Wall clock time and date at job start Tue Mar 31 2020 11:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86794 * 120.00013 * 2 1 4 4 H 1.48497 * 109.47016 * 239.99818 * 3 2 1 5 5 H 1.48493 * 109.47382 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46947 * 120.00293 * 3 2 1 7 7 C 1.38813 * 119.99757 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99730 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99732 * 359.72150 * 7 2 1 10 10 C 1.46830 * 125.37244 * 179.97438 * 9 7 2 11 11 C 1.53894 * 107.49787 * 181.00139 * 10 9 7 12 12 H 1.08997 * 109.09149 * 259.49501 * 11 10 9 13 13 C 1.50772 * 110.59724 * 139.42864 * 11 10 9 14 14 C 1.49778 * 114.38233 * 289.67510 * 13 11 10 15 15 C 1.51607 * 111.72433 * 304.41220 * 14 13 11 16 16 N 1.44509 * 112.72683 * 42.27313 * 15 14 13 17 17 C 1.34774 * 116.65411 * 154.44385 * 16 15 14 18 18 O 1.21785 * 120.00131 * 325.20418 * 17 16 15 19 19 C 1.41511 * 119.99931 * 145.20087 * 17 16 15 20 20 C 1.35618 * 120.00340 * 174.37491 * 19 17 16 21 21 C 1.41675 * 119.99783 * 352.31314 * 20 19 17 22 22 C 1.38277 * 126.26058 * 133.31767 * 21 20 19 23 23 C 1.39785 * 107.08034 * 179.97438 * 22 21 20 24 24 C 1.35506 * 107.90949 * 0.02562 * 23 22 21 25 25 N 1.35754 * 108.90731 * 359.76695 * 24 23 22 26 26 H 0.97003 * 125.68641 * 180.23357 * 25 24 23 27 27 C 1.44112 * 126.69096 * 334.42262 * 16 15 14 28 28 H 1.08997 * 109.35692 * 254.43747 * 27 16 15 29 29 C 1.46902 * 125.38059 * 359.69592 * 9 7 2 30 30 H 0.97002 * 119.99517 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.84725 * 300.49171 * 10 9 7 32 32 H 1.09002 * 109.84499 * 61.51593 * 10 9 7 33 33 H 1.09003 * 108.67886 * 50.09063 * 13 11 10 34 34 H 1.08990 * 108.68280 * 168.03098 * 13 11 10 35 35 H 1.09006 * 109.20610 * 183.79729 * 14 13 11 36 36 H 1.09000 * 108.99278 * 64.88514 * 14 13 11 37 37 H 1.08998 * 108.83044 * 281.43299 * 15 14 13 38 38 H 1.09005 * 108.74512 * 163.05260 * 15 14 13 39 39 H 1.08000 * 120.00323 * 354.37100 * 19 17 16 40 40 H 1.07995 * 120.00161 * 172.31609 * 20 19 17 41 41 H 1.08002 * 126.46258 * 359.95283 * 22 21 20 42 42 H 1.08002 * 126.04601 * 179.97438 * 23 22 21 43 43 H 1.08000 * 125.54320 * 179.97438 * 24 23 22 44 44 H 1.09000 * 110.08875 * 281.34586 * 29 9 7 45 45 H 1.09005 * 110.08271 * 42.91507 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 0.0047 10 6 1.9372 -3.7228 0.0042 11 6 0.7959 -4.7549 -0.0144 12 1 0.6460 -5.1389 0.9947 13 6 1.1318 -5.9008 -0.9349 14 6 1.1227 -5.5477 -2.3904 15 6 -0.2034 -4.9473 -2.8139 16 7 -0.7211 -4.0020 -1.8512 17 6 -1.5536 -3.0530 -2.3231 18 8 -1.3810 -2.5904 -3.4364 19 6 -2.6284 -2.5941 -1.5251 20 6 -3.3967 -1.5610 -1.9513 21 6 -3.0286 -0.8361 -3.1116 22 6 -3.8650 -0.4819 -4.1542 23 6 -3.0902 0.2206 -5.0816 24 6 -1.8235 0.2830 -4.6041 25 7 -1.7737 -0.3514 -3.4050 26 1 -0.9851 -0.4485 -2.8486 27 6 -0.4390 -3.9701 -0.4383 28 1 -1.3058 -4.3366 0.1115 29 6 -0.1370 -2.5257 0.0175 30 1 -0.4849 0.8401 0.0004 31 1 2.5603 -3.8441 -0.8819 32 1 2.5401 -3.8539 0.9029 33 1 2.1287 -6.2661 -0.6881 34 1 0.4163 -6.7055 -0.7662 35 1 1.3086 -6.4465 -2.9786 36 1 1.9165 -4.8267 -2.5855 37 1 -0.9284 -5.7509 -2.9428 38 1 -0.0689 -4.4390 -3.7688 39 1 -2.8369 -3.0666 -0.5766 40 1 -4.2890 -1.2909 -1.4062 41 1 -4.9183 -0.7060 -4.2366 42 1 -3.4391 0.6388 -6.0142 43 1 -0.9901 0.7627 -5.0959 44 1 -0.5198 -2.3609 1.0247 45 1 -0.5860 -1.8138 -0.6752 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050030873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:11 Heat of formation + Delta-G solvation = 67.279650 kcal Electronic energy + Delta-G solvation = -28323.349060 eV Core-core repulsion = 24728.951034 eV Total energy + Delta-G solvation = -3594.398026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28198 -41.41353 -39.37873 -36.83105 -34.88346 -34.56614 -33.88641 -31.62232 -31.40997 -29.22931 -28.71949 -27.37875 -26.07017 -24.14929 -23.40522 -22.48265 -21.38961 -21.06809 -20.25767 -19.31883 -18.98361 -18.47993 -17.63953 -16.86066 -16.80013 -16.24348 -15.81624 -15.76555 -15.57180 -14.88874 -14.81909 -14.53951 -14.22882 -14.03778 -14.00234 -13.93251 -13.74586 -13.56678 -13.11300 -13.01953 -13.01090 -12.77518 -12.70287 -12.53575 -12.20615 -11.99696 -11.77408 -11.52876 -11.43791 -11.29083 -10.78934 -10.72496 -10.55803 -9.60179 -9.26883 -8.82756 -8.45522 -7.80490 -5.20019 -0.05757 1.41140 1.41553 1.47763 1.69505 2.12055 2.34163 2.44995 2.47448 2.78275 3.30476 3.60538 3.66450 3.85066 3.93162 4.01908 4.07701 4.16919 4.20517 4.39345 4.53017 4.57297 4.61277 4.62457 4.69443 4.74932 4.78449 4.87019 4.90731 4.98164 5.14240 5.14981 5.18142 5.25199 5.35717 5.40845 5.44933 5.48136 5.48940 5.55735 5.78035 6.07621 6.23563 6.26092 6.42149 6.54953 6.79167 7.10498 7.27562 7.78226 8.39878 9.20407 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.009598 B = 0.007823 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.672461 B = 3578.312901 C = 5633.135394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.052 4.052 3 Si 0.964 3.036 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.620 5.620 10 C 0.134 3.866 11 C -0.089 4.089 12 H 0.102 0.898 13 C -0.097 4.097 14 C -0.120 4.120 15 C 0.123 3.877 16 N -0.610 5.610 17 C 0.550 3.450 18 O -0.562 6.562 19 C -0.228 4.228 20 C 0.009 3.991 21 C 0.016 3.984 22 C -0.183 4.183 23 C -0.217 4.217 24 C -0.021 4.021 25 N -0.512 5.512 26 H 0.408 0.592 27 C 0.136 3.864 28 H 0.086 0.914 29 C 0.149 3.851 30 H 0.244 0.756 31 H 0.016 0.984 32 H 0.024 0.976 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.148 0.852 40 H 0.171 0.829 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.165 0.835 44 H 0.000 1.000 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 -10.613 -3.139 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.794 3.206 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.346 5.346 10 C 0.009 3.991 11 C -0.108 4.108 12 H 0.120 0.880 13 C -0.135 4.135 14 C -0.158 4.158 15 C 0.001 3.999 16 N -0.344 5.344 17 C 0.345 3.655 18 O -0.443 6.443 19 C -0.250 4.250 20 C -0.011 4.011 21 C -0.097 4.097 22 C -0.208 4.208 23 C -0.242 4.242 24 C -0.157 4.157 25 N -0.102 5.102 26 H 0.245 0.755 27 C 0.031 3.969 28 H 0.104 0.896 29 C 0.024 3.976 30 H 0.054 0.946 31 H 0.034 0.966 32 H 0.042 0.958 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.166 0.834 40 H 0.188 0.812 41 H 0.174 0.826 42 H 0.171 0.829 43 H 0.183 0.817 44 H 0.017 0.983 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.620 -10.253 -3.591 12.231 hybrid contribution 1.327 1.315 0.482 1.929 sum -4.293 -8.939 -3.109 10.392 Atomic orbital electron populations 1.70011 1.05207 1.24630 1.58036 1.25356 0.96662 0.99792 1.02778 0.85375 0.77393 0.80088 0.77782 1.21303 1.21999 1.20683 1.19263 0.90684 0.83964 1.42998 0.91095 1.44490 1.02514 1.00842 1.86739 1.21508 0.95259 0.84893 0.97416 1.21285 0.93008 0.95164 1.01323 0.87990 1.20231 1.03513 0.96642 0.93103 1.20839 0.95591 1.01389 0.97956 1.20635 0.96598 0.91363 0.91316 1.46352 1.47957 1.32021 1.08091 1.17570 0.82684 0.78590 0.86681 1.90818 1.73583 1.54955 1.24942 1.22417 0.98517 1.01975 1.02090 1.21151 0.98426 0.90261 0.91274 1.18457 0.85099 1.06675 0.99493 1.21483 0.99548 1.04641 0.95095 1.20908 0.92832 1.08064 1.02362 1.22239 1.00395 1.04623 0.88466 1.42357 1.09914 1.40702 1.17186 0.75541 1.21136 0.98106 0.97353 0.80261 0.89614 1.22197 0.84481 0.92791 0.98163 0.94573 0.96577 0.95770 0.90156 0.89448 0.87667 0.94330 0.91240 0.93290 0.83410 0.81178 0.82589 0.82923 0.81730 0.98254 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.69 10.17 21.65 0.22 -51.47 16 2 C -0.05 -2.86 5.48 84.86 0.47 -2.39 16 3 Si 0.96 45.56 29.55 68.60 2.03 47.59 16 4 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 6 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 7 C -0.24 -13.23 10.25 84.03 0.86 -12.37 16 8 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 9 N -0.62 -30.77 3.39 -695.57 -2.36 -33.13 16 10 C 0.13 5.33 6.75 86.62 0.58 5.91 16 11 C -0.09 -2.66 3.01 -11.43 -0.03 -2.70 16 12 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 13 C -0.10 -2.21 4.95 28.84 0.14 -2.07 16 14 C -0.12 -3.03 5.82 29.10 0.17 -2.86 16 15 C 0.12 3.74 6.21 86.29 0.54 4.27 16 16 N -0.61 -21.39 3.08 -820.00 -2.53 -23.92 16 17 C 0.55 21.52 5.18 85.05 0.44 21.97 16 18 O -0.56 -25.24 11.77 -4.62 -0.05 -25.30 16 19 C -0.23 -7.83 7.62 22.47 0.17 -7.66 16 20 C 0.01 0.29 9.96 22.51 0.22 0.52 16 21 C 0.02 0.59 5.01 39.08 0.20 0.79 16 22 C -0.18 -6.08 10.86 22.65 0.25 -5.83 16 23 C -0.22 -7.17 10.81 22.01 0.24 -6.93 16 24 C -0.02 -0.78 11.90 83.45 0.99 0.22 16 25 N -0.51 -21.29 4.02 -187.33 -0.75 -22.04 16 26 H 0.41 19.46 8.18 -92.71 -0.76 18.71 16 27 C 0.14 4.68 2.79 45.71 0.13 4.81 16 28 H 0.09 2.52 7.44 -2.39 -0.02 2.50 16 29 C 0.15 6.81 4.65 86.79 0.40 7.21 16 30 H 0.24 13.56 8.31 -92.71 -0.77 12.79 16 31 H 0.02 0.67 6.71 -2.39 -0.02 0.65 16 32 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.08 1.61 8.10 -2.39 -0.02 1.59 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.04 1.19 7.10 -2.39 -0.02 1.18 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.05 1.74 7.10 -2.38 -0.02 1.72 16 39 H 0.15 4.34 7.00 -2.91 -0.02 4.32 16 40 H 0.17 4.19 8.06 -2.91 -0.02 4.16 16 41 H 0.16 4.16 8.06 -2.91 -0.02 4.14 16 42 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.17 5.31 8.06 -2.91 -0.02 5.29 16 44 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 45 H 0.09 4.30 3.67 -2.38 -0.01 4.29 16 Total: -1.00 -68.27 347.08 2.56 -65.71 By element: Atomic # 1 Polarization: 39.46 SS G_CDS: 0.24 Total: 39.70 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: 5.76 Total: 2.87 kcal Atomic # 7 Polarization: -125.15 SS G_CDS: -5.42 Total: -130.57 kcal Atomic # 8 Polarization: -25.24 SS G_CDS: -0.05 Total: -25.30 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -68.27 2.56 -65.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050030873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.985 kcal (2) G-P(sol) polarization free energy of solvation -68.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds