Wall clock time and date at job start Tue Mar 31 2020 11:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99956 * 2 1 4 4 H 1.48500 * 109.47224 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47412 * 300.00440 * 3 2 1 6 6 H 1.48498 * 109.47040 * 59.99987 * 3 2 1 7 7 C 1.38806 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00293 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00012 * 359.97438 * 7 2 1 10 10 C 1.47165 * 125.25641 * 359.13370 * 9 7 2 11 11 C 1.53687 * 107.73605 * 180.39825 * 10 9 7 12 12 H 1.08998 * 113.06272 * 254.95105 * 11 10 9 13 13 C 1.53727 * 109.34175 * 128.69706 * 11 10 9 14 14 N 1.46667 * 107.94427 * 266.25834 * 13 11 10 15 15 C 1.34778 * 125.33905 * 180.54521 * 14 13 11 16 16 O 1.21287 * 119.99722 * 359.97438 * 15 14 13 17 17 C 1.50700 * 120.00016 * 180.02562 * 15 14 13 18 18 C 1.53003 * 109.46895 * 179.97438 * 17 15 14 19 19 C 1.50703 * 109.46890 * 179.97438 * 18 17 15 20 20 C 1.38654 * 120.78409 * 90.00032 * 19 18 17 21 21 C 1.38209 * 119.15786 * 180.02562 * 20 19 18 22 22 N 1.31870 * 120.76375 * 0.26353 * 21 20 19 23 23 C 1.31872 * 121.72489 * 359.46946 * 22 21 20 24 24 C 1.38200 * 120.76402 * 0.52682 * 23 22 21 25 25 C 1.46774 * 109.32381 * 0.80708 * 14 13 11 26 26 C 1.54160 * 106.52432 * 341.08804 * 25 14 13 27 27 H 1.09004 * 113.24447 * 266.01639 * 26 25 14 28 28 C 1.46749 * 125.32745 * 180.02562 * 9 7 2 29 29 H 0.96996 * 120.00021 * 359.97438 * 1 2 3 30 30 H 1.09010 * 108.94914 * 61.38279 * 10 9 7 31 31 H 1.08998 * 110.84444 * 300.50905 * 10 9 7 32 32 H 1.08994 * 109.77430 * 146.63171 * 13 11 10 33 33 H 1.09000 * 109.76851 * 25.87563 * 13 11 10 34 34 H 1.08996 * 109.47192 * 59.99937 * 17 15 14 35 35 H 1.09002 * 109.46598 * 299.99576 * 17 15 14 36 36 H 1.08996 * 109.46980 * 60.00140 * 18 17 15 37 37 H 1.08997 * 109.47418 * 299.99880 * 18 17 15 38 38 H 1.07996 * 120.42251 * 0.02562 * 20 19 18 39 39 H 1.08002 * 119.61346 * 179.97438 * 21 20 19 40 40 H 1.08004 * 119.61160 * 180.27376 * 23 22 21 41 41 H 1.08003 * 120.41583 * 179.72635 * 24 23 22 42 42 H 1.08991 * 110.03385 * 100.51226 * 25 14 13 43 43 H 1.09006 * 110.02673 * 221.93258 * 25 14 13 44 44 H 1.09001 * 110.00973 * 42.34617 * 28 9 7 45 45 H 1.08998 * 110.00877 * 280.97284 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1397 -2.5230 0.0182 11 6 -0.4717 -4.0235 0.0211 12 1 -0.8306 -4.3833 -0.9431 13 6 -1.4525 -4.3257 1.1656 14 7 -0.6692 -4.7380 2.3350 15 6 -1.1809 -5.0942 3.5300 16 8 -2.3815 -5.0889 3.7014 17 6 -0.2611 -5.4979 4.6534 18 6 -1.0905 -5.8510 5.8896 19 6 -0.1707 -6.2553 7.0129 20 6 0.3190 -5.3122 7.9035 21 6 1.1607 -5.7201 8.9210 22 7 1.5024 -6.9876 9.0464 23 6 1.0519 -7.9122 8.2210 24 6 0.2064 -7.5790 7.1798 25 6 0.7596 -4.6958 2.0019 26 6 0.8516 -4.7082 0.4631 27 1 0.9785 -5.7080 0.0478 28 6 1.9382 -3.7215 -0.0005 29 1 -0.4850 0.8400 0.0004 30 1 -0.5496 -2.0566 -0.8779 31 1 -0.5614 -2.0504 0.9052 32 1 -2.1265 -5.1301 0.8710 33 1 -2.0279 -3.4311 1.4040 34 1 0.4086 -4.6710 4.8896 35 1 0.3253 -6.3649 4.3490 36 1 -1.7605 -6.6777 5.6537 37 1 -1.6766 -4.9838 6.1938 38 1 0.0461 -4.2721 7.8035 39 1 1.5468 -4.9916 9.6186 40 1 1.3504 -8.9411 8.3580 41 1 -0.1557 -8.3402 6.5045 42 1 1.2087 -3.7852 2.3982 43 1 1.2645 -5.5706 2.4120 44 1 2.7818 -3.7445 0.6894 45 1 2.2710 -3.9791 -1.0060 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048913881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:49 Heat of formation + Delta-G solvation = 4.057535 kcal Electronic energy + Delta-G solvation = -25908.142725 eV Core-core repulsion = 22311.003183 eV Total energy + Delta-G solvation = -3597.139543 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.57909 -41.01887 -39.67687 -36.58101 -35.75804 -34.11716 -32.37211 -32.08047 -31.20348 -31.07222 -27.66915 -27.03361 -26.11825 -24.34908 -24.24587 -22.43836 -21.82175 -20.75928 -20.26896 -18.86995 -18.28951 -17.61957 -17.36217 -17.08252 -16.71000 -16.45756 -16.26629 -16.03508 -15.51547 -14.95286 -14.83777 -14.67877 -14.46103 -14.33334 -13.88120 -13.63847 -13.58430 -13.37376 -13.26936 -13.10917 -12.95708 -12.75217 -12.68325 -12.64074 -11.95980 -11.93825 -11.87428 -11.85643 -11.51646 -11.34313 -11.02177 -10.70628 -10.46712 -10.39113 -10.04816 -9.65087 -8.86636 -7.84937 -5.19553 0.24300 0.29058 1.45791 1.45986 1.56308 1.57847 2.01917 2.49558 2.89787 3.26778 3.34179 3.51135 3.61538 3.65418 3.81495 3.82878 3.91889 3.95220 4.16060 4.20421 4.23922 4.28145 4.30461 4.33226 4.50958 4.53804 4.64238 4.74183 4.77172 4.78868 4.86384 4.94742 4.96904 5.05974 5.07322 5.11228 5.12364 5.27577 5.41633 5.46520 5.49552 5.64051 5.78094 5.82454 6.21303 6.53411 7.06697 7.10019 7.11429 7.80864 8.42288 9.25281 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.003012 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.211788 B = 9295.164734 C =10151.536360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.297 1.297 7 C -0.234 4.234 8 H 0.086 0.914 9 N -0.625 5.625 10 C 0.198 3.802 11 C -0.113 4.113 12 H 0.113 0.887 13 C 0.124 3.876 14 N -0.611 5.611 15 C 0.521 3.479 16 O -0.587 6.587 17 C -0.118 4.118 18 C -0.060 4.060 19 C -0.042 4.042 20 C -0.177 4.177 21 C 0.088 3.912 22 N -0.518 5.518 23 C 0.090 3.910 24 C -0.168 4.168 25 C 0.114 3.886 26 C -0.093 4.093 27 H 0.135 0.865 28 C 0.139 3.861 29 H 0.243 0.757 30 H 0.004 0.996 31 H 0.007 0.993 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.143 0.857 39 H 0.171 0.829 40 H 0.178 0.822 41 H 0.157 0.843 42 H 0.050 0.950 43 H 0.111 0.889 44 H 0.049 0.951 45 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.409 -17.863 11.033 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.364 4.364 8 H 0.104 0.896 9 N -0.351 5.351 10 C 0.073 3.927 11 C -0.133 4.133 12 H 0.131 0.869 13 C 0.001 3.999 14 N -0.343 5.343 15 C 0.312 3.688 16 O -0.468 6.468 17 C -0.158 4.158 18 C -0.097 4.097 19 C -0.050 4.050 20 C -0.196 4.196 21 C -0.068 4.068 22 N -0.227 5.227 23 C -0.067 4.067 24 C -0.187 4.187 25 C -0.008 4.008 26 C -0.113 4.113 27 H 0.153 0.847 28 C 0.014 3.986 29 H 0.053 0.947 30 H 0.022 0.978 31 H 0.025 0.975 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.161 0.839 39 H 0.188 0.812 40 H 0.195 0.805 41 H 0.175 0.825 42 H 0.068 0.932 43 H 0.129 0.871 44 H 0.067 0.933 45 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 2.310 -17.919 11.864 21.615 hybrid contribution -0.610 2.061 -0.896 2.329 sum 1.700 -15.858 10.968 19.356 Atomic orbital electron populations 1.70207 1.06332 1.24923 1.58723 1.25620 0.96500 1.01028 1.02990 0.85061 0.78435 0.79753 0.76425 1.18608 1.22257 1.22407 1.19487 0.91075 0.83621 1.42169 0.89588 1.44664 1.02090 1.01403 1.86952 1.20847 0.84050 0.90345 0.97487 1.22997 0.95512 0.96446 0.98354 0.86938 1.21656 0.94106 0.98961 0.85199 1.48411 1.08772 1.65474 1.11655 1.20948 0.88956 0.76227 0.82699 1.90672 1.17609 1.56141 1.82410 1.21593 0.97849 1.04696 0.91645 1.20270 0.95740 1.02942 0.90792 1.20366 0.95339 0.94031 0.95285 1.22303 0.99467 1.01457 0.96416 1.23084 0.94147 0.92975 0.96562 1.67702 1.24004 1.02730 1.28313 1.23204 0.93240 0.99842 0.90385 1.22325 0.99540 0.96689 1.00157 1.22158 0.80536 1.02459 0.95670 1.22996 0.94014 1.00070 0.94189 0.84679 1.21387 0.94928 0.83890 0.98426 0.94721 0.97767 0.97514 0.90429 0.94372 0.88160 0.85943 0.89607 0.91059 0.83882 0.81175 0.80513 0.82518 0.93151 0.87060 0.93311 0.95137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.31 10.25 21.65 0.22 -57.08 16 2 C -0.07 -3.86 5.48 84.86 0.47 -3.39 16 3 Si 0.97 45.37 29.55 68.60 2.03 47.40 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 7 C -0.23 -12.63 10.25 84.03 0.86 -11.77 16 8 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 9 N -0.62 -30.11 3.39 -696.55 -2.36 -32.47 16 10 C 0.20 9.41 4.77 86.48 0.41 9.82 16 11 C -0.11 -3.80 4.01 -9.49 -0.04 -3.83 16 12 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 13 C 0.12 4.10 6.23 86.59 0.54 4.64 16 14 N -0.61 -18.22 3.31 -817.02 -2.71 -20.93 16 15 C 0.52 15.18 7.84 87.66 0.69 15.87 16 16 O -0.59 -21.48 16.29 -3.05 -0.05 -21.53 16 17 C -0.12 -2.31 4.71 29.85 0.14 -2.17 16 18 C -0.06 -1.13 4.68 29.85 0.14 -0.99 16 19 C -0.04 -0.72 5.17 -19.67 -0.10 -0.82 16 20 C -0.18 -3.07 9.82 22.36 0.22 -2.85 16 21 C 0.09 1.58 11.18 84.68 0.95 2.52 16 22 N -0.52 -10.39 10.36 -195.84 -2.03 -12.42 16 23 C 0.09 1.41 11.18 84.68 0.95 2.36 16 24 C -0.17 -2.44 9.82 22.36 0.22 -2.22 16 25 C 0.11 2.97 5.87 86.72 0.51 3.47 16 26 C -0.09 -2.54 4.14 -9.26 -0.04 -2.57 16 27 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 28 C 0.14 4.87 6.41 86.64 0.56 5.42 16 29 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.00 0.22 7.40 -2.38 -0.02 0.21 16 31 H 0.01 0.37 6.58 -2.39 -0.02 0.36 16 32 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.04 1.52 7.44 -2.39 -0.02 1.50 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.12 1.71 7.88 -2.39 -0.02 1.69 16 36 H 0.09 1.62 8.06 -2.39 -0.02 1.60 16 37 H 0.07 1.56 8.06 -2.39 -0.02 1.54 16 38 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 40 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 41 H 0.16 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.05 1.62 7.76 -2.39 -0.02 1.61 16 43 H 0.11 1.93 7.61 -2.38 -0.02 1.91 16 44 H 0.05 1.61 7.97 -2.39 -0.02 1.59 16 45 H 0.03 1.04 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -74.45 363.87 2.54 -71.91 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.97 Total: 11.63 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.47 Total: 13.49 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -6.87 Total: -122.90 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -74.45 2.54 -71.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048913881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.967 kcal (2) G-P(sol) polarization free energy of solvation -74.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds