Wall clock time and date at job start Tue Mar 31 2020 11:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48505 * 109.46665 * 274.96709 * 3 2 1 5 5 H 1.48500 * 109.47080 * 34.96744 * 3 2 1 6 6 H 1.48497 * 109.47263 * 154.96707 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99713 * 187.36128 * 7 2 1 9 9 N 1.36931 * 119.99907 * 7.36618 * 7 2 1 10 10 C 1.48386 * 126.56258 * 3.75583 * 9 7 2 11 11 C 1.55472 * 106.97567 * 185.56005 * 10 9 7 12 12 C 1.53135 * 101.18701 * 22.84819 * 11 10 9 13 13 H 1.08992 * 111.76194 * 77.64207 * 12 11 10 14 14 C 1.45019 * 126.56122 * 183.80623 * 9 7 2 15 15 H 1.09003 * 108.70101 * 263.45758 * 14 9 7 16 16 C 1.51085 * 119.19857 * 28.73590 * 14 9 7 17 17 C 1.53870 * 107.34598 * 183.26307 * 16 14 9 18 18 C 1.52719 * 111.52446 * 303.06878 * 17 16 14 19 19 N 1.45725 * 115.92430 * 206.28434 * 12 11 10 20 20 C 1.34780 * 122.22215 * 350.49194 * 19 12 11 21 21 O 1.21773 * 120.00255 * 354.76142 * 20 19 12 22 22 C 1.41527 * 119.99751 * 174.75823 * 20 19 12 23 23 C 1.35605 * 119.99908 * 143.20925 * 22 20 19 24 24 C 1.41680 * 120.00060 * 353.27498 * 23 22 20 25 25 C 1.38276 * 126.25893 * 146.53373 * 24 23 22 26 26 C 1.39790 * 107.07735 * 179.90686 * 25 24 23 27 27 C 1.35495 * 107.91076 * 0.35604 * 26 25 24 28 28 N 1.35752 * 108.91031 * 359.78023 * 27 26 25 29 29 H 0.96996 * 125.69334 * 179.97438 * 28 27 26 30 30 H 0.97003 * 120.00084 * 0.02562 * 1 2 3 31 31 H 1.08992 * 109.96411 * 304.94383 * 10 9 7 32 32 H 1.09010 * 109.95565 * 66.15291 * 10 9 7 33 33 H 1.08999 * 110.99040 * 140.69600 * 11 10 9 34 34 H 1.08997 * 110.98799 * 264.47140 * 11 10 9 35 35 H 1.09003 * 109.88000 * 63.80357 * 16 14 9 36 36 H 1.09001 * 109.88119 * 302.72321 * 16 14 9 37 37 H 1.08999 * 109.06567 * 182.54310 * 17 16 14 38 38 H 1.09004 * 109.01224 * 63.56112 * 17 16 14 39 39 H 1.08996 * 109.16277 * 288.13744 * 18 17 16 40 40 H 1.09000 * 109.15963 * 168.94497 * 18 17 16 41 41 H 1.08005 * 119.99935 * 323.48442 * 22 20 19 42 42 H 1.08004 * 120.00246 * 173.28006 * 23 22 20 43 43 H 1.08001 * 126.46319 * 0.03601 * 25 24 23 44 44 H 1.08002 * 126.04155 * 180.13571 * 26 25 24 45 45 H 1.07995 * 125.54532 * 179.81030 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3927 2.1069 -1.3949 5 1 1.5042 2.6201 0.8024 6 1 3.5963 1.4121 0.5924 7 6 2.0103 -1.2022 0.0005 8 1 3.0836 -1.2060 0.1204 9 7 1.3341 -2.3832 -0.1510 10 6 -0.1195 -2.5435 -0.4027 11 6 -0.4230 -4.0676 -0.3554 12 6 0.7510 -4.5784 0.4848 13 1 0.6048 -4.3795 1.5464 14 6 1.9012 -3.7167 -0.0951 15 1 2.1038 -4.0532 -1.1119 16 6 3.1294 -3.9605 0.7504 17 6 3.5418 -5.4290 0.5477 18 6 2.4041 -6.3844 0.9012 19 7 1.1396 -5.9648 0.2602 20 6 0.3983 -6.8069 -0.4868 21 8 -0.6806 -6.4464 -0.9213 22 6 0.8741 -8.1102 -0.7663 23 6 0.0080 -9.1525 -0.8130 24 6 -1.3468 -8.9650 -0.4433 25 6 -2.4404 -9.6118 -0.9889 26 6 -3.5744 -9.1276 -0.3303 27 6 -3.1677 -8.2095 0.5794 28 7 -1.8158 -8.1011 0.5209 29 1 -1.2710 -7.5130 1.0669 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6900 -2.0264 0.3687 32 1 -0.3734 -2.1434 -1.3844 33 1 -1.3731 -4.2612 0.1425 34 1 -0.4142 -4.4987 -1.3565 35 1 2.8978 -3.7820 1.8005 36 1 3.9364 -3.3013 0.4306 37 1 4.4010 -5.6482 1.1816 38 1 3.8215 -5.5785 -0.4952 39 1 2.2700 -6.3965 1.9828 40 1 2.6613 -7.3879 0.5622 41 1 1.9275 -8.2752 -0.9380 42 1 0.3509 -10.1258 -1.1319 43 1 -2.4219 -10.3529 -1.7743 44 1 -4.5946 -9.4292 -0.5163 45 1 -3.8138 -7.6545 1.2434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049440959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:06 Heat of formation + Delta-G solvation = 80.919091 kcal Electronic energy + Delta-G solvation = -27315.216660 eV Core-core repulsion = 23721.410085 eV Total energy + Delta-G solvation = -3593.806575 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26654 -40.18140 -37.93406 -35.44292 -33.86043 -32.62716 -32.13831 -30.87300 -29.23378 -28.35870 -27.98201 -25.10836 -24.49428 -22.98032 -21.52732 -20.93523 -20.32407 -20.25971 -19.58620 -19.00233 -17.31079 -16.64203 -16.05404 -15.57887 -15.32002 -14.73845 -14.37406 -14.16641 -14.09187 -13.91153 -13.79978 -13.52908 -13.31298 -12.82665 -12.73044 -12.41322 -12.29104 -12.19172 -11.99025 -11.82417 -11.59547 -11.14720 -10.85985 -10.72881 -10.55299 -10.48030 -10.11601 -10.03558 -10.01295 -9.82817 -9.64669 -9.05190 -8.80731 -8.63937 -8.22659 -7.60636 -6.84027 -5.69446 -3.06764 0.85659 2.55036 3.02606 3.22195 3.30592 3.39372 3.44350 3.46493 3.52402 4.48369 4.69774 4.78882 4.95648 5.06088 5.20794 5.25626 5.33544 5.34967 5.42931 5.43608 5.56059 5.58037 5.64278 5.74440 5.83751 5.93052 5.95534 5.98647 6.08729 6.24409 6.26572 6.31599 6.34920 6.37400 6.54144 6.70495 6.77859 6.86396 7.00181 7.15330 7.16139 7.51552 7.60550 7.64548 7.70356 7.83118 8.25137 8.41048 9.17296 9.82016 10.49917 11.39680 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021171 B = 0.003758 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.241932 B = 7448.252995 C = 8453.933378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.164 3.836 11 C -0.122 4.122 12 C 0.115 3.885 13 H 0.078 0.922 14 C 0.159 3.841 15 H 0.017 0.983 16 C -0.115 4.115 17 C -0.130 4.130 18 C 0.111 3.889 19 N -0.600 5.600 20 C 0.537 3.463 21 O -0.523 6.523 22 C -0.231 4.231 23 C 0.002 3.998 24 C 0.019 3.981 25 C -0.160 4.160 26 C -0.211 4.211 27 C 0.013 3.987 28 N -0.522 5.522 29 H 0.413 0.587 30 H 0.252 0.748 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.135 0.865 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 -20.349 2.858 20.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.039 3.961 11 C -0.161 4.161 12 C 0.011 3.989 13 H 0.096 0.904 14 C 0.049 3.951 15 H 0.034 0.966 16 C -0.154 4.154 17 C -0.169 4.169 18 C -0.012 4.012 19 N -0.334 5.334 20 C 0.328 3.672 21 O -0.402 6.402 22 C -0.253 4.253 23 C -0.018 4.018 24 C -0.093 4.093 25 C -0.185 4.185 26 C -0.236 4.236 27 C -0.123 4.123 28 N -0.114 5.114 29 H 0.250 0.750 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.153 0.847 42 H 0.160 0.840 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.945 -19.801 2.726 20.010 hybrid contribution 0.898 1.312 0.162 1.598 sum 1.843 -18.489 2.888 18.804 Atomic orbital electron populations 1.69940 1.04935 1.25022 1.56557 1.24805 0.95620 0.97668 1.02241 0.86134 0.78611 0.83711 0.77510 1.21664 1.21769 1.20646 1.18997 0.90830 0.82486 1.43254 0.90378 1.44116 1.04428 0.99354 1.83689 1.21859 0.84519 0.89254 1.00451 1.22793 0.95623 0.97621 1.00061 1.22310 0.98542 0.78757 0.99288 0.90437 1.20687 0.91567 0.87105 0.95703 0.96569 1.21423 0.99108 0.94139 1.00692 1.21909 0.97143 0.95770 1.02077 1.21709 0.83850 0.98214 0.97431 1.48203 1.22881 1.12026 1.50241 1.17218 0.84820 0.85829 0.79290 1.90944 1.20853 1.76996 1.51378 1.22182 1.00943 0.93291 1.08888 1.20659 0.89505 0.98549 0.93078 1.18097 0.93860 0.98776 0.98558 1.21248 0.91348 1.03420 1.02508 1.20715 0.98743 1.02937 1.01169 1.21908 0.83525 1.02918 1.03929 1.42171 1.07384 1.31695 1.30179 0.74953 0.93744 0.91247 0.95284 0.92221 0.90435 0.91789 0.91489 0.90939 0.91827 0.91649 0.90223 0.84725 0.84034 0.84617 0.84836 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.15 10.54 55.49 0.58 -26.56 16 2 C -0.01 -0.19 5.46 -17.43 -0.10 -0.28 16 3 Si 0.91 22.11 29.56 -169.99 -5.02 17.08 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.23 -6.27 9.92 -15.06 -0.15 -6.42 16 8 H 0.08 2.07 7.38 -52.49 -0.39 1.68 16 9 N -0.59 -15.12 3.34 -163.60 -0.55 -15.67 16 10 C 0.16 4.14 5.57 -1.69 -0.01 4.13 16 11 C -0.12 -2.58 4.89 -25.35 -0.12 -2.71 16 12 C 0.12 2.14 3.27 -67.23 -0.22 1.92 16 13 H 0.08 1.47 8.13 -51.93 -0.42 1.05 16 14 C 0.16 3.28 2.59 -68.64 -0.18 3.10 16 15 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 16 C -0.12 -1.93 5.46 -27.24 -0.15 -2.08 16 17 C -0.13 -1.58 5.93 -26.42 -0.16 -1.74 16 18 C 0.11 1.24 6.31 -3.45 -0.02 1.22 16 19 N -0.60 -8.89 2.92 -167.90 -0.49 -9.38 16 20 C 0.54 8.13 5.47 -15.00 -0.08 8.05 16 21 O -0.52 -9.71 10.98 5.12 0.06 -9.65 16 22 C -0.23 -2.65 8.59 -39.27 -0.34 -2.99 16 23 C 0.00 0.03 9.94 -39.21 -0.39 -0.36 16 24 C 0.02 0.24 5.51 -83.90 -0.46 -0.22 16 25 C -0.16 -1.98 10.86 -38.99 -0.42 -2.41 16 26 C -0.21 -2.58 10.81 -39.98 -0.43 -3.01 16 27 C 0.01 0.16 11.90 -16.80 -0.20 -0.04 16 28 N -0.52 -6.85 4.41 -10.57 -0.05 -6.90 16 29 H 0.41 5.39 7.27 -40.82 -0.30 5.10 16 30 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.07 1.92 6.78 -51.93 -0.35 1.57 16 32 H 0.03 0.81 8.10 -51.92 -0.42 0.39 16 33 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 34 H 0.08 1.74 6.40 -51.93 -0.33 1.41 16 35 H 0.06 1.09 8.12 -51.93 -0.42 0.67 16 36 H 0.07 1.18 7.74 -51.93 -0.40 0.78 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 41 H 0.14 1.19 6.99 -52.48 -0.37 0.82 16 42 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 43 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 44 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -32.98 349.51 -10.27 -43.25 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.64 Total: 6.41 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -3.43 Total: -3.85 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.50 Total: -58.51 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.06 Total: -9.65 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.98 -10.27 -43.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049440959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.173 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds