Wall clock time and date at job start Tue Mar 31 2020 11:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 120.00013 * 2 1 4 4 H 1.48497 * 109.47016 * 239.99818 * 3 2 1 5 5 H 1.48493 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46947 * 120.00293 * 3 2 1 7 7 C 1.38813 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99732 * 359.72150 * 7 2 1 10 10 C 1.46830 * 125.37244 * 179.97438 * 9 7 2 11 11 C 1.53894 * 107.49787 * 181.00139 * 10 9 7 12 12 H 1.08997 * 109.09149 * 259.49501 * 11 10 9 13 13 C 1.50772 * 110.59724 * 139.42864 * 11 10 9 14 14 C 1.49778 * 114.38233 * 289.67510 * 13 11 10 15 15 C 1.51607 * 111.72433 * 304.41220 * 14 13 11 16 16 N 1.44509 * 112.72683 * 42.27313 * 15 14 13 17 17 C 1.34774 * 116.65411 * 154.44385 * 16 15 14 18 18 O 1.21785 * 120.00131 * 325.20418 * 17 16 15 19 19 C 1.41511 * 119.99931 * 145.20087 * 17 16 15 20 20 C 1.35618 * 120.00340 * 174.37491 * 19 17 16 21 21 C 1.41675 * 119.99783 * 352.31314 * 20 19 17 22 22 C 1.38277 * 126.26058 * 133.31767 * 21 20 19 23 23 C 1.39785 * 107.08034 * 179.97438 * 22 21 20 24 24 C 1.35506 * 107.90949 * 0.02562 * 23 22 21 25 25 N 1.35754 * 108.90731 * 359.76695 * 24 23 22 26 26 H 0.97003 * 125.68641 * 180.23357 * 25 24 23 27 27 C 1.44112 * 126.69096 * 334.42262 * 16 15 14 28 28 H 1.08997 * 109.35692 * 254.43747 * 27 16 15 29 29 C 1.46902 * 125.38059 * 359.69592 * 9 7 2 30 30 H 0.97002 * 119.99517 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.84725 * 300.49171 * 10 9 7 32 32 H 1.09002 * 109.84499 * 61.51593 * 10 9 7 33 33 H 1.09003 * 108.67886 * 50.09063 * 13 11 10 34 34 H 1.08990 * 108.68280 * 168.03098 * 13 11 10 35 35 H 1.09006 * 109.20610 * 183.79729 * 14 13 11 36 36 H 1.09000 * 108.99278 * 64.88514 * 14 13 11 37 37 H 1.08998 * 108.83044 * 281.43299 * 15 14 13 38 38 H 1.09005 * 108.74512 * 163.05260 * 15 14 13 39 39 H 1.08000 * 120.00323 * 354.37100 * 19 17 16 40 40 H 1.07995 * 120.00161 * 172.31609 * 20 19 17 41 41 H 1.08002 * 126.46258 * 359.95283 * 22 21 20 42 42 H 1.08002 * 126.04601 * 179.97438 * 23 22 21 43 43 H 1.08000 * 125.54320 * 179.97438 * 24 23 22 44 44 H 1.09000 * 110.08875 * 281.34586 * 29 9 7 45 45 H 1.09005 * 110.08271 * 42.91507 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 0.0047 10 6 1.9372 -3.7228 0.0042 11 6 0.7959 -4.7549 -0.0144 12 1 0.6460 -5.1389 0.9947 13 6 1.1318 -5.9008 -0.9349 14 6 1.1227 -5.5477 -2.3904 15 6 -0.2034 -4.9473 -2.8139 16 7 -0.7211 -4.0020 -1.8512 17 6 -1.5536 -3.0530 -2.3231 18 8 -1.3810 -2.5904 -3.4364 19 6 -2.6284 -2.5941 -1.5251 20 6 -3.3967 -1.5610 -1.9513 21 6 -3.0286 -0.8361 -3.1116 22 6 -3.8650 -0.4819 -4.1542 23 6 -3.0902 0.2206 -5.0816 24 6 -1.8235 0.2830 -4.6041 25 7 -1.7737 -0.3514 -3.4050 26 1 -0.9851 -0.4485 -2.8486 27 6 -0.4390 -3.9701 -0.4383 28 1 -1.3058 -4.3366 0.1115 29 6 -0.1370 -2.5257 0.0175 30 1 -0.4849 0.8401 0.0004 31 1 2.5603 -3.8441 -0.8819 32 1 2.5401 -3.8539 0.9029 33 1 2.1287 -6.2661 -0.6881 34 1 0.4163 -6.7055 -0.7662 35 1 1.3086 -6.4465 -2.9786 36 1 1.9165 -4.8267 -2.5855 37 1 -0.9284 -5.7509 -2.9428 38 1 -0.0689 -4.4390 -3.7688 39 1 -2.8369 -3.0666 -0.5766 40 1 -4.2890 -1.2909 -1.4062 41 1 -4.9183 -0.7060 -4.2366 42 1 -3.4391 0.6388 -6.0142 43 1 -0.9901 0.7627 -5.0959 44 1 -0.5198 -2.3609 1.0247 45 1 -0.5860 -1.8138 -0.6752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050030873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:12 Heat of formation + Delta-G solvation = 84.366398 kcal Electronic energy + Delta-G solvation = -28322.608123 eV Core-core repulsion = 24728.951034 eV Total energy + Delta-G solvation = -3593.657089 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88136 -40.02660 -37.90908 -35.25898 -33.48115 -33.16896 -32.19726 -30.21939 -29.74665 -27.86042 -27.16751 -25.76666 -24.53818 -22.73112 -22.04511 -20.85379 -19.93998 -19.71644 -18.87659 -17.89054 -17.42721 -16.86405 -16.16035 -15.42675 -15.13347 -14.70133 -14.38547 -14.29025 -14.04609 -13.51862 -13.39824 -13.18975 -12.81336 -12.69799 -12.61745 -12.42735 -12.19863 -11.93106 -11.70269 -11.61803 -11.42467 -11.17674 -11.08586 -10.86745 -10.60301 -10.35989 -10.22042 -10.15380 -9.92062 -9.78305 -9.28076 -9.21951 -8.73839 -8.20329 -7.84353 -7.07900 -6.90909 -5.77821 -3.16100 1.29721 3.10114 3.33478 3.39129 3.39717 3.48998 3.69174 3.84530 4.21642 4.41174 4.88447 4.98686 5.11471 5.24469 5.33527 5.40158 5.43016 5.49910 5.60464 5.75057 5.76060 5.81937 5.89885 5.95869 5.97066 6.01482 6.05313 6.12372 6.22024 6.32034 6.34905 6.45279 6.53064 6.55842 6.62926 6.78325 6.81258 6.87395 7.19456 7.36519 7.54684 7.56659 7.66719 7.77168 7.96470 8.20297 8.32156 8.70207 9.11848 9.72461 10.35957 11.27775 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.007823 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.672461 B = 3578.312901 C = 5633.135394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.009 4.009 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.220 4.220 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.141 3.859 11 C -0.097 4.097 12 H 0.079 0.921 13 C -0.101 4.101 14 C -0.126 4.126 15 C 0.128 3.872 16 N -0.609 5.609 17 C 0.559 3.441 18 O -0.529 6.529 19 C -0.214 4.214 20 C 0.008 3.992 21 C 0.039 3.961 22 C -0.181 4.181 23 C -0.219 4.219 24 C 0.004 3.996 25 N -0.495 5.495 26 H 0.425 0.575 27 C 0.128 3.872 28 H 0.058 0.942 29 C 0.149 3.851 30 H 0.252 0.748 31 H 0.025 0.975 32 H 0.022 0.978 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.153 0.847 44 H 0.026 0.974 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.974 -8.731 -3.265 10.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.204 4.204 3 Si 0.741 3.259 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.212 1.212 7 C -0.348 4.348 8 H 0.094 0.906 9 N -0.325 5.325 10 C 0.015 3.985 11 C -0.117 4.117 12 H 0.097 0.903 13 C -0.139 4.139 14 C -0.164 4.164 15 C 0.005 3.995 16 N -0.344 5.344 17 C 0.353 3.647 18 O -0.407 6.407 19 C -0.237 4.237 20 C -0.012 4.012 21 C -0.075 4.075 22 C -0.206 4.206 23 C -0.243 4.243 24 C -0.133 4.133 25 N -0.086 5.086 26 H 0.265 0.735 27 C 0.023 3.977 28 H 0.076 0.924 29 C 0.023 3.977 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.170 0.830 44 H 0.043 0.957 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.718 -8.331 -3.716 10.270 hybrid contribution 1.014 0.692 0.563 1.351 sum -3.704 -7.639 -3.153 9.056 Atomic orbital electron populations 1.69809 1.04636 1.24937 1.57833 1.24729 0.95790 0.97477 1.02417 0.86214 0.78546 0.83220 0.77930 1.21268 1.21505 1.21202 1.19025 0.90501 0.82401 1.42916 0.90579 1.44222 1.01408 0.99988 1.86877 1.21313 0.93760 0.85536 0.97916 1.21229 0.95832 0.95505 0.99096 0.90296 1.20230 1.01572 0.97412 0.94679 1.20828 0.97978 1.00898 0.96655 1.20472 0.94717 0.91430 0.92883 1.46254 1.48345 1.32018 1.07788 1.17146 0.82142 0.78601 0.86848 1.90839 1.72585 1.53851 1.23451 1.22286 0.98807 1.01134 1.01427 1.20695 0.97553 0.91133 0.91862 1.17927 0.85316 1.06037 0.98181 1.21059 0.98331 1.05402 0.95789 1.20523 0.93477 1.08765 1.01574 1.21762 0.99014 1.03999 0.88562 1.42252 1.10028 1.39611 1.16704 0.73485 1.21268 0.96186 1.00172 0.80071 0.92370 1.22314 0.85524 0.89843 0.99984 0.93699 0.95740 0.95975 0.91921 0.92497 0.91148 0.91386 0.93856 0.90611 0.85298 0.84622 0.85356 0.85625 0.82997 0.95655 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.92 10.17 55.49 0.56 -24.35 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.33 16 3 Si 0.91 21.64 29.55 -169.99 -5.02 16.61 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.22 -5.91 10.25 -15.06 -0.15 -6.07 16 8 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 9 N -0.60 -14.61 3.39 -171.21 -0.58 -15.19 16 10 C 0.14 2.82 6.75 -3.40 -0.02 2.80 16 11 C -0.10 -1.58 3.01 -91.61 -0.28 -1.86 16 12 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.10 -1.34 4.95 -29.44 -0.15 -1.49 16 14 C -0.13 -1.74 5.82 -29.03 -0.17 -1.91 16 15 C 0.13 2.03 6.21 -5.81 -0.04 1.99 16 16 N -0.61 -10.95 3.08 -173.18 -0.53 -11.48 16 17 C 0.56 10.89 5.18 -15.01 -0.08 10.81 16 18 O -0.53 -11.55 11.77 5.11 0.06 -11.49 16 19 C -0.21 -3.73 7.62 -39.27 -0.30 -4.03 16 20 C 0.01 0.13 9.96 -39.21 -0.39 -0.26 16 21 C 0.04 0.74 5.01 -83.91 -0.42 0.32 16 22 C -0.18 -3.11 10.86 -38.99 -0.42 -3.54 16 23 C -0.22 -3.71 10.81 -39.98 -0.43 -4.14 16 24 C 0.00 0.07 11.90 -16.79 -0.20 -0.13 16 25 N -0.49 -9.97 4.02 -10.56 -0.04 -10.01 16 26 H 0.43 9.61 8.18 -40.82 -0.33 9.27 16 27 C 0.13 2.30 2.79 -68.78 -0.19 2.10 16 28 H 0.06 0.94 7.44 -51.93 -0.39 0.55 16 29 C 0.15 3.36 4.65 -3.07 -0.01 3.34 16 30 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.02 0.50 6.71 -51.93 -0.35 0.16 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 1.08 7.10 -51.93 -0.37 0.71 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.08 1.33 7.10 -51.93 -0.37 0.96 16 39 H 0.13 1.98 7.00 -52.49 -0.37 1.61 16 40 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.13 1.87 8.06 -52.49 -0.42 1.44 16 42 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.11 2.57 3.67 -51.93 -0.19 2.38 16 LS Contribution 347.08 15.07 5.23 5.23 Total: -1.00 -30.20 347.08 -10.23 -40.44 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -6.56 Total: 12.62 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -3.35 Total: -2.38 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.59 Total: -61.04 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.06 Total: -11.49 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.20 -10.23 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050030873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.804 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds