Wall clock time and date at job start Tue Mar 31 2020 10:43:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86792 * 120.00237 * 2 1
4 4 H 1.48505 * 109.47216 * 180.02562 * 3 2 1
5 5 H 1.48492 * 109.47283 * 300.00125 * 3 2 1
6 6 H 1.48498 * 109.47232 * 60.00372 * 3 2 1
7 7 C 1.38817 * 119.99649 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00011 * 180.02562 * 7 2 1
9 9 N 1.36939 * 119.99785 * 359.97438 * 7 2 1
10 10 C 1.48383 * 126.56522 * 0.03139 * 9 7 2
11 11 C 1.55467 * 106.97605 * 174.47583 * 10 9 7
12 12 C 1.53433 * 101.67578 * 337.40214 * 11 10 9
13 13 H 1.08998 * 111.14785 * 281.18199 * 12 11 10
14 14 C 1.45032 * 126.55804 * 180.02562 * 9 7 2
15 15 H 1.09006 * 108.69918 * 95.89862 * 14 9 7
16 16 C 1.51074 * 119.19167 * 331.22498 * 14 9 7
17 17 C 1.53852 * 107.29452 * 176.07167 * 16 14 9
18 18 C 1.52718 * 111.53507 * 57.00246 * 17 16 14
19 19 N 1.45721 * 116.37308 * 152.71219 * 12 11 10
20 20 C 1.34779 * 122.22914 * 9.88460 * 19 12 11
21 21 O 1.21284 * 119.99900 * 0.02562 * 20 19 12
22 22 C 1.50701 * 120.00117 * 180.02562 * 20 19 12
23 23 C 1.50701 * 109.47117 * 179.97438 * 22 20 19
24 24 C 1.38677 * 120.41750 * 269.72214 * 23 22 20
25 25 C 1.38627 * 118.41796 * 179.77875 * 24 23 22
26 26 C 1.38228 * 119.16228 * 0.47228 * 25 24 23
27 27 N 1.31856 * 120.76188 * 359.76928 * 26 25 24
28 28 C 1.31883 * 121.72525 * 359.97438 * 27 26 25
29 29 H 0.96994 * 119.99439 * 359.97438 * 1 2 3
30 30 H 1.09000 * 109.96031 * 55.09611 * 10 9 7
31 31 H 1.08994 * 109.95926 * 293.85874 * 10 9 7
32 32 H 1.09006 * 110.98924 * 219.30523 * 11 10 9
33 33 H 1.09004 * 110.98442 * 95.49659 * 11 10 9
34 34 H 1.09005 * 109.88427 * 295.54982 * 16 14 9
35 35 H 1.08996 * 109.88602 * 56.56198 * 16 14 9
36 36 H 1.09001 * 109.10608 * 296.44461 * 17 16 14
37 37 H 1.09003 * 109.01813 * 177.50247 * 17 16 14
38 38 H 1.09002 * 109.15976 * 191.00892 * 18 17 16
39 39 H 1.09003 * 109.16219 * 71.77231 * 18 17 16
40 40 H 1.08998 * 109.46977 * 299.99751 * 22 20 19
41 41 H 1.09000 * 109.47098 * 59.99629 * 22 20 19
42 42 H 1.07997 * 120.78924 * 0.02562 * 24 23 22
43 43 H 1.07999 * 120.41949 * 180.21608 * 25 24 23
44 44 H 1.08004 * 119.61821 * 179.78598 * 26 25 24
45 45 H 1.08001 * 119.61505 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.7103 1.3462 -0.0006
5 1 1.8916 2.3963 -1.2124
6 1 1.8916 2.3963 1.2125
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0001
9 7 1.3254 -2.3881 -0.0005
10 6 -0.1487 -2.5576 -0.0007
11 6 -0.4305 -4.0798 -0.1437
12 6 0.8710 -4.5776 -0.7859
13 1 0.8888 -4.3645 -1.8547
14 6 1.9023 -3.7188 -0.0005
15 1 1.9439 -4.0816 1.0265
16 6 3.2560 -3.9350 -0.6354
17 6 3.6443 -5.4043 -0.3953
18 6 2.5919 -6.3605 -0.9524
19 7 1.2341 -5.9639 -0.5219
20 6 0.3887 -6.8272 0.0752
21 8 -0.7166 -6.4586 0.4119
22 6 0.8168 -8.2504 0.3245
23 6 -0.3024 -9.0008 0.9994
24 6 -0.3886 -9.0379 2.3830
25 6 -1.4378 -9.7365 2.9601
26 6 -2.3510 -10.3764 2.1432
27 7 -2.2348 -10.3238 0.8309
28 6 -1.2527 -9.6647 0.2475
29 1 -0.4849 0.8400 0.0004
30 1 -0.5852 -2.0178 -0.8410
31 1 -0.5657 -2.1884 0.9362
32 1 -1.2828 -4.2591 -0.7993
33 1 -0.5861 -4.5413 0.8314
34 1 3.1996 -3.7359 -1.7056
35 1 3.9914 -3.2759 -0.1741
36 1 3.7491 -5.5751 0.6761
37 1 4.5993 -5.6033 -0.8816
38 1 2.8001 -7.3691 -0.5954
39 1 2.6393 -6.3497 -2.0414
40 1 1.0553 -8.7297 -0.6249
41 1 1.6976 -8.2577 0.9666
42 1 0.3419 -8.5314 2.9962
43 1 -1.5381 -9.7836 4.0344
44 1 -3.1693 -10.9257 2.5851
45 1 -1.1900 -9.6444 -0.8305
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049426916.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:43:07
Heat of formation + Delta-G solvation = 38.790929 kcal
Electronic energy + Delta-G solvation = -26824.611630 eV
Core-core repulsion = 23228.978240 eV
Total energy + Delta-G solvation = -3595.633390 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-40.67858 -39.91577 -37.77688 -35.45070 -33.69322 -32.63218 -32.23689 -31.91813
-29.26204 -28.34558 -27.74526 -24.56268 -24.42021 -23.68023 -22.51897 -21.52724
-20.73707 -19.70228 -18.79399 -17.20635 -16.90611 -16.56114 -16.14894 -15.89496
-15.24527 -14.99920 -14.70078 -14.27730 -14.16451 -13.85808 -13.65327 -13.52080
-13.27465 -13.15583 -13.03166 -12.46823 -12.32320 -12.15285 -11.85985 -11.67936
-11.57470 -11.13317 -10.87207 -10.72707 -10.54946 -10.46587 -10.07938 -10.01879
-9.89981 -9.84183 -9.62188 -9.57310 -9.23185 -8.89474 -8.58553 -8.24471
-6.83016 -5.70184 -3.04633 0.98297 1.19094 2.78677 3.12474 3.39633
3.44507 3.47439 3.73299 4.28178 4.48733 4.53123 4.60947 4.64665
4.81637 4.85264 4.89163 5.04708 5.17303 5.23652 5.25749 5.35476
5.42821 5.48161 5.58854 5.61694 5.67411 5.74801 5.85398 5.97632
5.98441 6.07190 6.11763 6.24353 6.27680 6.37421 6.54970 6.57706
6.71032 6.77754 6.89031 7.17365 7.58416 7.64399 7.70287 7.84465
7.86309 8.24921 8.40358 9.19184 9.83137 10.51391 11.41826
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.022688 B = 0.003300 C = 0.003045
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1233.849285 B = 8483.299724 C = 9193.407185
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.919 5.919
2 C -0.008 4.008
3 Si 0.910 3.090
4 H -0.280 1.280
5 H -0.291 1.291
6 H -0.291 1.291
7 C -0.226 4.226
8 H 0.079 0.921
9 N -0.593 5.593
10 C 0.172 3.828
11 C -0.129 4.129
12 C 0.117 3.883
13 H 0.079 0.921
14 C 0.160 3.840
15 H 0.016 0.984
16 C -0.116 4.116
17 C -0.130 4.130
18 C 0.110 3.890
19 N -0.601 5.601
20 C 0.516 3.484
21 O -0.524 6.524
22 C -0.099 4.099
23 C -0.112 4.112
24 C -0.061 4.061
25 C -0.171 4.171
26 C 0.093 3.907
27 N -0.485 5.485
28 C 0.112 3.888
29 H 0.252 0.748
30 H 0.056 0.944
31 H 0.039 0.961
32 H 0.059 0.941
33 H 0.081 0.919
34 H 0.064 0.936
35 H 0.067 0.933
36 H 0.063 0.937
37 H 0.072 0.928
38 H 0.078 0.922
39 H 0.067 0.933
40 H 0.103 0.897
41 H 0.102 0.898
42 H 0.132 0.868
43 H 0.134 0.866
44 H 0.153 0.847
45 H 0.151 0.849
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.378 -20.777 0.893 21.252
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.204 4.204
3 Si 0.741 3.259
4 H -0.205 1.205
5 H -0.218 1.218
6 H -0.218 1.218
7 C -0.355 4.355
8 H 0.097 0.903
9 N -0.317 5.317
10 C 0.047 3.953
11 C -0.168 4.168
12 C 0.013 3.987
13 H 0.097 0.903
14 C 0.051 3.949
15 H 0.033 0.967
16 C -0.155 4.155
17 C -0.168 4.168
18 C -0.013 4.013
19 N -0.334 5.334
20 C 0.303 3.697
21 O -0.400 6.400
22 C -0.140 4.140
23 C -0.114 4.114
24 C -0.088 4.088
25 C -0.191 4.191
26 C -0.064 4.064
27 N -0.194 5.194
28 C -0.045 4.045
29 H 0.062 0.938
30 H 0.074 0.926
31 H 0.057 0.943
32 H 0.078 0.922
33 H 0.099 0.901
34 H 0.082 0.918
35 H 0.085 0.915
36 H 0.081 0.919
37 H 0.091 0.909
38 H 0.096 0.904
39 H 0.086 0.914
40 H 0.121 0.879
41 H 0.120 0.880
42 H 0.150 0.850
43 H 0.152 0.848
44 H 0.171 0.829
45 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 3.092 -20.774 0.574 21.011
hybrid contribution 1.197 1.469 0.536 1.969
sum 4.289 -19.306 1.110 19.807
Atomic orbital electron populations
1.69964 1.04887 1.24942 1.56814 1.24815 0.95675 0.97646 1.02276
0.86074 0.78667 0.83943 0.77241 1.20544 1.21781 1.21789 1.19029
0.90336 0.82211 1.43878 0.90316 1.44098 1.01810 0.99341 1.86495
1.21744 0.83610 0.88844 1.01061 1.22956 0.94590 0.97837 1.01367
1.22410 0.98708 0.78509 0.99109 0.90311 1.20737 0.91395 0.87211
0.95602 0.96653 1.21434 0.98595 0.94154 1.01317 1.21898 0.97665
0.95783 1.01495 1.21724 0.81688 0.98254 0.99619 1.48039 1.14376
1.11524 1.59482 1.20289 0.84934 0.86579 0.77902 1.90742 1.20804
1.77824 1.50649 1.20670 0.97608 0.93180 1.02533 1.20319 0.97873
0.98809 0.94419 1.21452 0.97481 0.95609 0.94216 1.22101 0.96133
0.99412 1.01448 1.22731 0.97771 0.96669 0.89233 1.67671 1.21581
1.17657 1.12446 1.22563 0.89245 0.92475 1.00176 0.93770 0.92584
0.94325 0.92179 0.90093 0.91771 0.91477 0.91856 0.90899 0.90369
0.91430 0.87871 0.87985 0.85012 0.84836 0.82941 0.83123
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -27.27 10.46 55.49 0.58 -26.69 16
2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16
3 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16
4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16
6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16
7 C -0.23 -6.21 9.94 -15.06 -0.15 -6.36 16
8 H 0.08 2.07 7.30 -52.49 -0.38 1.69 16
9 N -0.59 -15.11 3.35 -163.28 -0.55 -15.66 16
10 C 0.17 4.36 5.47 -1.69 -0.01 4.35 16
11 C -0.13 -2.75 5.01 -25.20 -0.13 -2.87 16
12 C 0.12 2.17 3.33 -66.80 -0.22 1.95 16
13 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16
14 C 0.16 3.26 2.58 -68.36 -0.18 3.09 16
15 H 0.02 0.35 8.03 -51.93 -0.42 -0.06 16
16 C -0.12 -1.91 5.45 -27.26 -0.15 -2.06 16
17 C -0.13 -1.50 5.91 -26.43 -0.16 -1.65 16
18 C 0.11 1.15 6.32 -3.44 -0.02 1.13 16
19 N -0.60 -8.73 2.91 -163.99 -0.48 -9.20 16
20 C 0.52 7.52 7.68 -10.98 -0.08 7.43 16
21 O -0.52 -9.83 12.87 5.55 0.07 -9.76 16
22 C -0.10 -0.97 4.27 -29.03 -0.12 -1.09 16
23 C -0.11 -1.26 4.39 -104.48 -0.46 -1.72 16
24 C -0.06 -0.66 9.86 -39.28 -0.39 -1.05 16
25 C -0.17 -1.69 10.11 -39.44 -0.40 -2.09 16
26 C 0.09 0.99 11.18 -17.54 -0.20 0.80 16
27 N -0.49 -6.21 10.36 -13.25 -0.14 -6.35 16
28 C 0.11 1.35 10.86 -17.55 -0.19 1.15 16
29 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16
30 H 0.06 1.55 7.19 -51.93 -0.37 1.18 16
31 H 0.04 1.08 7.81 -51.93 -0.41 0.67 16
32 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
33 H 0.08 1.81 6.21 -51.93 -0.32 1.49 16
34 H 0.06 1.06 8.12 -51.93 -0.42 0.64 16
35 H 0.07 1.16 7.70 -51.93 -0.40 0.76 16
36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
38 H 0.08 0.56 6.18 -51.93 -0.32 0.24 16
39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16
40 H 0.10 0.74 7.97 -51.93 -0.41 0.32 16
41 H 0.10 0.78 7.71 -51.93 -0.40 0.38 16
42 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16
43 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16
44 H 0.15 1.19 8.06 -52.48 -0.42 0.76 16
45 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16
LS Contribution 354.16 15.07 5.34 5.34
Total: -1.00 -34.15 354.16 -9.94 -44.09
By element:
Atomic # 1 Polarization: 7.33 SS G_CDS: -6.80 Total: 0.53 kcal
Atomic # 6 Polarization: 3.63 SS G_CDS: -2.95 Total: 0.68 kcal
Atomic # 7 Polarization: -57.33 SS G_CDS: -0.58 Total: -57.91 kcal
Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal
Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -34.15 -9.94 -44.09 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049426916.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.879 kcal
(2) G-P(sol) polarization free energy of solvation -34.147 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.732 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.941 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) 38.791 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds