Wall clock time and date at job start Tue Mar 31 2020 10:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99702 * 2 1 4 4 H 1.48502 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47141 * 299.99889 * 3 2 1 6 6 H 1.48495 * 109.47223 * 60.00112 * 3 2 1 7 7 C 1.38803 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00562 * 162.49733 * 7 2 1 9 9 N 1.36938 * 119.99694 * 342.21759 * 7 2 1 10 10 C 1.46884 * 120.46543 * 331.57163 * 9 7 2 11 11 C 1.52862 * 109.01691 * 235.48694 * 10 9 7 12 12 C 1.52670 * 109.17478 * 307.81681 * 11 10 9 13 13 C 1.53487 * 113.62202 * 188.99407 * 12 11 10 14 14 N 1.47671 * 85.98521 * 137.70890 * 13 12 11 15 15 C 1.34771 * 134.45668 * 155.71630 * 14 13 12 16 16 O 1.21288 * 120.00125 * 179.97438 * 15 14 13 17 17 C 1.50704 * 120.00159 * 359.95380 * 15 14 13 18 18 C 1.50699 * 109.47143 * 180.02562 * 17 15 14 19 19 C 1.38667 * 120.42174 * 89.99508 * 18 17 15 20 20 C 1.38627 * 118.42259 * 179.97438 * 19 18 17 21 21 C 1.38232 * 119.16195 * 0.02562 * 20 19 18 22 22 N 1.31855 * 120.75997 * 359.97438 * 21 20 19 23 23 C 1.31887 * 121.72719 * 359.70374 * 22 21 20 24 24 C 1.47666 * 91.08705 * 335.68047 * 14 13 12 25 25 C 1.52670 * 113.18448 * 57.46516 * 12 11 10 26 26 C 1.46880 * 120.46673 * 151.84793 * 9 7 2 27 27 H 0.96999 * 119.99968 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.58970 * 355.31048 * 10 9 7 29 29 H 1.08997 * 109.59051 * 115.74964 * 10 9 7 30 30 H 1.09007 * 109.60898 * 187.83981 * 11 10 9 31 31 H 1.09004 * 109.38926 * 67.65814 * 11 10 9 32 32 H 1.09000 * 113.78914 * 251.97481 * 13 12 11 33 33 H 1.09000 * 113.78871 * 23.44336 * 13 12 11 34 34 H 1.09000 * 109.46993 * 299.99531 * 17 15 14 35 35 H 1.08998 * 109.46744 * 59.99857 * 17 15 14 36 36 H 1.08004 * 120.79160 * 359.97438 * 19 18 17 37 37 H 1.07994 * 120.42355 * 180.02562 * 20 19 18 38 38 H 1.07993 * 119.61955 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.61640 * 180.31117 * 23 22 21 40 40 H 1.09000 * 113.79346 * 270.04744 * 24 14 13 41 41 H 1.09001 * 113.79382 * 138.57631 * 24 14 13 42 42 H 1.09004 * 109.53457 * 182.52043 * 25 12 11 43 43 H 1.09000 * 109.53307 * 62.29763 * 25 12 11 44 44 H 1.09003 * 109.58898 * 244.26038 * 26 9 7 45 45 H 1.08998 * 109.59069 * 4.68932 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0528 -1.2236 -0.2818 9 7 1.3747 -2.3598 0.3611 10 6 0.2473 -2.3277 1.3021 11 6 0.5499 -3.2613 2.4741 12 6 0.9358 -4.6359 1.9335 13 6 1.0494 -5.7143 3.0198 14 7 0.3485 -6.5996 2.0681 15 6 0.2842 -7.9343 1.8925 16 8 -0.3943 -8.3964 0.9997 17 6 1.0557 -8.8525 2.8051 18 6 0.8151 -10.2834 2.3983 19 6 1.6409 -10.8975 1.4687 20 6 1.3821 -12.2153 1.1251 21 6 0.3168 -12.8687 1.7158 22 7 -0.4477 -12.2530 2.5962 23 6 -0.2274 -11.0022 2.9515 24 6 -0.2543 -5.4365 1.3866 25 6 2.1316 -4.5948 0.9852 26 6 1.8147 -3.6517 -0.1817 27 1 -0.4850 0.8400 -0.0004 28 1 0.1091 -1.3119 1.6724 29 1 -0.6594 -2.6616 0.7975 30 1 -0.3334 -3.3531 3.1062 31 1 1.3759 -2.8539 3.0572 32 1 2.0742 -6.0193 3.2311 33 1 0.4753 -5.4939 3.9198 34 1 2.1198 -8.6282 2.7311 35 1 0.7240 -8.7058 3.8329 36 1 2.4660 -10.3618 1.0231 37 1 2.0048 -12.7250 0.4049 38 1 0.1082 -13.8952 1.4532 39 1 -0.8721 -10.5327 3.6797 40 1 -1.2158 -5.1336 1.8012 41 1 -0.2654 -5.5207 0.2999 42 1 2.3271 -5.5962 0.6015 43 1 3.0087 -4.2307 1.5201 44 1 1.0207 -4.0807 -0.7931 45 1 2.7087 -3.5079 -0.7884 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050488755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:57 Heat of formation + Delta-G solvation = 56.083766 kcal Electronic energy + Delta-G solvation = -25994.680035 eV Core-core repulsion = 22399.796519 eV Total energy + Delta-G solvation = -3594.883516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.83747 -40.24031 -38.29216 -35.88676 -33.74624 -32.52050 -32.10826 -30.72974 -29.88965 -28.56593 -26.75796 -25.99095 -24.15856 -23.77906 -22.56692 -22.34096 -20.89990 -19.14128 -18.07650 -17.31631 -17.09603 -16.71318 -16.39125 -15.95284 -15.56082 -15.10095 -14.84498 -14.24117 -13.98980 -13.90658 -13.62645 -13.56631 -13.41921 -13.25884 -13.02501 -12.70468 -12.44444 -12.25024 -11.90926 -11.79307 -11.66222 -11.46367 -11.09680 -10.77275 -10.52711 -10.34461 -10.18950 -10.08516 -9.92219 -9.84611 -9.67005 -9.66878 -9.41316 -9.12568 -8.59444 -8.49201 -6.70028 -5.82759 -3.25401 0.87812 1.09032 2.62550 2.86320 3.34172 3.42729 3.44463 3.62374 4.18938 4.42656 4.45833 4.47721 4.55312 4.58492 4.75445 4.77995 5.03131 5.10327 5.15466 5.18990 5.34502 5.39647 5.43348 5.48834 5.53049 5.55507 5.60719 5.81563 5.88174 5.90690 6.01475 6.02911 6.05717 6.22428 6.40095 6.47831 6.52581 6.56091 6.62468 6.76829 6.91246 7.28941 7.60642 7.76371 7.76736 7.78008 8.16897 8.42075 9.17880 9.81271 10.37361 11.25511 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.039572 B = 0.002469 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.403894 B =11338.544263 C =11532.068203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.170 3.830 11 C -0.127 4.127 12 C -0.074 4.074 13 C 0.101 3.899 14 N -0.640 5.640 15 C 0.533 3.467 16 O -0.540 6.540 17 C -0.093 4.093 18 C -0.114 4.114 19 C -0.062 4.062 20 C -0.171 4.171 21 C 0.093 3.907 22 N -0.485 5.485 23 C 0.112 3.888 24 C 0.118 3.882 25 C -0.107 4.107 26 C 0.146 3.854 27 H 0.253 0.747 28 H 0.090 0.910 29 H 0.018 0.982 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.018 0.982 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.876 -18.852 8.501 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.730 3.270 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.044 3.956 11 C -0.167 4.167 12 C -0.075 4.075 13 C -0.022 4.022 14 N -0.375 5.375 15 C 0.322 3.678 16 O -0.418 6.418 17 C -0.134 4.134 18 C -0.116 4.116 19 C -0.088 4.088 20 C -0.191 4.191 21 C -0.063 4.063 22 N -0.193 5.193 23 C -0.045 4.045 24 C -0.003 4.003 25 C -0.147 4.147 26 C 0.020 3.980 27 H 0.063 0.937 28 H 0.108 0.892 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.172 0.828 39 H 0.169 0.831 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.036 0.964 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.691 -19.635 8.338 21.501 hybrid contribution 1.072 1.354 -0.354 1.764 sum 3.764 -18.280 7.984 20.299 Atomic orbital electron populations 1.70043 1.05260 1.25433 1.53804 1.25039 0.95256 0.98430 1.00890 0.86258 0.79400 0.84031 0.77290 1.20274 1.21754 1.21550 1.19209 0.92788 0.84923 1.41277 0.91720 1.44010 1.37174 1.01380 1.48727 1.20683 0.88824 0.98709 0.87364 1.22062 1.00212 0.94158 1.00253 1.21982 0.96014 0.94513 0.95000 1.23497 0.97179 0.87492 0.94016 1.50132 1.49224 1.03561 1.34616 1.20078 0.81775 0.80880 0.85092 1.90734 1.42171 1.74889 1.33987 1.20534 1.02246 0.90299 1.00289 1.20323 0.97312 0.95476 0.98491 1.21459 0.98343 0.94576 0.94381 1.22111 0.99763 0.95600 1.01620 1.22752 0.91149 0.99995 0.92446 1.67678 1.27846 1.10322 1.13489 1.22583 0.94282 0.90008 0.97622 1.23279 0.97087 0.80675 0.99280 1.21762 0.95802 0.99284 0.97822 1.20882 0.97608 0.86917 0.92609 0.93658 0.89221 0.96400 0.92791 0.91931 0.90320 0.89684 0.87854 0.87792 0.84943 0.84743 0.82849 0.83089 0.89878 0.90028 0.93049 0.91710 0.96401 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.39 11.22 55.49 0.62 -24.77 16 2 C 0.00 0.07 4.89 -17.43 -0.09 -0.02 16 3 Si 0.90 21.07 29.59 -169.99 -5.03 16.04 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.65 9.56 -15.06 -0.14 -6.80 16 8 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 9 N -0.59 -13.95 2.97 -172.50 -0.51 -14.46 16 10 C 0.17 3.74 5.21 -3.90 -0.02 3.72 16 11 C -0.13 -2.09 5.24 -26.97 -0.14 -2.23 16 12 C -0.07 -1.07 0.77 -154.42 -0.12 -1.19 16 13 C 0.10 1.11 7.75 -3.16 -0.02 1.08 16 14 N -0.64 -8.49 3.44 -180.22 -0.62 -9.11 16 15 C 0.53 7.37 8.05 -10.99 -0.09 7.28 16 16 O -0.54 -9.85 16.76 5.55 0.09 -9.75 16 17 C -0.09 -0.89 5.61 -29.03 -0.16 -1.05 16 18 C -0.11 -1.23 4.39 -104.48 -0.46 -1.69 16 19 C -0.06 -0.62 9.86 -39.28 -0.39 -1.01 16 20 C -0.17 -1.55 10.11 -39.44 -0.40 -1.95 16 21 C 0.09 0.93 11.18 -17.54 -0.20 0.73 16 22 N -0.49 -5.91 10.36 -13.25 -0.14 -6.05 16 23 C 0.11 1.28 10.86 -17.55 -0.19 1.09 16 24 C 0.12 1.78 7.62 -3.15 -0.02 1.75 16 25 C -0.11 -1.69 5.21 -26.73 -0.14 -1.83 16 26 C 0.15 2.91 6.38 -3.66 -0.02 2.89 16 27 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.09 2.25 5.98 -51.93 -0.31 1.94 16 29 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 30 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.10 0.75 8.09 -51.93 -0.42 0.33 16 36 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 40 H 0.08 1.20 8.07 -51.93 -0.42 0.78 16 41 H 0.08 1.38 7.41 -51.93 -0.38 0.99 16 42 H 0.05 0.76 8.01 -51.93 -0.42 0.34 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.02 0.37 7.49 -51.93 -0.39 -0.02 16 45 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -32.73 366.52 -9.60 -42.34 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -6.94 Total: -0.54 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -2.60 Total: 0.78 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.65 Total: -54.39 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.73 -9.60 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050488755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.421 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds