Wall clock time and date at job start Tue Mar 31 2020 10:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99991 * 2 1 4 4 H 1.48506 * 109.47045 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47180 * 299.99309 * 3 2 1 6 6 H 1.48501 * 109.47205 * 59.99674 * 3 2 1 7 7 C 1.38811 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00271 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00226 * 0.02562 * 7 2 1 10 10 C 1.47621 * 125.43814 * 0.83460 * 9 7 2 11 11 C 1.53926 * 106.28305 * 198.68628 * 10 9 7 12 12 H 1.09002 * 113.01217 * 208.13400 * 11 10 9 13 13 C 1.53971 * 109.91794 * 80.85137 * 11 10 9 14 14 N 1.46776 * 106.62673 * 221.55636 * 13 11 10 15 15 C 1.34779 * 125.33520 * 198.51561 * 14 13 11 16 16 O 1.21284 * 119.99582 * 179.97438 * 15 14 13 17 17 C 1.50703 * 120.00101 * 0.02562 * 15 14 13 18 18 C 1.52994 * 109.46921 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47416 * 180.02562 * 18 17 15 20 20 C 1.38666 * 120.42034 * 89.99592 * 19 18 17 21 21 C 1.38631 * 118.42452 * 180.02562 * 20 19 18 22 22 C 1.38233 * 119.15761 * 359.97438 * 21 20 19 23 23 N 1.31857 * 120.76139 * 0.02562 * 22 21 20 24 24 C 1.31878 * 121.72767 * 359.70029 * 23 22 21 25 25 C 1.46663 * 109.32121 * 18.52222 * 14 13 11 26 26 C 1.53716 * 107.94858 * 359.45128 * 25 14 13 27 27 H 1.09004 * 112.56826 * 220.28298 * 26 25 14 28 28 C 1.46632 * 125.33244 * 179.97438 * 9 7 2 29 29 H 0.97005 * 120.00075 * 0.02562 * 1 2 3 30 30 H 1.08995 * 111.08607 * 79.03398 * 10 9 7 31 31 H 1.08999 * 109.35545 * 317.40009 * 10 9 7 32 32 H 1.09003 * 110.02527 * 340.85331 * 13 11 10 33 33 H 1.08996 * 110.02241 * 102.26487 * 13 11 10 34 34 H 1.09000 * 109.46544 * 299.99655 * 17 15 14 35 35 H 1.09002 * 109.46836 * 59.99665 * 17 15 14 36 36 H 1.09006 * 109.47290 * 299.99756 * 18 17 15 37 37 H 1.09006 * 109.47486 * 59.99721 * 18 17 15 38 38 H 1.07997 * 120.79272 * 359.97438 * 20 19 18 39 39 H 1.07990 * 120.42365 * 180.02562 * 21 20 19 40 40 H 1.08004 * 119.61629 * 179.97438 * 22 21 20 41 41 H 1.07997 * 119.62110 * 180.31193 * 24 23 22 42 42 H 1.09013 * 109.76822 * 239.83068 * 25 14 13 43 43 H 1.08998 * 109.77415 * 119.08254 * 25 14 13 44 44 H 1.08994 * 109.76271 * 59.55993 * 28 9 7 45 45 H 1.09002 * 109.76158 * 298.83704 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1439 -2.5281 -0.0175 11 6 -0.4470 -3.9588 0.4627 12 1 -1.3773 -4.3563 0.0570 13 6 -0.3859 -4.0201 2.0000 14 7 0.3037 -5.2694 2.3434 15 6 0.2606 -5.8788 3.5448 16 8 0.8696 -6.9125 3.7226 17 6 -0.5452 -5.2764 4.6668 18 6 -0.4263 -6.1588 5.9109 19 6 -1.2326 -5.5569 7.0327 20 6 -2.5649 -5.9015 7.2033 21 6 -3.2676 -5.3224 8.2486 22 6 -2.6213 -4.4274 9.0805 23 7 -1.3528 -4.1231 8.8883 24 6 -0.6521 -4.6585 7.9077 25 6 1.0471 -5.7505 1.1742 26 6 0.8079 -4.7625 0.0213 27 1 0.6717 -5.2632 -0.9373 28 6 1.9376 -3.7206 0.0005 29 1 -0.4850 0.8401 -0.0004 30 1 -0.5396 -2.3802 -1.0223 31 1 -0.5843 -1.8036 0.6675 32 1 0.1726 -3.1671 2.3856 33 1 -1.3942 -4.0244 2.4137 34 1 -0.1669 -4.2790 4.8908 35 1 -1.5912 -5.2096 4.3676 36 1 -0.8048 -7.1561 5.6865 37 1 0.6197 -6.2261 6.2102 38 1 -3.0439 -6.6037 6.5372 39 1 -4.3066 -5.5680 8.4114 40 1 -3.1619 -3.9716 9.8969 41 1 0.3863 -4.3886 7.7845 42 1 0.6892 -6.7407 0.8916 43 1 2.1111 -5.7954 1.4066 44 1 2.5637 -3.8385 0.8849 45 1 2.5410 -3.8489 -0.8981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048922523.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:38 Heat of formation + Delta-G solvation = 24.081987 kcal Electronic energy + Delta-G solvation = -25908.119219 eV Core-core repulsion = 22311.848002 eV Total energy + Delta-G solvation = -3596.271217 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50853 -40.08899 -38.31205 -35.00070 -34.65275 -32.41394 -32.22673 -30.59422 -30.02923 -29.43554 -26.02793 -25.52498 -24.74781 -23.77404 -22.86024 -21.56140 -20.14672 -19.38632 -19.02057 -17.43371 -17.14619 -16.72633 -16.64343 -16.00851 -15.42461 -14.99936 -14.83241 -14.74058 -14.07027 -13.75859 -13.66127 -13.51884 -13.27813 -13.02690 -12.80913 -12.53410 -12.41312 -12.15085 -11.83994 -11.73626 -11.52654 -11.48934 -11.19883 -10.98823 -10.87062 -10.42962 -10.16131 -10.09317 -10.02016 -9.89113 -9.73632 -9.65355 -9.61431 -9.14170 -8.70018 -8.38314 -6.90337 -5.75102 -3.13622 0.87636 1.05741 2.75950 3.17565 3.36079 3.42573 3.44351 3.60885 4.22126 4.42966 4.45829 4.57834 4.71475 4.76593 4.79690 4.88953 4.94944 5.02579 5.12241 5.21874 5.35420 5.41127 5.44073 5.49171 5.56666 5.63546 5.70065 5.73296 5.84201 5.86842 5.90935 5.96460 6.11493 6.14532 6.23479 6.34430 6.47868 6.49447 6.61796 6.66145 6.79732 7.35921 7.56293 7.72140 7.74639 7.76800 8.24320 8.29452 9.14816 9.75901 10.39194 11.31583 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012863 B = 0.003219 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.190322 B = 8696.672967 C =10107.452287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.223 4.223 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.168 3.832 11 C -0.122 4.122 12 H 0.086 0.914 13 C 0.111 3.889 14 N -0.609 5.609 15 C 0.526 3.474 16 O -0.554 6.554 17 C -0.131 4.131 18 C -0.060 4.060 19 C -0.131 4.131 20 C -0.073 4.073 21 C -0.172 4.172 22 C 0.090 3.910 23 N -0.484 5.484 24 C 0.103 3.897 25 C 0.119 3.881 26 C -0.109 4.109 27 H 0.094 0.906 28 C 0.143 3.857 29 H 0.252 0.748 30 H 0.022 0.978 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.026 0.974 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.186 -12.096 11.108 17.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.351 4.351 8 H 0.096 0.904 9 N -0.328 5.328 10 C 0.043 3.957 11 C -0.142 4.142 12 H 0.104 0.896 13 C -0.011 4.011 14 N -0.342 5.342 15 C 0.315 3.685 16 O -0.433 6.433 17 C -0.171 4.171 18 C -0.098 4.098 19 C -0.133 4.133 20 C -0.099 4.099 21 C -0.191 4.191 22 C -0.067 4.067 23 N -0.192 5.192 24 C -0.054 4.054 25 C -0.003 4.003 26 C -0.129 4.129 27 H 0.113 0.887 28 C 0.017 3.983 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.117 0.883 32 H 0.100 0.900 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.171 0.829 41 H 0.173 0.827 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.044 0.956 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -6.483 -11.838 11.851 17.962 hybrid contribution -0.087 0.360 -0.793 0.875 sum -6.570 -11.479 11.058 17.240 Atomic orbital electron populations 1.69840 1.04848 1.24835 1.57624 1.24767 0.95749 0.97693 1.02283 0.86016 0.78731 0.83595 0.77272 1.20529 1.21739 1.21707 1.19111 0.90549 0.82315 1.43138 0.90392 1.44454 1.01517 0.99852 1.86990 1.21571 0.84780 0.89609 0.99702 1.23226 0.97111 1.00477 0.93424 0.89580 1.22160 0.96434 0.86118 0.96436 1.48371 1.49254 1.25542 1.11011 1.20221 0.81748 0.84136 0.82360 1.90676 1.46328 1.24114 1.82142 1.21623 1.01300 1.00984 0.93176 1.20272 1.00459 0.98527 0.90567 1.20961 0.95245 0.98725 0.98322 1.21542 0.93571 0.98028 0.96780 1.22151 1.01411 0.98941 0.96633 1.22775 0.90827 0.94819 0.98259 1.67703 1.08029 1.23780 1.19651 1.22762 1.00103 0.92464 0.90065 1.21781 0.96517 0.97023 0.85009 1.22780 0.97129 0.95721 0.97224 0.88746 1.21200 0.93365 0.85641 0.98127 0.93735 0.96051 0.88279 0.89982 0.91625 0.88517 0.88901 0.89964 0.89696 0.84814 0.84830 0.82905 0.82681 0.92111 0.91447 0.95649 0.96017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.62 10.15 55.49 0.56 -25.06 16 2 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.22 -5.97 10.25 -15.06 -0.15 -6.13 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -14.51 3.39 -171.23 -0.58 -15.09 16 10 C 0.17 3.73 4.94 -2.95 -0.01 3.72 16 11 C -0.12 -2.05 4.12 -88.35 -0.36 -2.42 16 12 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 13 C 0.11 1.74 5.88 -3.39 -0.02 1.72 16 14 N -0.61 -9.38 3.31 -172.29 -0.57 -9.95 16 15 C 0.53 7.86 7.84 -10.98 -0.09 7.78 16 16 O -0.55 -9.79 16.29 5.55 0.09 -9.70 16 17 C -0.13 -1.48 4.72 -27.88 -0.13 -1.61 16 18 C -0.06 -0.61 4.66 -27.89 -0.13 -0.74 16 19 C -0.13 -1.29 5.15 -104.48 -0.54 -1.83 16 20 C -0.07 -0.64 9.86 -39.28 -0.39 -1.02 16 21 C -0.17 -1.39 10.11 -39.44 -0.40 -1.78 16 22 C 0.09 0.84 11.18 -17.54 -0.20 0.65 16 23 N -0.48 -5.67 10.36 -13.25 -0.14 -5.80 16 24 C 0.10 1.12 10.86 -17.55 -0.19 0.92 16 25 C 0.12 1.83 6.23 -3.58 -0.02 1.81 16 26 C -0.11 -1.77 4.01 -88.60 -0.36 -2.12 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 28 C 0.14 2.84 6.60 -3.61 -0.02 2.82 16 29 H 0.25 6.82 8.31 -40.82 -0.34 6.49 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 2.46 5.98 -51.93 -0.31 2.14 16 32 H 0.08 1.51 7.75 -51.93 -0.40 1.11 16 33 H 0.07 0.87 7.61 -51.93 -0.40 0.48 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 0.92 7.87 -51.93 -0.41 0.51 16 36 H 0.08 0.84 8.05 -51.93 -0.42 0.43 16 37 H 0.08 0.91 8.05 -51.93 -0.42 0.50 16 38 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 41 H 0.16 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 43 H 0.07 1.08 7.44 -51.93 -0.39 0.69 16 44 H 0.03 0.52 7.29 -51.93 -0.38 0.14 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -31.53 363.55 -10.18 -41.71 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -6.89 Total: 0.52 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -3.11 Total: 1.40 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.73 Total: -55.91 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.53 -10.18 -41.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048922523.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.795 kcal (2) G-P(sol) polarization free energy of solvation -31.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds