 3 2 1 6 6 H 1.48498 * 109.47040 * 59.99987 * 3 2 1 7 7 C 1.38806 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00293 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.47165 * 125.25641 * 359.13370 * 9 7 2 11 11 C 1.53687 * 107.73605 * 180.39825 * 10 9 7 12 12 H 1.08998 * 113.06272 * 254.95105 * 11 10 9 13 13 C 1.53727 * 109.34175 * 128.69706 * 11 10 9 14 14 N 1.46667 * 107.94427 * 266.25834 * 13 11 10 15 15 C 1.34778 * 125.33905 * 180.54521 * 14 13 11 16 16 O 1.21287 * 119.99722 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00016 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.46895 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.46890 * 179.97438 * 18 17 15 20 20 C 1.38654 * 120.78409 * 90.00032 * 19 18 17 21 21 C 1.38209 * 119.15786 * 180.02562 * 20 19 18 22 22 N 1.31870 * 120.76375 * 0.26353 * 21 20 19 23 23 C 1.31872 * 121.72489 * 359.46946 * 22 21 20 24 24 C 1.38200 * 120.76402 * 0.52682 * 23 22 21 25 25 C 1.46774 * 109.32381 * 0.80708 * 14 13 11 26 26 C 1.54160 * 106.52432 * 341.08804 * 25 14 13 27 27 H 1.09004 * 113.24447 * 266.01639 * 26 25 14 28 28 C 1.46749 * 125.32745 * 180.02562 * 9 7 2 29 29 H 0.96996 * 120.00021 * 359.97438 * 1 2 3 30 30 H 1.09010 * 108.94914 * 61.38279 * 10 9 7 31 31 H 1.08998 * 110.84444 * 300.50905 * 10 9 7 32 32 H 1.08994 * 109.77430 * 146.63171 * 13 11 10 33 33 H 1.09000 * 109.76851 * 25.87563 * 13 11 10 34 34 H 1.08996 * 109.47192 * 59.99937 * 17 15 14 35 35 H 1.09002 * 109.46598 * 299.99576 * 17 15 14 36 36 H 1.08996 * 109.46980 * 60.00140 * 18 17 15 37 37 H 1.08997 * 109.47418 * 299.99880 * 18 17 15 38 38 H 1.07996 * 120.42251 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.61346 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.61160 * 180.27376 * 23 22 21 41 41 H 1.08003 * 120.41583 * 179.72635 * 24 23 22 42 42 H 1.08991 * 110.03385 * 100.51226 * 25 14 13 43 43 H 1.09006 * 110.02673 * 221.93258 * 25 14 13 44 44 H 1.09001 * 110.00973 * 42.34617 * 28 9 7 45 45 H 1.08998 * 110.00877 * 280.97284 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1397 -2.5230 0.0182 11 6 -0.4717 -4.0235 0.0211 12 1 -0.8306 -4.3833 -0.9431 13 6 -1.4525 -4.3257 1.1656 14 7 -0.6692 -4.7380 2.3350 15 6 -1.1809 -5.0942 3.5300 16 8 -2.3815 -5.0889 3.7014 17 6 -0.2611 -5.4979 4.6534 18 6 -1.0905 -5.8510 5.8896 19 6 -0.1707 -6.2553 7.0129 20 6 0.3190 -5.3122 7.9035 21 6 1.1607 -5.7201 8.9210 22 7 1.5024 -6.9876 9.0464 23 6 1.0519 -7.9122 8.2210 24 6 0.2064 -7.5790 7.1798 25 6 0.7596 -4.6958 2.0019 26 6 0.8516 -4.7082 0.4631 27 1 0.9785 -5.7080 0.0478 28 6 1.9382 -3.7215 -0.0005 29 1 -0.4850 0.8400 0.0004 30 1 -0.5496 -2.0566 -0.8779 31 1 -0.5614 -2.0504 0.9052 32 1 -2.1265 -5.1301 0.8710 33 1 -2.0279 -3.4311 1.4040 34 1 0.4086 -4.6710 4.8896 35 1 0.3253 -6.3649 4.3490 36 1 -1.7605 -6.6777 5.6537 37 1 -1.6766 -4.9838 6.1938 38 1 0.0461 -4.2721 7.8035 39 1 1.5468 -4.9916 9.6186 40 1 1.3504 -8.9411 8.3580 41 1 -0.1557 -8.3402 6.5045 42 1 1.2087 -3.7852 2.3982 43 1 1.2645 -5.5706 2.4120 44 1 2.7818 -3.7445 0.6894 45 1 2.2710 -3.9791 -1.0060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048913881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:50 Heat of formation + Delta-G solvation = 23.579623 kcal Electronic energy + Delta-G solvation = -25907.296184 eV Core-core repulsion = 22311.003183 eV Total energy + Delta-G solvation = -3596.293001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.50911 -40.09053 -38.32620 -35.07915 -34.83011 -32.34781 -31.42785 -31.18083 -30.03558 -29.44787 -26.21997 -25.53821 -24.82243 -23.68662 -22.87826 -21.60814 -20.16161 -19.35032 -19.07200 -17.39187 -16.85722 -16.72275 -16.38774 -16.02704 -15.74527 -15.38733 -14.87576 -14.47726 -14.07943 -13.98837 -13.75770 -13.60830 -13.27984 -12.95552 -12.63151 -12.61082 -12.31156 -12.06107 -11.93600 -11.90036 -11.53039 -11.51107 -11.15223 -10.92527 -10.87230 -10.46230 -10.15597 -10.10115 -9.94160 -9.87663 -9.72198 -9.68715 -9.54902 -9.39188 -8.66017 -8.36579 -6.89326 -5.77512 -3.11552 0.89942 0.99775 2.76371 3.17605 3.35994 3.41692 3.44222 3.59367 4.22819 4.30797 4.44707 4.51073 4.68255 4.78403 4.84865 4.90213 4.92348 4.97261 5.12589 5.20248 5.34081 5.43386 5.45641 5.50307 5.53599 5.60675 5.64764 5.66673 5.77738 5.82924 5.91825 5.93174 6.13301 6.16685 6.23774 6.33354 6.47175 6.49533 6.52581 6.58365 6.76026 7.50857 7.52339 7.73534 7.73818 7.76490 8.20038 8.30401 9.15811 9.76783 10.40100 11.33999 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.003012 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.211788 B = 9295.164734 C =10151.536360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.912 3.088 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.230 4.230 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.185 3.815 11 C -0.124 4.124 12 H 0.091 0.909 13 C 0.120 3.880 14 N -0.607 5.607 15 C 0.526 3.474 16 O -0.550 6.550 17 C -0.129 4.129 18 C -0.068 4.068 19 C -0.035 4.035 20 C -0.169 4.169 21 C 0.099 3.901 22 N -0.492 5.492 23 C 0.097 3.903 24 C -0.171 4.171 25 C 0.111 3.889 26 C -0.111 4.111 27 H 0.089 0.911 28 C 0.146 3.854 29 H 0.252 0.748 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.135 0.865 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.037 0.963 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 -15.118 10.705 18.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.060 3.940 11 C -0.143 4.143 12 H 0.109 0.891 13 C -0.002 4.002 14 N -0.340 5.340 15 C 0.314 3.686 16 O -0.429 6.429 17 C -0.169 4.169 18 C -0.105 4.105 19 C -0.043 4.043 20 C -0.189 4.189 21 C -0.057 4.057 22 N -0.201 5.201 23 C -0.059 4.059 24 C -0.191 4.191 25 C -0.011 4.011 26 C -0.131 4.131 27 H 0.107 0.893 28 C 0.020 3.980 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.173 0.827 40 H 0.172 0.828 41 H 0.152 0.848 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.055 0.945 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.412 -15.139 11.536 19.038 hybrid contribution -0.043 1.218 -0.791 1.453 sum 0.369 -13.921 10.744 17.589 Atomic orbital electron populations 1.69963 1.04878 1.25024 1.56904 1.24806 0.95718 0.97735 1.02072 0.86050 0.78711 0.83747 0.77269 1.20488 1.21724 1.21768 1.19076 0.90456 0.82301 1.44021 0.90330 1.44362 1.01462 0.99923 1.87278 1.21212 0.84463 0.86734 1.01571 1.23164 0.93775 1.00488 0.96903 0.89109 1.21822 0.94002 0.99716 0.84704 1.48290 1.08341 1.65672 1.11664 1.20164 0.88846 0.77244 0.82302 1.90689 1.15691 1.54604 1.81881 1.21585 0.98591 1.03518 0.93212 1.20393 0.95812 1.03548 0.90785 1.20384 0.95165 0.93369 0.95370 1.22152 0.99443 1.00924 0.96349 1.22780 0.94040 0.92805 0.96124 1.67677 1.23080 1.02030 1.27335 1.22756 0.93472 0.98996 0.90694 1.22093 1.00193 0.96689 1.00082 1.22127 0.81229 1.01712 0.96078 1.22935 0.97317 0.99143 0.93696 0.89302 1.21142 0.93634 0.85703 0.97557 0.93728 0.93503 0.93189 0.92343 0.90894 0.88610 0.88894 0.89664 0.89524 0.84582 0.82747 0.82847 0.84759 0.90281 0.91676 0.94521 0.96101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.36 10.25 55.49 0.57 -25.80 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.28 16 3 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.23 -6.15 10.25 -15.06 -0.15 -6.31 16 8 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.60 -14.47 3.39 -171.51 -0.58 -15.05 16 10 C 0.18 4.23 4.77 -3.32 -0.02 4.22 16 11 C -0.12 -2.13 4.01 -88.60 -0.36 -2.49 16 12 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 13 C 0.12 2.01 6.23 -3.57 -0.02 1.99 16 14 N -0.61 -9.55 3.31 -172.17 -0.57 -10.12 16 15 C 0.53 8.02 7.84 -10.98 -0.09 7.94 16 16 O -0.55 -10.11 16.29 5.55 0.09 -10.02 16 17 C -0.13 -1.43 4.71 -27.88 -0.13 -1.56 16 18 C -0.07 -0.70 4.68 -27.88 -0.13 -0.83 16 19 C -0.03 -0.33 5.17 -104.32 -0.54 -0.87 16 20 C -0.17 -1.57 9.82 -39.44 -0.39 -1.96 16 21 C 0.10 0.95 11.18 -17.55 -0.20 0.75 16 22 N -0.49 -5.33 10.36 -13.25 -0.14 -5.47 16 23 C 0.10 0.88 11.18 -17.55 -0.20 0.69 16 24 C -0.17 -1.48 9.82 -39.45 -0.39 -1.87 16 25 C 0.11 1.62 5.87 -3.29 -0.02 1.60 16 26 C -0.11 -1.71 4.14 -88.25 -0.37 -2.07 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 C 0.15 2.74 6.41 -3.43 -0.02 2.72 16 29 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 30 H 0.05 1.21 7.40 -51.92 -0.38 0.83 16 31 H 0.05 1.30 6.58 -51.93 -0.34 0.96 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.07 1.37 7.44 -51.93 -0.39 0.98 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 0.86 7.88 -51.93 -0.41 0.45 16 36 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 37 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.16 1.10 8.06 -52.49 -0.42 0.68 16 40 H 0.15 0.99 8.06 -52.48 -0.42 0.56 16 41 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 42 H 0.08 1.34 7.76 -51.93 -0.40 0.93 16 43 H 0.06 0.75 7.61 -51.93 -0.40 0.35 16 44 H 0.04 0.66 7.97 -51.93 -0.41 0.25 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -32.40 363.87 -10.20 -42.59 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.92 Total: 0.11 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -3.10 Total: 1.67 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.72 Total: -56.43 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.40 -10.20 -42.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048913881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.174 kcal (2) G-P(sol) polarization free energy of solvation -32.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds