Wall clock time and date at job start Tue Mar 31 2020 11:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 120.00121 * 2 1 4 4 H 1.48505 * 109.46665 * 274.96709 * 3 2 1 5 5 H 1.48500 * 109.47080 * 34.96744 * 3 2 1 6 6 H 1.48497 * 109.47263 * 154.96707 * 3 2 1 7 7 C 1.38817 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99713 * 187.36128 * 7 2 1 9 9 N 1.36931 * 119.99907 * 7.36618 * 7 2 1 10 10 C 1.48386 * 126.56258 * 3.75583 * 9 7 2 11 11 C 1.55472 * 106.97567 * 185.56005 * 10 9 7 12 12 C 1.53135 * 101.18701 * 22.84819 * 11 10 9 13 13 H 1.08992 * 111.76194 * 77.64207 * 12 11 10 14 14 C 1.45019 * 126.56122 * 183.80623 * 9 7 2 15 15 H 1.09003 * 108.70101 * 263.45758 * 14 9 7 16 16 C 1.51085 * 119.19857 * 28.73590 * 14 9 7 17 17 C 1.53870 * 107.34598 * 183.26307 * 16 14 9 18 18 C 1.52719 * 111.52446 * 303.06878 * 17 16 14 19 19 N 1.45725 * 115.92430 * 206.28434 * 12 11 10 20 20 C 1.34780 * 122.22215 * 350.49194 * 19 12 11 21 21 O 1.21773 * 120.00255 * 354.76142 * 20 19 12 22 22 C 1.41527 * 119.99751 * 174.75823 * 20 19 12 23 23 C 1.35605 * 119.99908 * 143.20925 * 22 20 19 24 24 C 1.41680 * 120.00060 * 353.27498 * 23 22 20 25 25 C 1.38276 * 126.25893 * 146.53373 * 24 23 22 26 26 C 1.39790 * 107.07735 * 179.90686 * 25 24 23 27 27 C 1.35495 * 107.91076 * 0.35604 * 26 25 24 28 28 N 1.35752 * 108.91031 * 359.78023 * 27 26 25 29 29 H 0.96996 * 125.69334 * 179.97438 * 28 27 26 30 30 H 0.97003 * 120.00084 * 0.02562 * 1 2 3 31 31 H 1.08992 * 109.96411 * 304.94383 * 10 9 7 32 32 H 1.09010 * 109.95565 * 66.15291 * 10 9 7 33 33 H 1.08999 * 110.99040 * 140.69600 * 11 10 9 34 34 H 1.08997 * 110.98799 * 264.47140 * 11 10 9 35 35 H 1.09003 * 109.88000 * 63.80357 * 16 14 9 36 36 H 1.09001 * 109.88119 * 302.72321 * 16 14 9 37 37 H 1.08999 * 109.06567 * 182.54310 * 17 16 14 38 38 H 1.09004 * 109.01224 * 63.56112 * 17 16 14 39 39 H 1.08996 * 109.16277 * 288.13744 * 18 17 16 40 40 H 1.09000 * 109.15963 * 168.94497 * 18 17 16 41 41 H 1.08005 * 119.99935 * 323.48442 * 22 20 19 42 42 H 1.08004 * 120.00246 * 173.28006 * 23 22 20 43 43 H 1.08001 * 126.46319 * 0.03601 * 25 24 23 44 44 H 1.08002 * 126.04155 * 180.13571 * 26 25 24 45 45 H 1.07995 * 125.54532 * 179.81030 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3927 2.1069 -1.3949 5 1 1.5042 2.6201 0.8024 6 1 3.5963 1.4121 0.5924 7 6 2.0103 -1.2022 0.0005 8 1 3.0836 -1.2060 0.1204 9 7 1.3341 -2.3832 -0.1510 10 6 -0.1195 -2.5435 -0.4027 11 6 -0.4230 -4.0676 -0.3554 12 6 0.7510 -4.5784 0.4848 13 1 0.6048 -4.3795 1.5464 14 6 1.9012 -3.7167 -0.0951 15 1 2.1038 -4.0532 -1.1119 16 6 3.1294 -3.9605 0.7504 17 6 3.5418 -5.4290 0.5477 18 6 2.4041 -6.3844 0.9012 19 7 1.1396 -5.9648 0.2602 20 6 0.3983 -6.8069 -0.4868 21 8 -0.6806 -6.4464 -0.9213 22 6 0.8741 -8.1102 -0.7663 23 6 0.0080 -9.1525 -0.8130 24 6 -1.3468 -8.9650 -0.4433 25 6 -2.4404 -9.6118 -0.9889 26 6 -3.5744 -9.1276 -0.3303 27 6 -3.1677 -8.2095 0.5794 28 7 -1.8158 -8.1011 0.5209 29 1 -1.2710 -7.5130 1.0669 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6900 -2.0264 0.3687 32 1 -0.3734 -2.1434 -1.3844 33 1 -1.3731 -4.2612 0.1425 34 1 -0.4142 -4.4987 -1.3565 35 1 2.8978 -3.7820 1.8005 36 1 3.9364 -3.3013 0.4306 37 1 4.4010 -5.6482 1.1816 38 1 3.8215 -5.5785 -0.4952 39 1 2.2700 -6.3965 1.9828 40 1 2.6613 -7.3879 0.5622 41 1 1.9275 -8.2752 -0.9380 42 1 0.3509 -10.1258 -1.1319 43 1 -2.4219 -10.3529 -1.7743 44 1 -4.5946 -9.4292 -0.5163 45 1 -3.8138 -7.6545 1.2434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049440959.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:06 Heat of formation + Delta-G solvation = 60.782942 kcal Electronic energy + Delta-G solvation = -27316.089829 eV Core-core repulsion = 23721.410085 eV Total energy + Delta-G solvation = -3594.679744 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.28515 -41.40244 -39.34289 -36.91917 -34.91604 -34.12001 -33.82159 -31.79669 -30.99724 -29.78855 -29.09378 -26.56306 -26.19871 -24.16658 -22.85028 -22.35316 -21.63683 -21.22188 -21.05520 -20.07701 -18.78583 -18.02636 -17.35762 -17.04341 -16.59066 -16.39953 -15.84139 -15.45984 -15.29764 -15.12975 -14.97228 -14.80774 -14.36856 -14.28386 -14.06400 -13.77611 -13.57353 -13.39196 -13.16326 -13.07135 -12.92634 -12.85996 -12.74154 -12.22445 -12.09854 -11.96438 -11.79998 -11.73052 -11.60754 -11.45608 -10.91520 -10.79197 -10.38210 -9.75876 -9.50141 -8.94020 -8.51871 -7.84921 -5.25114 -0.02052 1.43436 1.46017 1.54656 1.57424 2.04178 2.07902 2.36921 2.48126 2.60069 3.30655 3.37158 3.70713 3.92661 3.97717 4.07788 4.09989 4.16306 4.25272 4.32565 4.36614 4.52970 4.55541 4.57322 4.59108 4.66101 4.72633 4.83754 4.89566 5.00241 5.03769 5.12466 5.14744 5.19396 5.26638 5.39171 5.43545 5.44910 5.48188 5.54657 5.64635 5.71083 6.10262 6.16347 6.25821 6.56173 6.67784 7.01655 7.25931 7.72570 8.42372 9.23844 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021171 B = 0.003758 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.241932 B = 7448.252995 C = 8453.933378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.068 4.068 3 Si 0.978 3.022 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.262 1.262 7 C -0.235 4.235 8 H 0.088 0.912 9 N -0.611 5.611 10 C 0.173 3.827 11 C -0.101 4.101 12 C 0.135 3.865 13 H 0.076 0.924 14 C 0.152 3.848 15 H -0.002 1.002 16 C -0.111 4.111 17 C -0.120 4.120 18 C 0.105 3.895 19 N -0.600 5.600 20 C 0.534 3.466 21 O -0.567 6.567 22 C -0.241 4.241 23 C 0.017 3.983 24 C -0.001 4.001 25 C -0.174 4.174 26 C -0.224 4.224 27 C -0.006 4.006 28 N -0.529 5.529 29 H 0.410 0.590 30 H 0.246 0.754 31 H 0.039 0.961 32 H -0.012 1.012 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.054 0.946 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.171 0.829 42 H 0.184 0.816 43 H 0.156 0.844 44 H 0.149 0.851 45 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.989 -23.225 3.500 23.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.806 3.194 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.363 4.363 8 H 0.106 0.894 9 N -0.336 5.336 10 C 0.047 3.953 11 C -0.139 4.139 12 C 0.029 3.971 13 H 0.094 0.906 14 C 0.044 3.956 15 H 0.016 0.984 16 C -0.150 4.150 17 C -0.159 4.159 18 C -0.016 4.016 19 N -0.332 5.332 20 C 0.327 3.673 21 O -0.449 6.449 22 C -0.262 4.262 23 C -0.003 4.003 24 C -0.113 4.113 25 C -0.198 4.198 26 C -0.248 4.248 27 C -0.141 4.141 28 N -0.121 5.121 29 H 0.247 0.753 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.006 0.994 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.138 0.862 41 H 0.188 0.812 42 H 0.201 0.799 43 H 0.173 0.827 44 H 0.167 0.833 45 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 3.509 -22.734 3.382 23.250 hybrid contribution 0.053 2.159 -0.078 2.161 sum 3.562 -20.574 3.304 21.140 Atomic orbital electron populations 1.70170 1.06550 1.25239 1.58157 1.25692 0.96481 1.01189 1.02744 0.85063 0.78064 0.79172 0.77088 1.21912 1.22156 1.18597 1.19415 0.91484 0.83463 1.41960 0.89403 1.44370 1.04571 1.01047 1.83582 1.21578 0.84882 0.91822 0.96999 1.22470 0.97055 0.94399 1.00016 1.21812 0.95862 0.81262 0.98182 0.90629 1.20873 0.94216 0.84839 0.95669 0.98412 1.21410 0.96492 0.97696 0.99400 1.21888 0.98725 0.92137 1.03112 1.22060 0.81448 0.99698 0.98349 1.48254 1.24412 1.10010 1.50558 1.17869 0.84128 0.87063 0.78222 1.90927 1.22925 1.78022 1.52999 1.22212 1.02796 0.91058 1.10134 1.21127 0.88009 1.00120 0.91051 1.18650 0.95307 0.98661 0.98656 1.21631 0.91315 1.03904 1.02990 1.21055 0.99733 1.02939 1.01119 1.22328 0.83778 1.03411 1.04602 1.42268 1.07602 1.31786 1.30482 0.75309 0.94478 0.94296 0.99384 0.92074 0.91768 0.91998 0.92687 0.87176 0.91773 0.89935 0.86214 0.81222 0.79935 0.82658 0.83337 0.80684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.14 10.54 21.65 0.23 -58.91 16 2 C -0.07 -3.96 5.46 84.86 0.46 -3.49 16 3 Si 0.98 46.38 29.56 68.60 2.03 48.41 16 4 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 5 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.23 -13.24 9.92 84.04 0.83 -12.40 16 8 H 0.09 4.67 7.38 -2.91 -0.02 4.65 16 9 N -0.61 -32.45 3.34 -671.51 -2.25 -34.69 16 10 C 0.17 9.33 5.57 86.87 0.48 9.81 16 11 C -0.10 -4.45 4.89 31.49 0.15 -4.30 16 12 C 0.13 4.99 3.27 45.86 0.15 5.14 16 13 H 0.08 2.85 8.13 -2.39 -0.02 2.83 16 14 C 0.15 6.32 2.59 45.32 0.12 6.44 16 15 H 0.00 -0.07 8.06 -2.39 -0.02 -0.09 16 16 C -0.11 -3.57 5.46 30.26 0.17 -3.41 16 17 C -0.12 -2.44 5.93 30.79 0.18 -2.26 16 18 C 0.11 1.90 6.31 86.03 0.54 2.44 16 19 N -0.60 -16.54 2.92 -803.30 -2.35 -18.89 16 20 C 0.53 15.16 5.47 85.05 0.47 15.63 16 21 O -0.57 -20.97 10.98 -4.58 -0.05 -21.02 16 22 C -0.24 -4.60 8.59 22.47 0.19 -4.40 16 23 C 0.02 0.29 9.94 22.51 0.22 0.52 16 24 C 0.00 -0.03 5.51 39.08 0.22 0.19 16 25 C -0.17 -4.01 10.86 22.65 0.25 -3.76 16 26 C -0.22 -5.29 10.81 22.01 0.24 -5.06 16 27 C -0.01 -0.14 11.90 83.45 0.99 0.86 16 28 N -0.53 -13.47 4.41 -187.34 -0.83 -14.30 16 29 H 0.41 10.47 7.27 -92.71 -0.67 9.80 16 30 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 31 H 0.04 2.32 6.78 -2.39 -0.02 2.30 16 32 H -0.01 -0.73 8.10 -2.38 -0.02 -0.75 16 33 H 0.06 2.64 8.12 -2.39 -0.02 2.62 16 34 H 0.06 3.02 6.40 -2.39 -0.02 3.01 16 35 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 36 H 0.05 1.88 7.74 -2.39 -0.02 1.86 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.12 1.30 5.93 -2.39 -0.01 1.28 16 41 H 0.17 2.01 6.99 -2.91 -0.02 1.99 16 42 H 0.18 1.60 8.06 -2.91 -0.02 1.58 16 43 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 44 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 45 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -77.23 349.51 2.77 -74.46 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.32 Total: 23.01 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 5.67 Total: 1.93 kcal Atomic # 7 Polarization: -121.59 SS G_CDS: -5.19 Total: -126.79 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.05 Total: -21.02 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -77.23 2.77 -74.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049440959.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.239 kcal (2) G-P(sol) polarization free energy of solvation -77.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds