Wall clock time and date at job start Tue Mar 31 2020 10:43:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31623 * 1
3 3 Si 1.86792 * 120.00237 * 2 1
4 4 H 1.48505 * 109.47216 * 180.02562 * 3 2 1
5 5 H 1.48492 * 109.47283 * 300.00125 * 3 2 1
6 6 H 1.48498 * 109.47232 * 60.00372 * 3 2 1
7 7 C 1.38817 * 119.99649 * 180.02562 * 2 1 3
8 8 H 1.07995 * 120.00011 * 180.02562 * 7 2 1
9 9 N 1.36939 * 119.99785 * 359.97438 * 7 2 1
10 10 C 1.48383 * 126.56522 * 0.03139 * 9 7 2
11 11 C 1.55467 * 106.97605 * 174.47583 * 10 9 7
12 12 C 1.53433 * 101.67578 * 337.40214 * 11 10 9
13 13 H 1.08998 * 111.14785 * 281.18199 * 12 11 10
14 14 C 1.45032 * 126.55804 * 180.02562 * 9 7 2
15 15 H 1.09006 * 108.69918 * 95.89862 * 14 9 7
16 16 C 1.51074 * 119.19167 * 331.22498 * 14 9 7
17 17 C 1.53852 * 107.29452 * 176.07167 * 16 14 9
18 18 C 1.52718 * 111.53507 * 57.00246 * 17 16 14
19 19 N 1.45721 * 116.37308 * 152.71219 * 12 11 10
20 20 C 1.34779 * 122.22914 * 9.88460 * 19 12 11
21 21 O 1.21284 * 119.99900 * 0.02562 * 20 19 12
22 22 C 1.50701 * 120.00117 * 180.02562 * 20 19 12
23 23 C 1.50701 * 109.47117 * 179.97438 * 22 20 19
24 24 C 1.38677 * 120.41750 * 269.72214 * 23 22 20
25 25 C 1.38627 * 118.41796 * 179.77875 * 24 23 22
26 26 C 1.38228 * 119.16228 * 0.47228 * 25 24 23
27 27 N 1.31856 * 120.76188 * 359.76928 * 26 25 24
28 28 C 1.31883 * 121.72525 * 359.97438 * 27 26 25
29 29 H 0.96994 * 119.99439 * 359.97438 * 1 2 3
30 30 H 1.09000 * 109.96031 * 55.09611 * 10 9 7
31 31 H 1.08994 * 109.95926 * 293.85874 * 10 9 7
32 32 H 1.09006 * 110.98924 * 219.30523 * 11 10 9
33 33 H 1.09004 * 110.98442 * 95.49659 * 11 10 9
34 34 H 1.09005 * 109.88427 * 295.54982 * 16 14 9
35 35 H 1.08996 * 109.88602 * 56.56198 * 16 14 9
36 36 H 1.09001 * 109.10608 * 296.44461 * 17 16 14
37 37 H 1.09003 * 109.01813 * 177.50247 * 17 16 14
38 38 H 1.09002 * 109.15976 * 191.00892 * 18 17 16
39 39 H 1.09003 * 109.16219 * 71.77231 * 18 17 16
40 40 H 1.08998 * 109.46977 * 299.99751 * 22 20 19
41 41 H 1.09000 * 109.47098 * 59.99629 * 22 20 19
42 42 H 1.07997 * 120.78924 * 0.02562 * 24 23 22
43 43 H 1.07999 * 120.41949 * 180.21608 * 25 24 23
44 44 H 1.08004 * 119.61821 * 179.78598 * 26 25 24
45 45 H 1.08001 * 119.61505 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 3.7103 1.3462 -0.0006
5 1 1.8916 2.3963 -1.2124
6 1 1.8916 2.3963 1.2125
7 6 2.0102 -1.2022 -0.0005
8 1 3.0902 -1.2023 -0.0001
9 7 1.3254 -2.3881 -0.0005
10 6 -0.1487 -2.5576 -0.0007
11 6 -0.4305 -4.0798 -0.1437
12 6 0.8710 -4.5776 -0.7859
13 1 0.8888 -4.3645 -1.8547
14 6 1.9023 -3.7188 -0.0005
15 1 1.9439 -4.0816 1.0265
16 6 3.2560 -3.9350 -0.6354
17 6 3.6443 -5.4043 -0.3953
18 6 2.5919 -6.3605 -0.9524
19 7 1.2341 -5.9639 -0.5219
20 6 0.3887 -6.8272 0.0752
21 8 -0.7166 -6.4586 0.4119
22 6 0.8168 -8.2504 0.3245
23 6 -0.3024 -9.0008 0.9994
24 6 -0.3886 -9.0379 2.3830
25 6 -1.4378 -9.7365 2.9601
26 6 -2.3510 -10.3764 2.1432
27 7 -2.2348 -10.3238 0.8309
28 6 -1.2527 -9.6647 0.2475
29 1 -0.4849 0.8400 0.0004
30 1 -0.5852 -2.0178 -0.8410
31 1 -0.5657 -2.1884 0.9362
32 1 -1.2828 -4.2591 -0.7993
33 1 -0.5861 -4.5413 0.8314
34 1 3.1996 -3.7359 -1.7056
35 1 3.9914 -3.2759 -0.1741
36 1 3.7491 -5.5751 0.6761
37 1 4.5993 -5.6033 -0.8816
38 1 2.8001 -7.3691 -0.5954
39 1 2.6393 -6.3497 -2.0414
40 1 1.0553 -8.7297 -0.6249
41 1 1.6976 -8.2577 0.9666
42 1 0.3419 -8.5314 2.9962
43 1 -1.5381 -9.7836 4.0344
44 1 -3.1693 -10.9257 2.5851
45 1 -1.1900 -9.6444 -0.8305
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049426916.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:43:06
Heat of formation + Delta-G solvation = 16.839167 kcal
Electronic energy + Delta-G solvation = -26825.563529 eV
Core-core repulsion = 23228.978240 eV
Total energy + Delta-G solvation = -3596.585289 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-41.79420 -40.91328 -39.16618 -36.90276 -34.70768 -34.08737 -33.79890 -32.78746
-30.98550 -29.75622 -28.81085 -26.39773 -25.78058 -24.47558 -23.50984 -22.81601
-22.24039 -21.41461 -19.96549 -18.62685 -17.97709 -17.42929 -17.34657 -17.19588
-16.80692 -16.30839 -15.94868 -15.75419 -15.36078 -15.16473 -14.99616 -14.59458
-14.34205 -14.14614 -14.11959 -13.92146 -13.77183 -13.38138 -13.14499 -13.04696
-12.88278 -12.75562 -12.42969 -12.23376 -12.05778 -11.93450 -11.75068 -11.70187
-11.55617 -11.39590 -10.81264 -10.73256 -10.39628 -10.35102 -9.83293 -9.51138
-8.92080 -7.85382 -5.22473 0.18919 0.39629 1.44828 1.46360 1.56527
1.71195 2.02960 2.49584 2.90898 3.33544 3.38101 3.53059 3.68353
3.78543 3.93765 3.98072 4.03611 4.11682 4.12218 4.14888 4.15897
4.28669 4.37327 4.51082 4.56810 4.59001 4.60212 4.72473 4.77704
4.84404 4.92792 4.94570 5.05399 5.12158 5.19194 5.21966 5.30542
5.34839 5.45941 5.48721 5.58332 5.63026 5.72407 5.82533 6.16950
6.58971 7.03975 7.06244 7.28966 7.74573 8.44791 9.26655
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.022688 B = 0.003300 C = 0.003045
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1233.849285 B = 8483.299724 C = 9193.407185
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.956 5.956
2 C -0.072 4.072
3 Si 0.980 3.020
4 H -0.260 1.260
5 H -0.293 1.293
6 H -0.296 1.296
7 C -0.231 4.231
8 H 0.090 0.910
9 N -0.613 5.613
10 C 0.182 3.818
11 C -0.111 4.111
12 C 0.133 3.867
13 H 0.077 0.923
14 C 0.153 3.847
15 H 0.000 1.000
16 C -0.113 4.113
17 C -0.121 4.121
18 C 0.103 3.897
19 N -0.601 5.601
20 C 0.510 3.490
21 O -0.576 6.576
22 C -0.085 4.085
23 C -0.122 4.122
24 C -0.075 4.075
25 C -0.173 4.173
26 C 0.079 3.921
27 N -0.515 5.515
28 C 0.094 3.906
29 H 0.245 0.755
30 H 0.023 0.977
31 H -0.004 1.004
32 H 0.058 0.942
33 H 0.070 0.930
34 H 0.062 0.938
35 H 0.054 0.946
36 H 0.065 0.935
37 H 0.111 0.889
38 H 0.126 0.874
39 H 0.086 0.914
40 H 0.139 0.861
41 H 0.134 0.866
42 H 0.147 0.853
43 H 0.159 0.841
44 H 0.175 0.825
45 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.438 -23.346 0.568 24.509
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.605 5.605
2 C -0.264 4.264
3 Si 0.808 3.192
4 H -0.184 1.184
5 H -0.220 1.220
6 H -0.224 1.224
7 C -0.360 4.360
8 H 0.108 0.892
9 N -0.338 5.338
10 C 0.057 3.943
11 C -0.149 4.149
12 C 0.028 3.972
13 H 0.095 0.905
14 C 0.045 3.955
15 H 0.017 0.983
16 C -0.152 4.152
17 C -0.159 4.159
18 C -0.017 4.017
19 N -0.334 5.334
20 C 0.300 3.700
21 O -0.455 6.455
22 C -0.125 4.125
23 C -0.125 4.125
24 C -0.101 4.101
25 C -0.193 4.193
26 C -0.077 4.077
27 N -0.224 5.224
28 C -0.062 4.062
29 H 0.055 0.945
30 H 0.042 0.958
31 H 0.015 0.985
32 H 0.077 0.923
33 H 0.088 0.912
34 H 0.081 0.919
35 H 0.072 0.928
36 H 0.083 0.917
37 H 0.129 0.871
38 H 0.144 0.856
39 H 0.104 0.896
40 H 0.157 0.843
41 H 0.152 0.848
42 H 0.164 0.836
43 H 0.177 0.823
44 H 0.192 0.808
45 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 6.221 -23.404 0.237 24.218
hybrid contribution 0.205 2.228 0.703 2.345
sum 6.426 -21.176 0.940 22.149
Atomic orbital electron populations
1.70201 1.06588 1.25160 1.58575 1.25724 0.96539 1.01285 1.02884
0.84985 0.78402 0.79312 0.76510 1.18379 1.21989 1.22355 1.19463
0.91041 0.83135 1.42313 0.89189 1.44370 1.01959 1.01095 1.86345
1.21430 0.84085 0.91336 0.97466 1.22654 0.96430 0.94687 1.01158
1.21936 0.95740 0.81357 0.98204 0.90484 1.20944 0.94397 0.84757
0.95370 0.98286 1.21431 0.95346 0.97939 1.00458 1.21889 0.99707
0.91986 1.02324 1.22129 0.78569 1.00102 1.00928 1.48139 1.16348
1.09407 1.59481 1.21193 0.84099 0.88270 0.76447 1.90725 1.23166
1.79053 1.52572 1.20702 0.97826 0.89089 1.04893 1.20512 0.98321
0.98866 0.94770 1.21808 0.98107 0.95687 0.94528 1.22432 0.95507
0.98530 1.02799 1.23193 0.98670 0.96942 0.88909 1.67661 1.22426
1.18715 1.13624 1.22856 0.89498 0.92904 1.00986 0.94545 0.95839
0.98533 0.92328 0.91182 0.91941 0.92768 0.91656 0.87100 0.85623
0.89612 0.84302 0.84817 0.83558 0.82311 0.80798 0.82100
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.96 -59.73 10.46 21.65 0.23 -59.50 16
2 C -0.07 -4.17 5.49 84.86 0.47 -3.71 16
3 Si 0.98 46.29 29.55 68.60 2.03 48.31 16
4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16
5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16
6 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16
7 C -0.23 -12.95 9.94 84.03 0.84 -12.11 16
8 H 0.09 4.72 7.30 -2.91 -0.02 4.70 16
9 N -0.61 -32.38 3.35 -670.50 -2.25 -34.62 16
10 C 0.18 9.88 5.47 86.87 0.48 10.35 16
11 C -0.11 -4.93 5.01 31.59 0.16 -4.77 16
12 C 0.13 4.90 3.33 46.14 0.15 5.06 16
13 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16
14 C 0.15 6.25 2.58 45.50 0.12 6.37 16
15 H 0.00 -0.01 8.03 -2.38 -0.02 -0.03 16
16 C -0.11 -3.49 5.45 30.25 0.16 -3.33 16
17 C -0.12 -2.23 5.91 30.79 0.18 -2.04 16
18 C 0.10 1.61 6.32 86.03 0.54 2.15 16
19 N -0.60 -15.81 2.91 -791.13 -2.30 -18.11 16
20 C 0.51 13.65 7.68 87.66 0.67 14.32 16
21 O -0.58 -21.45 12.87 -3.04 -0.04 -21.49 16
22 C -0.09 -1.30 4.27 29.10 0.12 -1.18 16
23 C -0.12 -2.47 4.39 -19.77 -0.09 -2.56 16
24 C -0.08 -1.46 9.86 22.47 0.22 -1.24 16
25 C -0.17 -3.12 10.11 22.36 0.23 -2.89 16
26 C 0.08 1.61 11.18 84.69 0.95 2.55 16
27 N -0.52 -12.82 10.36 -195.84 -2.03 -14.85 16
28 C 0.09 2.12 10.86 84.67 0.92 3.04 16
29 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16
30 H 0.02 1.40 7.19 -2.39 -0.02 1.38 16
31 H 0.00 -0.22 7.81 -2.39 -0.02 -0.24 16
32 H 0.06 2.57 8.14 -2.38 -0.02 2.56 16
33 H 0.07 3.29 6.21 -2.39 -0.01 3.27 16
34 H 0.06 1.94 8.12 -2.38 -0.02 1.92 16
35 H 0.05 1.79 7.70 -2.39 -0.02 1.77 16
36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
37 H 0.11 1.32 8.14 -2.39 -0.02 1.31 16
38 H 0.13 0.87 6.18 -2.39 -0.01 0.85 16
39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
40 H 0.14 1.17 7.97 -2.39 -0.02 1.15 16
41 H 0.13 1.25 7.71 -2.39 -0.02 1.23 16
42 H 0.15 2.29 8.06 -2.91 -0.02 2.27 16
43 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16
44 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16
45 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16
Total: -1.00 -81.30 354.16 2.74 -78.57
By element:
Atomic # 1 Polarization: 10.68 SS G_CDS: 0.98 Total: 11.66 kcal
Atomic # 6 Polarization: 3.90 SS G_CDS: 6.12 Total: 10.02 kcal
Atomic # 7 Polarization: -120.73 SS G_CDS: -6.35 Total: -127.08 kcal
Atomic # 8 Polarization: -21.45 SS G_CDS: -0.04 Total: -21.49 kcal
Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal
Total: -81.30 2.74 -78.57 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049426916.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 95.406 kcal
(2) G-P(sol) polarization free energy of solvation -81.303 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.103 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.839 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds